Array 1 1622715-1622087 **** Predicted by CRISPRDetect 2.4 *** >NC_008639.1 Chlorobium phaeobacteroides DSM 266, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1622714 32 100.0 32 ................................ AGACTAAACAGGTCGAGATCCATATCATTTAC 1622650 32 100.0 35 ................................ AGTATACCGGCGGACTGACGCTTAAAGATTTGCAA 1622583 32 100.0 34 ................................ TCTGTCTGGCAATCAACAAACACAACACATCTAG 1622517 32 100.0 34 ................................ TTAACTCCTACGTTTTCAGCAAGGCTCCACGGCC 1622451 32 100.0 35 ................................ GTGAAACTGACGGGGAGCCGTATTATAAGTGGGGA 1622384 32 100.0 34 ................................ CCGATATCAGGAATATGGTCATCGTGTTCCCGCC 1622318 32 100.0 35 ................................ GACACAATCGAAATCACAGCGGCGACACAATCGAA 1622251 32 100.0 34 ................................ TTTTAAGATAATTTGCTGAGCTTTCGCCGCATCG 1622185 32 100.0 35 ................................ TGACGTCTCATCATCGGCATCCGCATCGAGTCGAA 1622118 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 100.0 34 GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Left flank : GCACCCTGTATTTCGGCATGAACCGATTTCTTGAACGCATTGCCCAGACAAAACTCGACGGAACCTTTGTACGGGTGCTTAACCAGATTGAACGAACACATCTGATTATTCTTGATGATTTCGGCCTCCAACCTCTCGACGCAACGACACGTATTGCTCTGCTGCAAATCCTTGAAGATCGGTATGGAAAACAAGCGATTATGATCACTTCTCAGCTTCCGGTTGCCCAGTGGCATGACGTAATTGGGGAGCCGACAATTGCCGACGGAATCATGGATCGGCTGGTCGGAAATGCTCACCGGCTTGAGCTGAAAGGTGAATCATTAAGAAGGAAGAAACTGGATAAAAATGTGTAAGTTCTAACAGCAGATCTGGCCTGTATAAGGTGGTACAGTTTGCTCCGGAATAGGTGGCACACTTTCGCCCGGAATTAGTGGTACACTTTCACCGGTATACTCAGAAACTCGTTCACCTGTTTTATTGCACCTCCGGAGAGGGGC # Right flank : AAAAACAATCCAAGCGATGGGGCGTTGGCCCGTATGGTCGGGAGCGCTTGGGGACGTTGATCAGTAAACTAAAAGAGATGAATTTTATATATATTGGAAAAAGAAAATATCGATACTGAACTGCCAATACCCAACGCTTATGCCACGAGGAGCGAGACTTGATGTAGCGGGAACTCTGCATCACGTGATTATCAGGGGAATCGAACAAGGGAGTATCGTACGAGACGATACAGACAGGAAAATGTTTCTCGATCGGATGGGGTTGCTTGCCGCAAGCTCCGGCACGAGCATCTATGCCTTTGCCCTGATGACGAACCATGCGCATATCCTGCTGAAAAGCGGCCCGAATGGGTTGTCCGGTTACATGCGTCGTCTGCTTTCATGGTATGCGCAGTATTTTAATCGCCGTCACCAGCGAGTCGGACATCTTTTTCAGAACAGGTACAAATCGATCATCTGCGAAGAGGAGGCATATTTCGATAAACTGGTGGCATACATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1633050-1625359 **** Predicted by CRISPRDetect 2.4 *** >NC_008639.1 Chlorobium phaeobacteroides DSM 266, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1633049 32 100.0 36 ................................ GCCTCGAACAACGCCTGCTGATAAGGGCGGGCTGTG 1632981 32 100.0 36 ................................ CAGTGATTGCGCTTGCTCAACTTAACAGAAGCATTG 1632913 32 100.0 37 ................................ ACAGGTGCCGATTCAGGCAACTCTTTCTCGACCATGC 1632844 32 100.0 34 ................................ GCTTGAGCCTCAACGGTTTTGGCCTGCGCCATCG 1632778 32 100.0 34 ................................ TGCCGTATATCGCCGATCACTTGATCGAGAAACG 1632712 32 100.0 33 ................................ AACGGAATGTTGCGCGGCTGTGTCCGTATGGCT 1632647 32 100.0 34 ................................ CCGCTCATCAGTTCCCGCACCCCGATGTCGTGAG 1632581 32 100.0 34 ................................ CGTCTCTTGAGCAAAACCGATCAAAGATAGAGGG 1632515 32 100.0 34 ................................ ATCCTGTGCAGCTTGCTGATGTAAAAGCGCAGAT 1632449 32 100.0 34 ................................ TGTTGAGGATTGCGAATTTGTTTTTGCGGATAAC 1632383 32 100.0 35 ................................ ACCGTTACTGATTCAGCAACGGGAACAATTGTTGG 1632316 32 100.0 35 ................................ CGACTCCAGGGTTTCGCGACATTGTCGCAAATTCG 1632249 32 100.0 35 ................................ TCGGTACACTTACAGATGGTACCATGCTAAAGTTA 1632182 32 100.0 35 ................................ GCATGAGGCGCAAAAGGCTTATAATAAACCTTCTT 1632115 32 100.0 34 ................................ CCTCTGCGCATCATATCAACACACAATGGTATGA 1632049 32 100.0 33 ................................ ACCTTGTTGGTCGAGATGTACAACTCCGCGAGA 1631984 32 100.0 35 ................................ CCGCCGGAAGCTACCCGACAAACGTCGAATCCGGA 1631917 32 100.0 34 ................................ GCTCCGAACAACCTCCGCCCCAAGATCGTAGTTT 1631851 32 100.0 35 ................................ AATGGCTGAGATTGTCATATCCTCGACTCCGCTTT 1631784 32 100.0 36 ................................ AACGCCATCGATCACATTAACGTCAGTCAAATATCC 1631716 32 100.0 33 ................................ ATCTGCAGCACCTGAGCGCCGCCGGCGACAGAA 1631651 32 100.0 35 ................................ GTCGAAAACGTCACCGCCATCAAGCTGCTCCCGCA 1631584 32 100.0 33 ................................ CGATCCTACGCCCATAAAAGGAGTAAGTACCAC 1631519 32 100.0 34 ................................ ATCTCCTATATGTGATTTTCACAAAATTCACTAT 1631453 32 100.0 36 ................................ ATTCCGCAATCCTGGAATCTGACCATATTGATCCAC 1631385 32 100.0 35 ................................ TTCGCGATACTCGGATGGTTGGCCATTCGGGTAAT 1631318 32 100.0 33 ................................ GCACAATGGATTAACGGCAAGCTTTGCTCTTCT 1631253 32 100.0 35 ................................ TGTTTTTTAATTGATAGCTCGTCGTTCATCAGCTT 1631186 32 100.0 35 ................................ TCGACACAAAGGGAATTTGGAAGACTTCCTTGCAC 1631119 32 100.0 36 ................................ CCCGCGATGCTTGATTTTGTGGCACCTTCGGCAAAG 1631051 32 100.0 35 ................................ TCAAAGCGCATGAATATTTTTTCAGGCTTTGCCAT 1630984 32 100.0 33 ................................ GATCCGGGGTTACGGTTCCCGGCTGCATTGGCC 1630919 32 100.0 37 ................................ CCTGCAATCACAATACTTTTTAATGAATTTTTTTGAG 1630850 32 100.0 34 ................................ AATCACAGATGAAGAATTGATGAAGATGTCCTCC 1630784 32 100.0 35 ................................ TGGTAAAACTCAGCACGTTCCGCCGGGGCGCCTCT 1630717 32 100.0 35 ................................ TGCTTTTTTTTGTGCTTGCAGGTAATTTTGTTATC 1630650 32 100.0 35 ................................ GCATCAAGGCGCTCTTGCAACTCAGCCCTCTGCCG 1630583 32 100.0 36 ................................ ACGGTTCTCTTCGATGGTGATCTGTTCGACACATGC 1630515 32 100.0 35 ................................ ACCGCATCATTTGCCCGATCTACCGTAAAGCCGTC 1630448 32 100.0 34 ................................ TGCTTCCTGCTCGTCAGCGCAGGTGGTCTGCATG 1630382 32 100.0 34 ................................ TTATCGTCGGGCTATACACGATCAACGACATAAA 1630316 32 100.0 33 ................................ CATTACGACAGACGGAGTATCGGCATCGATCCC 1630251 32 100.0 35 ................................ GTATCATAGCTTTCCTCCGTCTTGCACCAGCCAAC 1630184 32 100.0 35 ................................ GAGACAAAAGGCGTCCCGGCATCTTCTTATGAGGG 1630117 32 100.0 35 ................................ CAGTCGAACTTGAAGGGGAACCGGTGCGGCATCAG 1630050 32 100.0 35 ................................ TAAGCTGATCTCGCACGGACTGCACATCCCGGTTG 1629983 32 100.0 37 ................................ TCAAGGCAAGCTGCTTGAAAGCTCTATACCCCGGCTG 1629914 32 100.0 37 ................................ ATATTGTCGCCCATCGTGAACCCATATCCCAAAGGTC 1629845 32 100.0 34 ................................ TTACCATCTGGACGTCTGCCCAGTCTGGTTGGTT 1629779 32 100.0 35 ................................ GAGTTGTGGAGGTTCCATCTTTGTAATGTTCGGTG 1629712 32 100.0 33 ................................ CGCTCTCGAAGCTGGTGGATAGCGTAATCGTCA 1629647 32 100.0 35 ................................ GTCCAGTCCTGCCAATCCTCGAGGATGTGAACGAC 1629580 32 100.0 34 ................................ GAGGCAATGGTGTACTCGACAGAGCTGATGCCGA 1629514 32 100.0 33 ................................ AGGCCGACAAGGCCGGGACAGTTGCGCGGAGTG 1629449 32 100.0 36 ................................ GGCTACACGGCCAAGATTATCATCGCTCCCGGCTAC 1629381 32 100.0 33 ................................ GCTCAACAAACCCGCAGCCTTTGGATATATGGC 1629316 32 100.0 35 ................................ TCTGTTTGCTTGAGCTTCTTTTGCTGCAGAATTGT 1629249 32 100.0 35 ................................ GAGATGTAGACTTTGATCAGATGGTAGATTCTCAT 1629182 32 100.0 36 ................................ AGGTATTCACCAGCCTCATCGAATATACCAGTATTA 1629114 32 100.0 36 ................................ ACGTCTATCTTTTTGCGCTTCACTTCTTGATCAATG 1629046 32 100.0 36 ................................ TACTCTTACATCTTATCCAGGAGCATTGAAATTCAC 1628978 32 100.0 36 ................................ TTCCATACCCTCAAGAGCGTCGTCCTCATGGTTAAG 1628910 32 96.9 33 ..............A................. AGGGTGAGGTACGTCAGCGACATGGCGGTAATC 1628845 32 100.0 35 ................................ TCCATCCTCCGGCTTTAATGTCGTAAACGCTCATA 1628778 32 100.0 34 ................................ TCGGGCAGATGAGCGAGATTATCAAGGGGGAAAT 1628712 32 100.0 34 ................................ GCGATACAGGGCGTGAACCCTGATATTGAAGGCA 1628646 32 100.0 33 ................................ TGTTTTGTTGTCATTGTCTCATCCACTAATTAA 1628581 32 100.0 36 ................................ ACTGCAAGGCCAATCGTGACAGTCTGACCTGCGGTA 1628513 32 100.0 34 ................................ TTGCGTGCGCAACACCAAACCGCAATGACAAAAG 1628447 32 100.0 33 ................................ ACCGTTGGGCGGCAGAAAAATACGCAAAAGCAA 1628382 32 100.0 36 ................................ TTCGAGAAATGCGGTGTCGAAATCCAGGTTAAAATC 1628314 32 100.0 35 ................................ GGCTTTGATGTCAGTTGCCCACTTGATCTGTTTTT 1628247 32 100.0 34 ................................ GCGCATGTCTCCTGCAGGTACTATGTGGTGCCAC 1628181 32 100.0 34 ................................ TTTAGGCTTTCTGACGGCCTTATCTGAGTATACA 1628115 32 100.0 33 ................................ GGCAACTCGCGCTGCATGCTCTGGATCAAGTGC 1628050 32 100.0 34 ................................ GTCTCCATAAATGCGCTCTTCTATGTCGCTTTTT 1627984 32 100.0 33 ................................ CATACCAGTGATTTCACCAGTCGGTATGGAATC 1627919 32 100.0 33 ................................ CGTTAAGCAGCGCGGTTGTCAACCGGAGCCTTT 1627854 32 100.0 34 ................................ TATATCGTTTTTTGGCGGGCGCCCACAATTGTGT 1627788 32 100.0 34 ................................ ATAAAAATTACCACTGCCACTATTACAACAGTAG 1627722 32 100.0 34 ................................ AGTGTACTCGTCGTGCCAAAACCCGACATCAATA 1627656 32 100.0 33 ................................ CTGCAGCATACACCCGAGCAGCGTCTTGTGCTG 1627591 32 100.0 35 ................................ TTGCCCATTTTATGGCGTCGCACATCTCCTTTACA 1627524 32 100.0 36 ................................ CGTTTCCAAGTGTCATTTTGTTTGCACCTATTCCAT 1627456 32 100.0 34 ................................ GCTGTCAAAGTGGCAAACGATCCGATAAGATCGG 1627390 32 100.0 34 ................................ AACACTTTGCTGTCAACAATGGATTACGATAATG 1627324 32 100.0 36 ................................ TTCATACATGCGCTGTACCTGAAATGCTTGCCGAAT 1627256 32 100.0 34 ................................ ACGCAACTACATTAAAAACATTGGTGTTGATAAA 1627190 32 100.0 36 ................................ ACAAACTGGTTGTCCGAAAATTGACATTTATGTTAA 1627122 32 100.0 35 ................................ TACAACTGCGATATTCTCAAGCTTGCGGCCAAGTG 1627055 32 100.0 35 ................................ CGAGTACTGGACACGTCATGCAATATGGAAAGAAC 1626988 32 100.0 34 ................................ GCGTAAAGGTACTCATAATACTCTATCTTGATTT 1626922 32 100.0 33 ................................ TCGGTTCTGATCTGGCTTATCTGGCTTACCTTG 1626857 32 100.0 35 ................................ TCAAACAGGATGATAAAACCCTACAGGCTCAGTAT 1626790 32 100.0 33 ................................ AGGTATGTTAAGACGTGCTTTTTCATCAGTCCG 1626725 32 100.0 33 ................................ CTTTTTGGATCGTACTCCATCGGGAGCATTAAA 1626660 32 100.0 35 ................................ TATATACCCGTCCCATACCGCATAAAACATATCTT 1626593 32 100.0 33 ................................ GCTGAAAAACAGGCCTATAAGCCATCGGGTGTT 1626528 32 100.0 34 ................................ TGAGCAGTTCATCTGCGTCCGCCGCACCAAGGAC 1626462 32 100.0 35 ................................ CGCTCGGTGGTTTCAAGCAGGGCGATGCTGTTGAG 1626395 32 100.0 35 ................................ TGACACCGATGAAGCTCCGGACAAAGGATAAAAAC 1626328 32 100.0 34 ................................ GTTTTGCCCGGCATAAGACCAATGAAAATCAAGT 1626262 32 100.0 34 ................................ CTCGTTGATTACGGTTTCCGCATCGCTGAGCTTC 1626196 32 100.0 36 ................................ GATGTCTACGCTCACCTGCATACCCTTGATCACGAG 1626128 32 100.0 34 ................................ CCGTTGATTGAGGTCGTGCAAGGCCTGGACAACT 1626062 32 100.0 36 ................................ TGCCGATCACCCACTTGGCAAGAGAGTACAATCCGA 1625994 32 100.0 34 ................................ ATGCTTGGCAGGTGTGTGATCACAATCACCTTTT 1625928 32 100.0 35 ................................ TTGGGTGGCTTGCGATCAGGGTAATGGCAAGCATG 1625861 32 100.0 35 ................................ GAGTAGTTGAGGTTCCATCTTTGTAGTATTCAATG 1625794 32 93.8 35 ..A...........................T. GATTCCGATCAAAAAACACAACCGTAAGTGACACC G,G [1625775,1625782] 1625725 32 96.9 37 .................A.............. ATAACCGAATCCCTCCCCTGAACTGCCGTGGATGCAG 1625656 32 100.0 34 ................................ TTTTTGAGCGCGTCGTGCCGGAACGCGACATCAC 1625590 32 100.0 34 ................................ AGACCGTCGCCGTCGATGTGGTCGATTTGGCCTT 1625524 32 100.0 34 ................................ CTATTTCACGGAAATCATCGGCCATCAATGACAG 1625458 32 100.0 36 ................................ AGCTTACAGACGTGAAAGCGCAGATACGGATAGCCT 1625390 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 116 32 99.9 35 GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Left flank : ATATGTACCCTCCTTTTGTCTGGAGGTAACCGATGTTAGTATTGGTAACCTACGACGTCAATACCGAAACGCCTGCCGGAAGGCGCAGGCTTCGCAGGATTGCGAAAACCTGCCAGAACTATGGCCAACGGGTTCAGTTTTCGGTATTCGAATGTAATGTCGATCCGTCACAATGGGTAAAATTACGGGCAAAACTGATGCATGAAATGGATCATGCGCATGACAGCCTGAGGTTTTATTTTCTCGGCTCCAACTGGCAGAATCGCATTGAACACGAAGGAGCGAAAGAACCCCGCGATCTCGAAGGACCGTTGATTTTATGACGCGCGAACATCAAGCTGCACCTGAAATTCAGGGATGTTCGCGATAGATCTAACAGCTTTATTTATATGAACTTATTTTTTTCATTGTCAGGTTTGCGTAAATTGTTATTTGGCATACGAAATGGTTCGCGGATAATGCTCCGCAGGCCATGGAATACCTGACACGATAGATTGACA # Right flank : TTGAGCACACCGGAGAATAGTGTGCCACCTCTACCGGAGAATAGTGTACCAGTCATACCGGAACAATATGTGCCACCCGTACCGGAGTAAAGTGCGCCACCCCAGCAGGCCGGATTTGTAACATCATAAACCGTACCTTCGATCTAACAAACCGGAGGTACACCATGGCAAACAAGGCCTTGACTATGTTACAAGTTCGACGTATTCTCAAACTCTTGATGGAGGAGTGTTCCCAACGGGAAATCCATCGCAGTACAGGTATTCACCGCGTCACCATCAAAAGCTATCTGCACCGGTTTACGAGCAGCGGAAAACCGTTTTCAGAGCTGTATGCGCTCTCTGATTACGATCTTTCTGTTCTGGTTCACCCACCCCGTTCCACCAAAACCTCTGATGAACGGTATGCAGATCTCCAGCCCCAACTGCAACGTTTTTCTGATGAGCTGAACAAGACGAACTCTCATGTTACCAAGCAGGTGTTATGGGAAGAGTATCTTCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.90,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2379139-2377890 **** Predicted by CRISPRDetect 2.4 *** >NC_008639.1 Chlorobium phaeobacteroides DSM 266, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================= ================== 2379138 35 100.0 41 ................................... CATACTTTAATCGCTTTCTGCGCAACGACCATATTGCGCGT 2379062 35 100.0 41 ................................... TTCCGTTCGTGATTGTTCTTGCATCTTTCAGATATTCTGCA 2378986 35 100.0 41 ................................... TTGCGACTGTGTCGGTTGCCAGAACGACCCCCACCGGATTG 2378910 35 100.0 41 ................................... TCATGCAGAGAATACTTCGGCGACGCCGTGATCAACAATCA 2378834 35 100.0 46 ................................... CTTTAAAAAACCAATTCTGATAATTGCAATTTCGTTCCTGCTTAAA 2378753 35 100.0 39 ................................... GAACATAGAGAATGCCCCCAACAATCGCCTGCACGGCGA 2378679 35 100.0 37 ................................... AGCATCTGCGGGACGTCAAGCTTACCCGTTGCGACAA 2378607 35 100.0 49 ................................... TGTTCTCAAGAGCATCGGACAATAAGTGAATCTGACCTTCTTTGTAGTT 2378523 35 100.0 40 ................................... TTAACGCCAAGGAGACCTTGACCGATTTAAGCGAGGCGGG 2378448 35 100.0 38 ................................... TGTTATCATCACAACACCAACAACCTCCCCCGGCTCGC 2378375 35 100.0 41 ................................... AGCCGCAACGGAACAAGTACTCACGAAGAATGCCGTACATC 2378299 35 100.0 38 ................................... AAAATCTTTTAAATGATCGAGGACCTTCCTACTAAAAA 2378226 35 100.0 43 ................................... CATCTCATCGTATTCTTTAGCAAGTGGTTCCCACTTTCCAAGA 2378148 35 100.0 39 ................................... TAAAATTCTGTATTCCGAAACAATTCCGGTGGAGTTTTT 2378074 35 100.0 39 ................................... GTTTCAAGCTCCATCATACCGTTTACGAAAACTTGATAG 2378000 35 100.0 42 ................................... GTATCATTAGCACTCCCTCTCCATACGGTCGGGCTTGGTATG 2377923 34 88.6 0 ...........................G.-..T.T | ========== ====== ====== ====== =================================== ================================================= ================== 17 35 99.3 41 CTTTATATCTTATTGCACTCATAGAGGATTGAAAC # Left flank : TTTTGCAGGAAAAAGACTTCTACTACCGCAAAGATGAGCCCGGTTGCTTTCTGTCGAACGACGCCCGCAAACGGTTTTTAAACATATTCGAAACAAGGATGTGGCAGGAATCCCGTGACGGCTGCACCGGCAAAACGCTCAATTTCAGGCGGCATATCGAAAAACAGGTGAGGATCATGAGAGAGGTTATAGCCGGAACCCGAACGCAGTACGACCCGTACAAGCTACCGGTATAAAAGGTAATTGATCAATCGAGACCTCACAAACAGTGAAACGCAAAACCCGGTTTTTTCGACAATAACGTCAAGCAGAATAAAAGGTTACAGGGAAATTTAAGCCCTGATGAGCCTTCGACGTTGTTTATCTCATTTATTTTGCTTAAGATAGAGATACTGAACAGGAGTAAAATCAGGTCATTGTCCCTTGACATCGCCGATTTTTCAACGAGCCTTCGATTTCCCTCCCGGAGCCCTTGCCAGACAAGCGTTTCCAGAGGTACT # Right flank : AAGTTCTGAGTACTGAGTTCCAAGTGCTGAGTTGGGGGAAAGGACAGAAGAGAAGAGAGATCTCTCCCTAACGTCGAGATGACGAAGAGCGTGTTACGTGCTACGTGTTACGTTGCAAATTTGTTCCAAAATTCGTTCCCAATGCAAAACAAGGCTGGATGGCTGGATAGCGAGATGGCGAAATAGCAATACAGCCTTAATTCCCTTTCGTGCAAATTCGTGTAATTCGTGGGCAACTCTTCCTCTTCAATTAGGGCTTCAGATCTCTCCCTAACGTCGAGATGACAAAAGGGGGACGCGCGGGATGAAAAAGGGGGAGTAAGGGATAACAGGCAAAACAATTCGTCTCTTAATCGAAAAACCGGCAGTTGTTTTTATCGGCGAAGCCTGAGAAAACCAACTGCCAATTCTCTTTTCGTGTAATTCGTGTAATTCGTGGGCAAACTCTTCCTCTTTATCTTCTTCATAATTTCAGATCCCTCCCTAACGTCGGGATGACA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATATCTTATTGCACTCATAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 4 2384198-2383058 **** Predicted by CRISPRDetect 2.4 *** >NC_008639.1 Chlorobium phaeobacteroides DSM 266, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 2384197 35 100.0 36 ................................... ATAATACTTACCCATAATCACCTCCATTGTTGCCGA 2384126 35 100.0 37 ................................... TTTTCTTGTTGGGATGGTGGATTTCGAGCTTCATCTG 2384054 35 100.0 45 ................................... AGAATATTGAGGAATGCTCCCCAAAAACTGAAAACTTTTTTCCAA 2383974 35 100.0 38 ................................... TGTCTCGTATTCTCTACTGCAAGCTAACAAGGTTGACA 2383901 35 100.0 36 ................................... TTAACGTTTATCATCTTTACCGTCAATGTACATTTT 2383830 35 100.0 33 ................................... TTGCACTGGCGTTGCCACCAGTTGCTGTCGCCT 2383762 35 100.0 38 ................................... ATAAATGATCAATTCCTTCTGCAATTTGTGTTCGGGGA 2383689 35 100.0 38 ................................... TTACGCATTCGACTACTCCTTTTTTATTGTTGTTATTA 2383616 35 100.0 38 ................................... ACCATCCGGTACTCCGGACTCCTTTGGGGATAGTGTCG 2383543 35 100.0 43 ................................... ATTGTCAGTTTCCGCCGTCGTACATGGTTTTCCGGATTCCGTT 2383465 35 100.0 40 ................................... AAACGTATTTTTTCTTTTTCTCTGTCCTCCATGAGGTTTC 2383390 35 100.0 36 ................................... TTGGTGGGCGATATTCATCGCCCTCACGTATCCAAA 2383319 35 100.0 40 ................................... CTTCTTTCCGTTCTTTGCAATGTGAGCGTCGTAGTCAACG 2383244 35 100.0 45 ................................... TTTCAGGAATGATGGCATGACAAATACCATTACGCCCAACGTCAA 2383164 35 100.0 38 ................................... AGATAATCCAGCACGTTGGCGTTAAGCCTCTGTTTTTT 2383091 34 88.6 0 ...........................G.-..T.T | ========== ====== ====== ====== =================================== ============================================= ================== 16 35 99.3 39 CTTTATATCTTATTGCACTCATAGAGGATTGAAAC # Left flank : GATGCCCGTTCATGGGCATACTGGAATCTGAAATGCGGTCGTCAACCAGCCCCGCCACTACCAATCCGCATTCTTTAAATGGTATTGCTCCTTTATTGTCACTCACTTGATTCCGTGACGGCTGCACCGGCAAAACGCTCAATTTCAGGCGGCATATCGAAAAACAGGTGAGGATCATGAGCGAGGTTATAGCCGGAACCCGAACGCAGTACGACCCGTACAAGCTACCGGTATAAAAGGCAATTGATCAATCGAGACCTCACAAACAGTGAAACGCAAAACCCGGTTTTTTCGACAATAACGTCAAGCAGAATAAAAGGTTACAGGGAAATTTAAGCCAAGATGAGCCTTCGACGTTGTTTATCTCATTCATTTTGCTTAAGATACAGATGTTGTACAGGAGTAAAATCAGGTCATTGTCCCTTGACATCGCCGATTTTTCAACGAGCCTTCGATTTCCCTCCTGGAGCCCTTGCCAGACAAGCGTTTCCAGAGGTACT # Right flank : AAGTTCTGAGTACTGAGTTCCAAGTGCTGAGTTGGGGGAAAGGACAGAAGAGAAGAGAGATCTCTCCCTAACGTCGAGATGACGAAGAGCGTGTTACGTGCTACATGTTACGTTGCAAATTTGTTCCAAAATTCGTTCCCAATGCAAAACAAGGCTGGATGGCTGGATGGCTGGATAGCGAGATGGCGAAATAGCAATACAGCCTTAATTCCCTTTCGCGCAAATTCGCGTAATTCGCGGGCAAACTCTTCCTCTTCATCCCATTCCCCGGCATTCCAATGAGATCTCTCCCGATGGTCGAGATGACGAAGAGCGTGTTACGTTGCAAATTTGTTCCAAAATTCGTTCCCAATGCAAAACAAGGCTGGATGGCTGGATAGCGAGATGGCGAAATAGCAATACAGCCTTAATTCCCTTTCGTGAAAATTCGTGTAATTCGTGGGAAAACTCTTCCTCTTCATCCCAATCCCCGGTATTCCAATGAGATCTCTCCCGATGGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATATCTTATTGCACTCATAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 5 2392258-2390660 **** Predicted by CRISPRDetect 2.4 *** >NC_008639.1 Chlorobium phaeobacteroides DSM 266, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 2392257 37 100.0 40 ..................................... GGGCATCTGCCGCGGCTCTCTTCGGTGCGAAGAACTGTGA 2392180 37 100.0 44 ..................................... AAAACGAAATCGTCTTCTCTTCAGCGTTCGCCGCATTCTGAAAC 2392099 37 100.0 37 ..................................... TTAGGCGCTGTGAGACGATGCGACTGTATTGTGTGTT 2392025 37 100.0 40 ..................................... GAAAGTACCGCCTGAGATGTTGAGACCCGAGCCCATAACA 2391948 37 100.0 40 ..................................... ACAGGAATTTCCATAACTCTTTTCACAAAGTTATTCATTT 2391871 37 100.0 46 ..................................... AATGAGGTACTTTTGTCTGCCTTCTTCTTCGGGTAGAATTTCAAAA 2391788 37 100.0 44 ..................................... TCTTTAACCTATCGTTCCGGCAGCCTTGCCATAGCACATAACGG 2391707 37 100.0 40 ..................................... TTCAGCAGTAACGTTTCTTGTTGTGTCAATTCCTTGCTTC 2391630 37 100.0 40 ..................................... TTGTAGGCCGCTACAATCTGATCGAAGTGCTGATGGCCTT 2391553 37 100.0 41 ..................................... GTTGACCTCGTCGCATATCGCCAAGGCGTCCTGCCAGCTTG 2391475 37 100.0 42 ..................................... AATATCATACCAGAAAGTATGAATTGTCAAAAAATTCATGTT 2391396 37 100.0 43 ..................................... TTCAAGTAATCCGCCCATATCGTCCGGTGGGCATTTTCGTCCG 2391316 37 100.0 43 ..................................... AAATTATCGCCAAATCCGCCATCTGTTCGTTATGCAATCGAGC 2391236 37 100.0 41 ..................................... TGGGGGGATGAACCGGATGTTATTTTCATGCACCCGATCAA 2391158 37 100.0 34 ..................................... CCGAGACCTGATTGAAGTGTTGAGGGCCTTTTAC 2391087 37 100.0 45 ..................................... TTAATAAACTGGCTCACTTTCCATCAGGGCCTGTCTTGGGTTTGT 2391005 37 100.0 43 ..................................... CTTGCCTTTGGCATCTGACAAAGTGCATTGAGTAAATTTCATT 2390925 37 100.0 39 ..................................... TATTTTAAATCGCGACCCCATGCCGCTCCGTGAACCCGT 2390849 37 100.0 41 ..................................... ACCATACAATCTGCGCCAGCTGTTGGCCCTGCTCCCTTCAA 2390771 37 100.0 38 ..................................... ATGTACCTTTCAACAATAAGCATCGCGTAACGGTCCAC 2390696 37 86.5 0 .............................T.A.G.GA | ========== ====== ====== ====== ===================================== ============================================== ================== 21 37 99.4 41 GTTGATTAAGACCTGACGTATTAAGAGGGATTGAAAC # Left flank : TTCCGCGGGTAGCCAAACTGATGGAGGGCTATGGCGTTCGGGTGCAGTACAGCGTGTTCGAATGCAGCCTGACCCAGCGGCAGCTCATGGAGCTGCAGCGGCGGTTGAAGCGGTTGATCAAGCCGGAAGTTGACAGCGTACGGTTTTATCCGTTGTGTGAATCGTGCAGGGATGAGATTGTCATACTCGGGCAGGGTACCGTGAGCCGGGACGAGCCCTATTATATTGCGTGAATGAACGATAAGGGCTTTTTTACACGGAGCTTTTTGTTTGGAGTAACATAACGGGCTTAATTTTGGTAACTGTATGATTCGTATGGAGTTGTGGCGATAACGGCCTTAAAAGCTCCGTGTAAAAGCTGAAAGTTATTATGTTTTATGTGGTTACGGATAATGGAAAGGGTGTTTTTTTTGCCGAATATGCATTATTATAACAAAAGGAGTGACCTCCGTGTAAATCGGCCCGCCGAGCCCCGCCAGTCAAGGGTTTCACAGGGTACA # Right flank : TTTTGAATTGTGAATTCTGGATTTTGGATTGAAGAGAAGATTTTTTTGTCCACGAATTACACGGATTTTCACGAAGTGGATTTAAGGCGGTTTTGCTATTTCGCCATCTCGCTATCCAGCCATCCAGCCTTGCTTTTGGATGAAGAGGGGTGAAGAGATTTTGAATTTTGGATTCTGGATTTTGGATTGAAGATTGAAGATTGAAGAGGAAGAGTTTTGTCCACGAATTGACACGGATTTTCACGAAGTGGATTTAAGGCGGTTTTGCTATTTCGCCATCTCGCTATCCAGCCTTGCTTTTGGATGAAGAGGGGTGAAGAGATTTTGAGTTTTGGATTTTGGATTGAAGATTGAAGAGGAAGAGTTTTGTCCACGAATTGACACGAATTTTCACGAAAAGAAATTAAGGCTGTTTGTTGTTTCCGCTTCGCTGATCCAACATCCAGCCTTGCTTTTGGATGAAGAGGGGTGAAGAGATTTTGAATTTTGGATTCTGGATT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATTAAGACCTGACGTATTAAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //