Array 1 1443256-1443980 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016312.1 Thermus brockianus strain GE-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 1443256 36 100.0 45 .................................... AAGCTAGGAAGGTTCTGGAGTCTAGGAACGCCAAGAACTCCACTA 1443337 36 100.0 35 .................................... ACCATCTCGTTGTAGGTGGCGAAGACAACCTCTGT 1443408 36 100.0 38 .................................... TGTTTGATTAGGGCGACCTCTTCCCGCATTTGTGTTTG 1443482 36 100.0 38 .................................... AAGATTTTTCTAGAGGCGTAGGAGTAAATGAAAGCCAG 1443556 36 100.0 44 .................................... TCCGCGATCCCCCACGCCTCAGTCATGATCTCCTGCGCCTTGTG 1443636 36 100.0 44 .................................... TGGCGGGCACGGATGATGTGCACGCCCTTGAAGACGGGCATCAG 1443716 36 100.0 40 .................................... ACTTCGGAGGACGCCCTTACCACGCGCCCGTTCGCCCCGA 1443792 36 100.0 39 .................................... AGGTAGGGCACCCCGTACCCACCCCATACCTCCTGATAA 1443867 36 100.0 41 .................................... TGTCCTCCCAGGGTAAAGGGTGTCTACCTAGCCGATAACCG 1443944 36 91.7 0 ...A..............................CT | A [1443976] ========== ====== ====== ====== ==================================== ============================================= ================== 10 36 99.2 41 GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC # Left flank : GCCTCCCGCACCACGCCTGCGGCCCGGGCGGTGCCTCCTTCCTTCAAAAGGCGGGCTAGGTTAATGCTGGTCACCTCGCGCTGTTCCATCCTTACAAGTATAGCGCCTTTAGGGCGGATTTCCTAGCCTGACGGGCCAGGGGCTACCCGCGGCGATGGTCACTTGACACGATGGAAAGGGCGCGCCTTTCGCTTTCACATGGTATAGCGAGCCCTTGAAGGGCCCTCGTCCGTCTTTTTTGGACCGCGTCAAGCGTTACGGTGAAGTGCTAGAATGGGGGTACCGGCACCCGCCGGAGGGCATCTTGACAAACGGTTTTCCCCTTGCGCAAGGGCTTTATGCGCTTTGGCCCTCTCATCGCCCGTTCCCCATGCGCCTGCCTAACAGCATAAACCCCCAAAAATGGCCCTTATACGGCGTGTGCATATTCCAGACTTCATCTTTCTCAGAAAACCCCCTCCGGAGCATGCCCTCCAGGACGCTATTCCTAAGGGGTTGCC # Right flank : TGTCTTGCCCTGCCCCCAGGCCCCTCGTGCCGCTTTGGGTGGCCCCGTGCGGGTCTGGGGCGGGGTGGTTTGGGCTTGCGGGCATAAACTTCCCGGGCAACGCATAGGGCTTTCTGCTACCATGCCCCCCATGGAACGGGTAGCGGTGGTTGGGGTGCCCATGGACCTGGGGGCGGGAAGGCGCGGGGTGGACATGGGGCCTTCCGCCCTGCGCTACGCCCGGCTTTTGGAGGAACTGGAAGCCTTGGGCTACCTGGTGGAGGACTTAGGGGACGTGCGGGTGCCCGTGGCGGAAACCCTTAGGGGGCGCAAGGGGCCCTACCTGGAGGAGATCCGCCAGGCGGCCCTGGACCTAAAGGAGAGGCTTCGCGCCTTGCCCGAAGGGGTTTTCCCCATCGTCCTTGGGGGGGACCACTCCCTTTCCATGGGCTCGGTTTCCGGCGTGGCCAAGGGGCGGCTTGGGGTTATCTGGGTGGACGCCCACGCCGACTTCAACACCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 1714219-1713219 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016312.1 Thermus brockianus strain GE-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================== ================== 1714218 30 100.0 39 .............................. CTTCCTCCGGTCGTGTGCTTGACCAGGGCGACCTCCTGA 1714149 30 100.0 37 .............................. TTCAAGGCCCGGCTTCCCTCACGGGTGAGGTCGGGAA 1714082 30 100.0 38 .............................. GTCGCGGTGGTGGACACCGCTACCAGGCGCGTGGCTTC 1714014 30 100.0 38 .............................. CGCCCTTTGCAAAATAACGATGATGAGGACGATGCCCA 1713946 30 100.0 39 .............................. GTGGTAGCGGCCACCCTAGCCTTTTGGGGCTAGGGCGGC 1713877 30 100.0 38 .............................. CTCTGAACCTGCTTCTCCACCAGAAAAGGCCGTTTCAC 1713809 30 100.0 45 .............................. GCCAACGCAACCTCAAACGCCCTGGCTCGCTCCCTATCCGTGCAA 1713734 30 100.0 38 .............................. CGCCCAACTCCAAGGCTCGGTAGACAATGCGGCCATCT 1713666 30 100.0 39 .............................. GCGTAGTGCTTGATGTCCCTCTTCCCCTTGGGGACCACG 1713597 30 100.0 38 .............................. AGGTCCGTACGAACCTCTACGAACCCCCCTATCCCGAC 1713529 30 100.0 41 .............................. TTTTTCAACCCTGAAGGAGGCTACTAGCATCCTTCCACCTC 1713458 30 100.0 38 .............................. TCAAAGTGGGCGCTAACGGCGTGCCGGAGGAGTGCCTG 1713390 30 100.0 52 .............................. GCCTCGGCGTCCTCGGCCTTCTTCCGCCTACGCTTAGGGGCGGGGGCGGCGT 1713308 30 100.0 30 .............................. TATAATAGGGACGATAAGTCCCCCACAGCC Deletion [1713249] 1713248 30 80.0 0 ...T.G.A.T.......A.........C.. | ========== ====== ====== ====== ============================== ==================================================== ================== 15 30 98.7 39 GTTCGTACCGTACCTATGAGGGTTTGAAAC # Left flank : GGCGGCGGGGCTCGAGGTCTTGGAGCCCAAGGAGTGGGAGCTCTGCTGCGGCTCCGCCGGCACCTACAACCTCTTCCAACCCGAGATCGCCGAGGCCCTAGGCCGGCGCAAGGCGGAAAACCTCAAGGCCACCGAGCCCCACCTGGTGGTCACGGGCAACATCGGCTGCCTCACCCAGATTGGCGCCTACCTCCAGGGCATCCCCGTGCTCCACACGGCAGAGCTTCTGGCCCTCCTCTACGAGGGGAAGGACCCGCTTAAGGGACCCCTAAGGAGCTAGGGCGACCTAAACCTGGTATCTCCCTATGTAAGAAGTTGGACCAAATCCACGATTGCGCCAACCCCCAATCCCCCCCAAAACCCGGGGGGGTTGACGCACTACCCCCCACCCTGCTAGCCTGACCTCAGACGGCCAAACTTTCCCACCTCGGCCGTAGTGGTTCTTGAAAACTAAGATTAGAGCTTCATGAGTGTTTCGTGTTCCTGACGATGTTGTGGCT # Right flank : ACCCAACCAGCCTGGTATGGAAGCCCTCCTGAAAGAAACCTTCTTCCACGCCCTAAGGGCCACGGACCCCTACCGCCTCACCCTCAAGGCCCTTCCCTCCTTCCGACCCGACCTGATCCTCGCCGTGGGCAAGGCGGCGGCCCCCATGCTCCGGGCAGCCCTGGAGCGGTATGGGGAAGTCCCCTACCATCTCACGTTGCCCCAAGGCCAGGAGGCCTTGGGCCTGAAAGCAGTCTTCGCCCGCCACCCCGTGCCCGATGAGGGAAGCGTGCGGGCAGCGGAGGAGGTCCTCCACCTCCTCGCCTCCCTCTCCCCCAAAGCGCGGGTCCTTGCCCTCCTTTCGGGGGGAGGGAGCGCCCTCTGGTGCGCCCCCCTGGGGATAGGCCTTAGGGAGAAGCAGGCCCTCACCCAGGCCCTCCTCCAAAGTGGGGCGGGCATCCGGGAAATCAACGCCGTGCGCAAGCACCTCTCCCGCATCAAGGGAGGAAGGGCCCTCCTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 32793-32232 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016313.1 Thermus brockianus strain GE-1 plasmid pTB1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 32792 36 100.0 41 .................................... CCCCGCCGTCTTTCGCCCGCCCAAGGGGGTTCCGGGAACGA 32715 36 100.0 37 .................................... ACCGAAAGGGCGATAGAAGCCGCCCCGCTTTTGCTAT 32642 36 100.0 38 .................................... TGTCCAGGATGGTAAATCCACCTTTTTCCAAAAAGCTA 32568 36 100.0 42 .................................... TCTTTTCACCCATCTTTCCTTGTAGGAAGGCGTCTATCACTT 32490 36 100.0 39 .................................... CAACCATAAGCAAACCGATACCGCTAGCGAACAGGACCC 32415 36 100.0 37 .................................... AGCTCTTCCCAACTAGAACGCCTAACCGCCAAAACCG 32342 36 100.0 39 .................................... GGCTATAGAACCCTGATATGTCTTTTTGCCAACCACCAT 32267 36 88.9 0 ................................CGTT | ========== ====== ====== ====== ==================================== ========================================== ================== 8 36 98.6 39 GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGATAC # Left flank : TCCTGGGGCTTTTGGAGGAGCGGTTTCTGGAGGAGGCTACCCACCCCTTAGGCTTCCGCAAGAGCTACGCCGACCTCATAGAGGTCCAGGCAAGCCGGCTTAAGGGGGCCATCTTGGGGCGGGGAACGTACACCCCCTTCTACCTCCGAAGCTAGAGGGTACTTGACACGATGGAAAGCGCACGTTTTTCGCTTTCTCATGGTATAGCTAGCCCTTGGAGGGCCTTCTTCCACCTTTTTTGGACCGCGTCAAGCGTTACGGTGAAGTGCTAGAATGGGGGTACCGGCACCCGCCGGGGGGCATCTTGACAAGCAGTTTTCCCCTTGCAGAAGGGCTTTATGCGCTTTTGCCTTCTCATCGCCCCTTTCCCATGCGCCTTCCTAACGGCATAAACCTCCAAAAATGGCCCTTATACGGCGTGTGCATATTCCAGACTTCATCTTTCTCAGAAAACCCCCTCCAAAGCGTGCCCTCCAGGACGCTATTCCTAAGGGGTTGCC # Right flank : TTGTTGTATTCTTGATTCTATGCCCAAGCGCCTCTATGCCATTGCCTACGACATCCCTGACGACACGCGCCGGGTGAAATTGGCGAATCTCTTGAAAAGCTATGGGGAAAGGGTCCAACTTTCCGTGTTTGAGTGCTACTTGGACGACAGTCTCCTGTCCGACCTTAAGACCAGGGCACGAAAGGTCCTGGACCTATCCCAGGACGCACTGCGGATTTACCCGGTACAGGGGGAGGTGCAGGTCCTGGGGGTAGGCCCCGTGGTGCGGGACGAGGCTTATGCGGTGGTTTGAGGGCTAGGTCTTAAGGAGTAGCTCTTTAAGCTCCCGCCACAACCCGTGGATGTTGCTGGCCAGCGTTTCTGCGGGCGTGGGGTTGGGCCGCATGCTGGCGTGGGCCACGTCGTTCCGGGCGTTGGTGAGTTCGTTCCAAAGGGTACCCAGGTGGGCCTTCTGGTCGGTTGAGCCCCGCTGGGCCCGCTTTTGCCACGAGCCGAGGAAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 46849-46134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016313.1 Thermus brockianus strain GE-1 plasmid pTB1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 46848 30 100.0 37 .............................. ATGGCTCAGCCACGAAGGCGGCGGGGAAGGCAACTCC 46781 30 100.0 40 .............................. AGGAAGAAGTCCACCAGCTCGTAGAGGGTGAAGACCCTAG 46711 30 100.0 43 .............................. GAAGGAAGTGGTACCCTTCTTTTTCCCCGAGATAGTCCAGGGT 46638 30 100.0 36 .............................. TTCGCGAAAACGTCTACCACTACTTGCGGGTGAGGA 46572 30 100.0 38 .............................. CGCCATTTTCCCCGCGCCCGCCCTCATGGAGTGGCCCC 46504 30 100.0 38 .............................. GTTTACTGGGCGCGTCCTGCCCCGTTTTGGATGAGCGT 46436 30 100.0 38 .............................. GACACCAAACCTTCAATGTCCTTGGCATGGAAATCGGC 46368 30 100.0 40 .............................. ATGTTCATGTGGGAAAGCTAGCGTGGCATAAGGAAACCGG 46298 30 96.7 37 ....................C......... CTTCTATAACTATCTTCGGCGGGAAACTGGTACTAGT 46231 30 100.0 38 .............................. TCCACATAGACATCGCCTTCTTCGTCGATCACCTCAAC 46163 30 93.3 0 ............................CG | ========== ====== ====== ====== ============================== =========================================== ================== 11 30 99.1 39 GTTCGTACCGTACCTATGAGGGTTTGAAAC # Left flank : TACCGGCGCCACTCCCTAAACCTGGACGTGGCCGAGGTGTTTAAGCCGGCCCTGGTGGACCGCCTAATCTTCCGCCTCATACGCCGGGACCAGCTCAAAATCGGACATTTCCTACGGGAGGGGAACGGGGTATTCCTCTCCGAGGCGGGCCGCAGGTTGGTGGTGGAGGAATGGGAAAAAACTCTCCAGACCACCTACAGGCACCTCGTCCTCAAGCGTTCTGTATCCTACCGGACCACCATACGGCTAGAGCTCTACAAGCTAGAAAAGCACCTTATCGGAGAGCAATCCTATACTCCTTATCGGCTACGATAATTGGACTTAGTCCAAGATTGCGCCAACCCCCAATCCCCCCCAAAACCCGGGGGGGTTGACGCACTACCCCCCACCCTGCTAGTCTGACCTCAGACGGCCAAACTTTCCCACCTCGGCCGTAGTGGTTCTTGAAAACTAAGATTAGAGCTTCATGAGCGCCTCGCGTTCCTGACGATGTTGTGGCT # Right flank : TTTTCCTAAAACCGCCGAGGAAAACGTAACGCCTACAGTCGGCGGTACTTACGCCTCACCCTCAAGCCCGGTCAGAAAAAGGGAGGGCTTACCCGAGTCCGAGCTTTTCCAAAACCAGTCGCAAATCCGGGTTGCGCTTAGCCCATTCCTTCCAATCCTGGCGGTTCTTCAGAAAGCCCTTAGATTCCAACGCTCCCTTGAATAGGGCCACCTCCTCCGGCGAAAGGGCCAGGATAGTTGGTGCTTCTCGCCGTAGGAAGGCCTCCAGTTCACGGTAGGAAGTGGCCTGAAGGCGCACGCGCAGGGCCTCGTACTCAGGCCGCAGAGACTTGGCATCCGCCTCTTGGGGCGGCTCAGGACCCTCCAGGTCCAGCCGACCATAACCGGAGGAGGTCTTTGCCCCCACCCCTTCCTCGGCAAGGGCCCAGGAGAGGATTTGCCAGGCAGCGTTAAGCCAAGGCTGGGCGGCCTCGAGGCCCACCCCTGGCGCCGGGGCCAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 55531-56380 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016313.1 Thermus brockianus strain GE-1 plasmid pTB1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 55531 30 100.0 39 .............................. CCCGCTCCAAGGCATCCACCACGGCGTGGTAGGGGTCTT 55600 30 100.0 38 .............................. TGGCGAGGTCGGCCCGCCAGTAGAGGGGGAGCTCCATG 55668 30 100.0 36 .............................. CGCGCAAAGGGCTGCGGGCTCTCCAGGTCAAAGAGG 55734 30 100.0 40 .............................. GGGGTGATGGTGAGCTGGACCCCGCCCCCCGAAACCACGG 55804 30 100.0 38 .............................. TTCCAGTAGGCGGCTTCCCAGATGGCCTCGAGGGCCTT 55872 30 100.0 40 .............................. CTTCCGCATGGACCAACTACTCCAATACTTGGTCCACTAT 55942 30 100.0 39 .............................. TCGCGCTCAGGGGCCGGCCCCTCGGGAGCATCCTGCTGG 56011 30 100.0 36 .............................. TTCGCGAAAACGTCTACCACTACTTGCGGGTGAGGA 56077 30 100.0 37 .............................. TGGGGCATAGGGTCCGGGGACGGAGAAGCCTCCCTAG 56144 30 100.0 39 .............................. TCGGTCCACTGATTTGGATTAGGGGCAGGGAGAAGCCGC 56213 30 100.0 40 .............................. GGAGGATGACCCCACGGTGTTCCAGATACCCGATGAACGG 56283 30 100.0 38 .............................. GCGGGGAGGACGATCTTCACGCTCCGGGAGGGCGGGTA 56351 30 93.3 0 ...........G.................G | ========== ====== ====== ====== ============================== ======================================== ================== 13 30 99.5 38 GTTCGTACCGTACCTATGAGGGTTTGAAAC # Left flank : GGTCCTGGTCTGCCCGGGGCTGGCCATAGGCGTCCTGAGGGTGTAGGGGCATGTACGTGGTCATGGTGTACGACGTCTCCGTAGACCGGGTGGCCAAGGTGCTCCAAATCGGACGCCGCTATTTGACGTGGGTGCAAAATTCTGTGCTGGAAGGCGAGCTTTCCCCAGCCCAGCTTGCCAGGTTGAAGGCCGAGGTGGCCAAGGCCATTGAGCCCACGGATGCCGTTCGCTTCTACGTGCTGCCAAGCCGCGCCGTCCTGAGGATAGACACCCTGGGCCAGCAGAAGAACGAACCCGGCCAGATACTCTGAATTACTTGGCATAGACCCAATTTGCGCCAACCCCCAATCCCCCCCAAAATCCGGGGGGGTTGACGCACTACCCCCCACCCTGCTAGTCTGACCTCAGACGGCCAAACTTTCCCACCTCGGCCGTAGTGGTTCTTGAAAACTAAGATTAGAGCTTCATGAGCACCTCGCGTTCCCAACGATGTTTTGGCT # Right flank : GGTGAGGACAGGGGCCCCCGGGCTGGGAGCCCGGAGGTTCGTACCGTACCAGGGTTTGAAACAAGTTTGTCCCTACGCAAAGAAGAGGTGGGTTTCGTCTACCAGGAGCAAGACATCCCTTAGCGGCATTAAGGCCTAGCCCCGGGCGTCCAGGAAGGGACGGGGCTTGTAGCCTGTCACGTGGAAGATCACCTGCCAGTAGCCTGCAAGGGCAGCGGTGGGGTTACGCTCCTCCTCCGCCGTGTAGCGGTGTTGGGCGAACTCAGCGAACTTCCTTTTCCGCTTCACGATGAGGAGATGCCGGTAGCGGCCATCCATGAGGCGGATGATGTGCCAGGCTAGGGTGGACTTCCCCAGCCCGTTTTCCTCGCAATGAGGATGCGAAACTCCTGCCTACTGGCCATAGGTAGAGAGACGGAAGGCTTTGCCCTTTGTGAGGAGCGCGGTTACCAAGATGTTCGTATCAAGTACGACCTTCAAGGCGAGCGAAAATCTCTTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTACCGTACCTATGAGGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 4 134393-135022 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016313.1 Thermus brockianus strain GE-1 plasmid pTB1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 134393 37 100.0 37 ..................................... AGGGTGAGGGCGTTCAGGAACCCGGTGACGATGCGGA 134467 37 100.0 41 ..................................... CATCGCTGAGGCAGCCCGCCGATAGTGCGGGGCTGCTCCAG 134545 37 100.0 36 ..................................... CTGGACCTCTCGTGGGAGACGGTCCACGGCCTGGGC 134618 37 100.0 36 ..................................... CTCATCTCCCCGGAAGGGGTGATGGCGCTAGGGAAG 134691 37 100.0 35 ..................................... CTCGTTTTCCGGGAGCGGTGGGAAGACGCCACCTG 134763 37 100.0 37 ..................................... TTCGTCATCCTCTCACCTCCACCCCCACGCTACCACG 134837 37 100.0 38 ..................................... CCCACCGCCTGGGGACAGTAGCCCGACTCCACCCAAAC 134912 37 97.3 37 ..................T.................. ATCTCCAGGGGGCGCCCCACCCGGGACACCATCCCTT 134986 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 9 37 99.7 37 GTTGCACCGGTCCGAAAGGACCGGTGAGGATTGAAAC # Left flank : GTGAACGTGGGGCGTGTAGATGTTCTTGTAGCGTATGACGTGGATACCCTTTCGGAAGAGGGACAAAGGCGCTTAAGAAAGGTGGCCCAGATCTGTAAGAACTACGGGCAAAGGGTCCAGCTTTCCCTCTTTGAATGTCGTCTCAGCCTAGCTCAGTTAGAGGACTTGGAGGCCAAGCTTCTCAAAGTCATGGACCTGGAAAAGGATAGCCTTCGGATTTATGTGCTTCACGGAGGTAGGGCGAAATCTCTCCGTGCCCACGGTAGGGACAAGTACATAGACTTTGACGAGCCCCTCGTTCTATGATGTCAACGAAAGCGCGAACCTCCTTTGGGTGCGAAATATTTGGGGGGTTCGCGCAAGGCGGCAAACGCCGTCGGGGAGCTTGAAAAGGAGTTTTGGACCGTGTGCTCCAGGGGTGCGGGGGAAGGGGGTTTCAGGCCTGGTCCGCGCAAAAGGGGTTGGTCCTCACGTCCAGAAGGCTTATCATGGAGGGAGGA # Right flank : CCTTCCAGGAAGAGGCCGTTTTCCAGGGCACGCTTGAGCAGGAAAACAAGCTTCCCCTTGCGGTATTCCCAAGCTCTTTGGCGGACGAGGTAGGAGAGGCTGGGCTCTTCCCTCCAGGCCGCCTCCACCTCCCTAAAGGCCTCGTCCAGGTGTTGCGCCACGTGGTCCTTAACCGCCGAAGCCTCCCTCTTGCCCGCCTCCAGGGCCCGCCGCACGGCCTTGGCCAGGACCTCGTGGAGGAACTGCCCCTCATCGGCCCGCTCCCCGTCCCCCGCTTCCCCATCCCCCCGGAGGCGGAGGCGGTGCTTCGCATAGAAGCGGAAGGGGCAGGTGACGAGGTCCTCGAGGGCGGAAACGGAAAGCCTCTCCGGAGGCCAGGGCTTCCCTCCTACCGCCAGAGCCGGGGCCCAGGGCTTTGCTCCTCCGGGCAGTACTTCGCCCCCTCCAGCTCCAAGGCCCTCTCCAACTGGGCCTTCAGGGGATCGCCCTCCCAGTGGCCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCGGTCCGAAAGGACCGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.10,-15.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA // Array 5 253501-251952 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016313.1 Thermus brockianus strain GE-1 plasmid pTB1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 253500 29 100.0 31 ............................. CTCCCCGAGATCATTCAGAGCGAGCCCATCC 253440 29 100.0 32 ............................. CTGGTGGACGCCCGCACGGGGAAGCTCACCGT 253379 29 100.0 31 ............................. GGAACCTCCTCGGAGGAGCCTCAGGAGGTGC 253319 29 100.0 32 ............................. GGGGCCGCGTGCAGCCTCCTCCAACGCACCCA 253258 29 100.0 32 ............................. CTACTAGAGCACCCCCTCCTAGAGAAGTACAA 253197 29 100.0 32 ............................. TCCGTGTTGGAGAAAGCGGAGGGGAGAACATC 253136 29 100.0 32 ............................. ACGTGGTGGTGGTCCTCCCGCTCGGGCAGGGC 253075 29 100.0 32 ............................. GTACCCTGACGTGTGGGAGAGGGTAGAAAGAG 253014 29 100.0 32 ............................. TGGAGGACCTGAGCCGGGTGGCCTCTCTCCTG 252953 29 100.0 31 ............................. GCGTAGACCAGGGCGTCCACCATGTCGTCGT 252893 29 100.0 32 ............................. AACATGGACATATCCCTCATCAAACTCGCCAT 252832 29 100.0 31 ............................. ACCTGGGCGGCGCCGGCCACCTCCGAGGAGC 252772 29 100.0 31 ............................. AACAGCCAGTCCAGCTACTGAAAGGCGTCAT 252712 29 96.6 32 ............................T ACAGCCACGGCCCCGACCAGTGCCACCACTGG 252651 29 100.0 32 ............................. TACATTTCCTTCCGCAATGCGGCCAATAGCGC 252590 29 100.0 32 ............................. GCGGCCCACTGAATAGGCGACCACTCATCAGA 252529 29 100.0 33 ............................. GATGAGCATCAAGCAGGAGTTAGCCCAGACAGT 252467 29 100.0 32 ............................. TGGGCGGCATTATTCGGGGGGGGTATGAGGAG 252406 29 100.0 31 ............................. AAAGGCCCCCACAACGGCACCCCGATAGCGA 252346 29 96.6 32 ............................A TCACCTTGTAAGGGTCCTTCTTCGTCAACGCC 252285 29 96.6 32 ............................A GGTTGCGGTTGATTTATGCCATCAGGGTATCC 252224 29 100.0 32 ............................. GTGTGGGCCGACCTTGACCAGTACGGCAACAT 252163 29 96.6 32 ............................A GCCGGCCAGGGCCGCCCCGTAGGAGGCCCCCA 252102 29 100.0 32 ............................. ATGGAGCCTTCGCCACGGCCTCGGCGCTTCAT 252041 29 96.6 32 ...........................T. ACCAGGTTGGCCCCAGCAATGTGCCGCAGGGT 251980 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.2 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GCTTTTCTAGCGCCGCGCCGTACTGCCGAGTGGGGGCTTGGTGGTACAGGAGACGGCCAGCAGCGAAAAGGGCTAAGGCTTCTACGGGATGGAGGGGAGGGGGGCGGTCGGGTATGTGGTAAACGCCACGCCTAACCGGCTCCACCGGGTAGCCTTGGAGGGAGAGGGCCTCGAGGTCCCGCTCTATCGTGCGTTCGCTCACCCCGAAGTGGCGGGCCAGCTCGACAACCCGGTAAGGCCGAAGACGAAGCCGCTCAACCATCTCCAGAAGGCGAGCACTTTTAGACACGCTTGCCATTACCTTCTGAGTCTAACGCTTTTCCGCGGCCGTATGTGGTATTATACCCTAGGCTGGGTGACAGGTCTATTCGCATAGCCCACCAGCAGCAGATCTGACCCAGTGGGGATCTTGACAACTCGCCTTTTGCCCTTTTTTGTACCCTTTCCTCATTAGACACTTAGGTGGGGGGCAGAAAGGGTTTTCGCCGTCTAGGTCATGT # Right flank : GTGAGCTAGGCTTAGCTTTGCCGAGCCTGGCTGCCAGATGGGCCTTTTTCACTTCCTCCCTGCCCTTAGCTTCCTGAGGTGGTGTGCGGAATAACCTTCATGTCTACCCTGGTTCGCCAGGGGCTTGTGCTCCATGCCTTTTATCGGTAGACTCCTCGCCAACCGGAGGTGCACCGTGCGGTGGTGGCTTTGGGTTGTGGTCCTTTTGGGAGTTACACTTGCGCAAAAGCCCCAGATCGTCATCGGCACCGGGGGTGTGGGTGGGGTGTACTTTTACTACGGCACGGCGGTGGCGGAGATTCTGAACAAGGCCGGTGTGGTCCAGGCCCAGGCCATGCAGTCGGGCGGCTCCATGGAGAACCTCATGCTCCTCCGGGACCGCACGGACCCCACCCGGGGGCTCTACTACTGCGGCACCGTGCTTCCCGATGCCGCCCTCCTGGCGTTCCAGGGGGAGGAACGCTTTCAGGGGAAACCCGCGCCCGCGCGCGTCCTGTTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 263194-264862 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016313.1 Thermus brockianus strain GE-1 plasmid pTB1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 263194 29 100.0 31 ............................. GCGTTAGGGAGGGCGTTGTTGCCCGGATGCA 263254 29 100.0 32 ............................. TATGTTGATGCCTTCCGAAATCTAGCTCACGA 263315 29 100.0 31 ............................. AGGATGAGCCCGGTGGAGAACGCATCGGCAA 263375 29 100.0 32 ............................. GAGGTGGAAGATGGTAACGGCAGAGGCTAGGA 263436 29 100.0 31 ............................. CCTCGGCACGGAGCACCTCCACGCTCACGGC 263496 29 100.0 31 ............................. GTGGCTTCCGCCCGCTCATTCGTCAGGGCGT 263556 29 100.0 32 ............................. AGGAGGCCTTCTTTGAGGCTGAGTTTGGAGGC 263617 29 96.6 32 ............................A GAGCAAGTGGCTCAGCGAGGAACAGGTCGGGA 263678 29 100.0 31 ............................. AAACCGCGAAGGCGCTATACGAGGCGGCAAA 263738 29 100.0 31 ............................. TCAAGGGGGACCCCCGCTTGCGGTGGGCCGA 263798 29 100.0 32 ............................. TAGGTAATCACCCCGAGGCTATTCTGGTAGAC 263859 29 100.0 32 ............................. TTAGACTTTGCGTTGCCGCGCCTCATACTCTA 263920 29 100.0 32 ............................. AGGGCGATGCGGTTCTTGTGGTGGTAGGAGTC 263981 29 100.0 32 ............................. TGGGGTAGGCGGCTTATTGGGGCGCCCCATGG 264042 29 96.6 32 ............................T ACAGGCTCACCGCCGTGCCTAGGTCCAAGAGC 264103 29 100.0 32 ............................. CCGCGTCCCTAAGGGGCGACGCGATTATAGCC 264164 29 100.0 32 ............................. TGCCCGTGGCCGCTAACGGTTACCGGTGTATG 264225 29 100.0 32 ............................. CCGCGTGGCGCCCCCTCCGCCACCTATGACCC 264286 29 100.0 32 ............................. AAGTCTATCCCGCCCCAGCAATGGGCGGCTTT 264347 29 100.0 33 ............................. CTCCGGGCCATTCCTGAGCACCTTATCTATACC 264409 29 100.0 32 ............................. TCCCACTCGGAGTAGGCGCCCACGTCGGACGC 264470 29 100.0 32 ............................. GAACTGGTGGAAGGCTACTGGCAGGGGAGCAC 264531 29 100.0 32 ............................. GACAGGGTTCCCTCCGGCTTGACGGTGGTTTT 264592 29 100.0 31 ............................. TCTTTGTACCCGTGTTTCCGCGCAAGCCAAA 264652 29 100.0 31 ............................. CCTACGAGGCCCTTAGGCGAGCGGGGCTTGT 264712 29 100.0 32 ............................. AGGACGGGGTGAAGGCGCTAGGCGCTTCCCCC 264773 29 100.0 32 ............................. CCAACGTTGCCCCGAAAAACCTATTACCATTT 264834 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTAGTCCCCACACGCGTGGGGATGGACCG # Left flank : CGAGGACCTCCTTTCGGAGGAAGACGACCCCACCCTCCCTGGGGGTCTTTGGGACCCGGAGGGGGTGGTGGAGGGGGGCGTGGCCTATGGTGGTGATGGTGTTGGAGAAGGTGCCGAGGAGTCTTAGAGGGGAGCTTACCCGTTGGCTTCTGGAGCTAGATACGGGCGTGTTCGTTGGGCGCGTAAATGCTACGGTCCGTGAGCTGCTTTGGGCCAAGGTGGTGGAACGGGCCGGGGATGGACGGTGCGCCATGGCCTGGCGTACCAACAACGAGCAGGGTTTTGCGCTAAGGCTTCATGGGTACACGGACCGCATCCTCCGGGACTTTGATGGTATACTCCTCATAACGGTGCGCAACGCCGAGGCGATTCGCAAAGCTCAAAAGCTACAACGCCTCAATAAAGGGTTGCGCGAGGATCTTGACAAGTCAACCTTGGAATAGATTCTCTTAAAAGACATAAAGGGGGGTGAAGGGAAGTTTTTGCCGTCTGGGTCAAGT # Right flank : GCTGGGAACCCCCATCGCCCAGGTGGAACGAGCCATCCCCGGGAACCATGAGGCCAGTCGCGGTCTGGGGGTCCGCCCCGTTGCGCAAAAGGGCTTCCCCTACACCCATACCCGCACCTCCACCTATCCCCCACGGCCACGAAGAAGCGGCGGGGGGTATCCAGGTTGGGACCGAAAGAAAAGGGCTCCAGCAGGTGGGACACCGCAGAAGGCGTTGCCCCCATGCACCAGGCCACCTCCCGGGCGGTGAGGCCCGAGGTCTTCAAGGCCCGCCTCAGCTCAGGGCTCACGGGGTTCACCAGGGCGGGGGTCACGTAGGCCAGCAGTTAGTCCCCATCTCCCGCTCCGCCTCCTCTTCAGGGGTTAGGGCGCGTCCAGGCAAAGGGAGAGCCCTTCCCGCCTCCCTGCGCTCCAGAATGGCTAGGGCCAAACCCCTCGCCAGGCTCCGCTCCACCTCCTCAGGGGAAGCCTTCCCCCACACCGCCACAGGCAGGTCCAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //