Array 1 50546-47671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAADJO010000012.1 Lactobacillus paragasseri strain Indica NODE_12_length_62419_cov_15.113431, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50545 36 100.0 30 .................................... AACGCTTTACGCAAAACAAGCCATGAAGTT 50479 36 100.0 30 .................................... CATTGCGATAAAGATAGTTGTACTCCTTTA 50413 36 100.0 30 .................................... AAAAGCCACTGCCATTCTGGCGGCCAATAA 50347 36 100.0 30 .................................... CACTGGTTTAAACTTGAATGGATTGACCAG 50281 36 100.0 30 .................................... TGATTATTCCGAAAAATAACCTATTTTTAT 50215 36 100.0 30 .................................... ACTTCAAAATCAATCTTTGGTTCTTGGTTT 50149 36 100.0 30 .................................... ACAAAATTTTGAATAAAACTGTCCCTTTTT 50083 36 100.0 30 .................................... GGATAGATAAACAAGGACTTACCTGGCATA 50017 36 100.0 30 .................................... GCTTCAATCGCCTGATGCGTGTACCGTTTA 49951 36 100.0 30 .................................... TTTCTTTTTCGGGTCAAATCCTTGCTTAAT 49885 36 100.0 30 .................................... TAGGTTTGTTAGGCACAAACGTAGGACTAA 49819 36 100.0 30 .................................... TTACTACTCCACTCATTGCACTAGTGATTG 49753 36 100.0 30 .................................... GTTCAAACTTTAGGCTCTCACTGGAAGAGA 49687 36 100.0 30 .................................... AATAAGGCATTCATGTATTCTTGAATTGAG 49621 36 100.0 30 .................................... TAAGATCGTTTGAGTATGATAAAAAAATTA 49555 36 100.0 30 .................................... AACCGCATGATTTTAGTGATAAAAAGAAAA 49489 36 100.0 30 .................................... CAAGAGCTGTTGTAGTAACTGCTAAATCAG 49423 36 100.0 30 .................................... AAAATGCTGTGGGCATTCTGGGAGGTACTC 49357 36 100.0 30 .................................... GGATTCAAAGTACTAAATTGCTGTGCCTGA 49291 36 100.0 30 .................................... GCCGTGATCCTATACACCATCTATTTTGCC 49225 36 100.0 30 .................................... AAAAGCATTTAATCAACAAGTTAGCGCGCA 49159 36 100.0 30 .................................... TGTTTGGCGTTTGGTGGAACAAACAAGCCA 49093 36 100.0 30 .................................... AATGGCACTTGACCATTGTTTTCGGTGATC 49027 36 100.0 30 .................................... TTGCATCATTTAAGGAAACATGGGACTACG 48961 36 100.0 30 .................................... GCCAATAATGTTGCATAATATAGTTGAGGG 48895 36 100.0 30 .................................... AACTCTTGCACCCTAATCCATACATCTAAT 48829 36 100.0 30 .................................... AATAATTGGCAATATACCTGGTCTGGCCTA 48763 36 100.0 30 .................................... AAGTTGCTTGACTATTTAGAAACGTTTCAC 48697 36 100.0 30 .................................... TGCAAGCAATGGAAGCAGACGTTGCCTATA 48631 36 100.0 30 .................................... TTGATGCCGAGACTAGCAGAGCTACAACTA 48565 36 100.0 30 .................................... CCTACATATGGCGTTTCCTTTGCTAAAAAG 48499 36 100.0 30 .................................... GAATTTATAAGTACACAGTTTCATGATGGT 48433 36 100.0 30 .................................... CCGCCTGATAGTGCACATGCTATAATCAAT 48367 36 100.0 30 .................................... TGATGACAAAGAATACACAATTGCCGAAGT 48301 36 100.0 30 .................................... GGAACAAGCAATTGCAGCTAACGAACGATT 48235 36 100.0 30 .................................... TAAACAACTTATCCCTTTGTCCACGACTAG 48169 36 100.0 30 .................................... TAAGGTCAGATCATTAAAGGAATTACCACA 48103 36 100.0 30 .................................... TCGTCTTGTGCTTCGTCAATGAAATTCTTC 48037 36 100.0 30 .................................... AGTATGCTAAAAAGAGTGCTGGTAGCACAT 47971 36 100.0 30 .................................... ATATTTCTGGAATGTTTTCAAAAACTTTAC 47905 36 100.0 30 .................................... AGCAGAAAGGCGCTGTTGTACCTACTCAGG 47839 36 97.2 30 .......G............................ GCAAGATGCACAAGCCGTTCATCAAATTAC 47773 36 94.4 30 .................A..G............... GTCGTTTTCTATGTTTGACCAATCAGGCGG 47707 35 94.4 0 ..........................A......-.. | TA [47677] ========== ====== ====== ====== ==================================== ============================== ================== 44 36 99.7 30 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : AATCAAAATATTTTTGACAAGTATATGCCCGTAATTATAAAAGAATACATTGAAGGGCTTAATGAAGCAGATCGTAATGAAATATTAAAAACGTACCATAAACTAGAAGGGATAATTCAAGATTCGTTGCTACTTGAAGAACTACCATTAGAACTTGAATTTAATGAAGACTTGAAGAAATTTTTAAAGTTAGAAAATCTACATTTAGATACTAAGTTTTTAGAAGAACCATATGCTATAATTGAATCGATCTTAAAAATACATCAAAATTATAATCTCCATTCTATACCTGTTGCTTGTAATGTAGCTCATTACTTAAATTTAGCTCAGGTAGGGATGTTAAATGATCTGTTAAAAGAAATGAAGTTGAAATTAATTTTAATAGAATTCACATCTGCGGATTTTCTGGTTTTTCCAAAAGATGTTGATTATTTCTACATTGATCAAGATCTTGTTGATTGGTACTAACTGTCCGATTAAAAACTGATTATAAAATTTCG # Right flank : GTAATTACACTACTGGTCCATTGCTTTTGCAATGGGCCTTTTTATTATCTTCCAAACCGTTTTTCACCCTCAGTGCAAAAGTCTATTTTAAATGTAAGTGCCTGTTTATAAGTGTCAAGAAAAATAATATTAATAAATAATTTAAAAACGACTAAGATTGTTTTATTAGTATGTGGTTTAAGTGCATCATCAGCTTTTATGGCTGTTAACATGAGAAAAGCATCAAAGAAAGTTGGTTTAGATTATAAAATTCAAGTTTGCAGAGAAGCAGAATTTGGTGACTATGCAGATCAAATTGCTGCCTTAATGTTGGGTTTCTTACTTAAAGACGGAGTTTGGTGCGATTAAATTACAAGTACTTGACAAGGTAAAGTAATTTTAATGAAACTAGATTACTATTCAATTTCCATTTGATTTTATGGATTACATGAAATTAGACAAGCAAAGAATCATCGCGGATCTTTTCCTCAGGGCGCGGTATTTATAATGCAACTATTTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //