Array 1 651759-652506 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062939.1 Bifidobacterium subtile strain KCTC 3272 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 651759 31 100.0 35 ............................... CCCTATGCAAGCAGCGGGCAACACGTACATCACGC 651825 31 100.0 35 ............................... CGGCTCGCGCCATACGCGCTCGAACTGGTAGTCGT 651891 31 100.0 34 ............................... ATCGTCTGTCTCCTTGGTTGACGGAGATCAGGTT 651956 31 100.0 33 ............................... CGATAATCCCGAATCGGCTGAAGCGATGGACAC 652020 31 100.0 34 ............................... ATCATTGAGCGCGAGAAGACATTTAGAAGTGCAT 652085 31 100.0 34 ............................... CCTTATGCTCTTCGCCAGCCGAACAGGCTGACGT 652150 31 100.0 35 ............................... TGGTTCCGCTGATACGCGGGTTCGCTCGTGCTCCA 652216 31 100.0 35 ............................... TTGTTGCCATACGGAAGGATGTACGCCTGTCCCAG 652282 31 100.0 34 ............................... CCGCGTCGTCATGCTCGAATGAGACGTCGATGGA 652347 31 100.0 33 ............................... GATCCGATTGCGTCTATTGGCTCTCCGGCCTGG 652411 31 100.0 34 ............................... TGATACTGATAAGGAATGATGTCCGCATCCGCAG 652476 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 12 31 100.0 34 GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Left flank : GACGACTTCGTCAGGTCGCTAAAACATGCAAGAAGTATGGGCAGCGTGTGCAGAACAGTGTTTTCGAATGTTCTGTGACGCCCTCGGATTTTCTGACACTTAAACATGATTTGCACAAACTCGCCGATTTGGAGTCGGATAGTCTGCGGTTCTACAATCTTGGAGCGAACTACTCGAATCGGATTGAACACATGGGAGTGCAACGGCATCTGCCCGATGATAGTGTCATGATGGTGTAGGTGATCGGTTTGGCTAATCGATGATGGACTATAAGGGGGTTTGTGTCCCTGTGCGAGAGTGAAGCGCTCATGGATTCCCTGGAGGTTCGCACCTGATGTCAGGCTACGGTTCGCGGGAAACAAAGAATTTTCAGTGGCAATAGGGTCATCTGATTGTTGTCTGATAACGTAAGAGTGCTTTAAGTGCGGGTTTGTATGGACTTGTTCTCATTTTTGATATAGTTAAGTTCGCATGGTGGGATATTGGATTCCATTTGTGCG # Right flank : TGCTGCCAACTGAGTATTGTTTGTGTGTCCATATGTTTTTAGTCAAGTTGGTTTTTTGTGGTTGGTCACTTATTTTTTTCGGGTTTCGGCGTGGAGCGTGCTGTTGGTTATTGGTTGTGGATTTCCTTGCCGAACATGAGGGCTTCGCTCACGCGCCGGCTTGGTCCGGTGAATTCGATGAGGCGGCCGTGGTGGACGATGCGGTCGATGATCGCGGCGGCGAGTTTGTCGTCGGCGAAGATCGTGCCCCATTTGCTGAACTCGATGTTGGTGGTGAAGATGATGCTTCTTCTCTCGTAGCTGCCGGTGATGATCTGGTAGAGGAGTCTGGCGCCGTCGATGTCGAAGGGCACGTAGCCGAACTCGTCGAGGATGATCAGGTCGGCGCGCGCGAGGTCTCTGAGCAGCGCGTCGAGGGCGCCGTCGCGTTTGGCCTTGCCTAGCTGGAGCACGAGCTCGGCGGTCTGGTGGAAGCGCACGTTCATGCCCTGGCTGATGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 654981-658712 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062939.1 Bifidobacterium subtile strain KCTC 3272 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 654981 31 100.0 34 ............................... GACAATAGGACGTAGTAATGGCCGTACTTTTGAG 655046 31 100.0 33 ............................... AACCTGATCTCGAAAGGAAAGCACGCATGAGCG 655110 31 100.0 33 ............................... GCCACGCAGCTCGCCATCGCCGGCGCCAGTGAG 655174 31 100.0 34 ............................... GGCCTGAACTGGCAGAACTGCGCGCGGATCGTAT 655239 31 100.0 34 ............................... TCTCAGGCCAGTTCGATGGAGCAGCTGCGCGTCT 655304 31 100.0 35 ............................... GCTACCGGCCCTACCGCATAGGATTCGGTCACGGT 655370 31 100.0 34 ............................... CGTGGATTATCCGGCGAACGGTCCTTTGGTTGTT 655435 31 100.0 34 ............................... GTCGCTTACACGCTGAACGTGGACAGTCTGGCGG 655500 31 100.0 34 ............................... TGATGCAGTCGCAGTTGGATCAGGCGGCCCGCGT 655565 31 100.0 35 ............................... TTCCGGAGTCTCTGCGGGCGTTTCGGGCGTCACGG 655631 31 100.0 34 ............................... GCCGGAGTCATCAACAGCAGCATCGACACCGACT 655696 31 100.0 33 ............................... TCCTTGCTGGCAGTAAGTGCTGCCTTCGTCTCC 655760 31 100.0 33 ............................... CCTTGCCGGTTTTGCCGTCCTTCCACGAGTAGG 655824 31 100.0 35 ............................... TATATCGTCTCGAGAGGCGGAGGAACAGGTCAGCG 655890 31 100.0 34 ............................... ATCTACGTCAGGCAAGAAGGGGGATACCGAGGAG 655955 31 100.0 34 ............................... TCGTCGATCATCCACTGTCTGCCGACCTTGTGCG 656020 31 100.0 33 ............................... ATCCGCCGGGCGGTCCCTCCTCTTGCTCTTGTC 656084 31 100.0 35 ............................... ACGATCACTGGTCATCACTAGCTCACTGCTGGCCA 656150 31 100.0 32 ............................... GGTTCAGGTGACTTCTTCTGCAATCTCGCCTC 656213 31 100.0 34 ............................... CTACCCCGATGCTGGTCAAGTACGTGGCAGCTGA 656278 31 100.0 34 ............................... CTATCGAAAGACGCTAGAGGCAGGCAGCGGTCCA 656343 31 100.0 33 ............................... GAGAACTCCTCCACCCAGTTATACACCATATTG 656407 31 100.0 33 ............................... GATGCGCCGTTTATGCTCGCGGTCATGCGGGCA 656471 31 100.0 35 ............................... TGGCTGAGGCTGGCTGTGCCATGGAGAACGACGAG 656537 31 100.0 35 ............................... TAAATTGAGGGCGTACACTTGTGGGTACTGATCTG 656603 31 100.0 34 ............................... AGAACGTAGACCGAGTCGATGTTTTCGAACGACG 656668 31 100.0 34 ............................... ACATGGTCGAATGCGGTCAGATCGCCTGCTGAAT 656733 31 100.0 34 ............................... CTGTTCTGGCGATGGCTTGCATGTGTTCGTGCGG 656798 31 100.0 34 ............................... TGCTCAATGCTCGCAAGCCGTGGGTTTGTCTATT 656863 31 100.0 33 ............................... GCGCAGGCCGGCACCATCGGAGCCGAGGGCGGC 656927 31 100.0 33 ............................... CGGGCGCTATCGGCGGGTTTTTCAGCGGGATCG 656991 31 100.0 33 ............................... GCCCAGAAGCAGGCGGACGCGAAAGCCAGAACC 657055 31 100.0 34 ............................... AAGACCACCGTGTCGCAGACGTATGACACGAAGT 657120 31 100.0 33 ............................... TCGAACCCGCCGTCAATGACCATTTCCTGCGCG 657184 31 100.0 33 ............................... GCGAGCGAGCCGATCAGGTCGACCGTCCTCCCG 657248 31 100.0 35 ............................... TCTGGCTGAGATTGCGGGATTCTTCAAGATCACCG 657314 31 100.0 35 ............................... GCGACCAGCTTGTCGGTACTGATCGACCCATCCGC 657380 31 100.0 34 ............................... CTCTGGCGGGAGTCGAACCCGCTCCGGCATGGAG 657445 31 100.0 34 ............................... GAAACCGGCATGCGCCAGGGGGAGCGGTTCGCCA 657510 31 100.0 34 ............................... CTGTTCTCCCCCACGCTGACGAACTTATCCGCGA 657575 31 100.0 35 ............................... CGTACGGCAGGCGAAGAAGGTGGCGGGCATCACCG 657641 31 100.0 34 ............................... AGTCCAGCAGGATCGTCACACGGACGCAGAAGGC 657706 31 100.0 35 ............................... TCCTTGGCGTGCGGGCGTTCTACGGCGACCATGGG 657772 31 100.0 35 ............................... ATCTGCTCTTGATATTCCTTGGCTTTCGCAAGGGC 657838 31 100.0 33 ............................... CGAGCTTCGCCGCCAGAGTCGCCGGTGGCGCGA 657902 31 100.0 35 ............................... GACAGAGAGATGATACGAATGGATATATATCTGGT 657968 31 100.0 33 ............................... CTGCACCGCGAAATACCCCCGTACGCGCACCCA 658032 31 100.0 34 ............................... AACCTGATCTCGAAAGGAAAACACGCATGAGCGC 658097 31 100.0 33 ............................... AACCTCGCCCAAGTCGATGCCCAAATCCACCAG 658161 31 100.0 35 ............................... AACAGTCAATGCAGGAGGAGCTATGAGCGCCATAG 658227 31 100.0 33 ............................... TCATGGAGCGGGTAGGTACCGGGGATCCCGGCG 658291 31 100.0 33 ............................... CTTGAGCCATTCCGCAGCCCACGCGACGCCATG 658355 31 100.0 33 ............................... CGTATACCCATCAGCGTCACCCATGCTGCACAC 658419 31 100.0 34 ............................... CCGCTCAAAATCGCAGAAGGCTTGGTCGGCAAGG 658484 31 100.0 35 ............................... TCGAACCATGCGAGCGGATACTTGGAGCGGGCCAG 658550 31 100.0 36 ............................... TCGACCGCTTGGAACTGGATCAAAACAACTGTTATC 658617 31 100.0 34 ............................... GCCAGCGCCAGTTGGGCCGCATCGTTCGTCTGGC 658682 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 58 31 100.0 34 GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Left flank : CCCGCTCTCGCGCTCGAACGCGAACTCGCGCTTGAGCTGCGCGACCTTTCTGGTCACCGTCGACAACGAGACCTTCACCCCATGCTCGTCTCGAAGCCGCTCCCAGACCCTGGTCGCTGTATGCCGCTGCTTGCGCCACGTGACACGATCCTCGGCGAGCCACTGCTCGATGACAGGCGTCCACTCATCAAGCATCGAGGCCCGCCCCTTCCTGACCGGCGGCCTGGCCGACAGGTCATCGACCTTCAGATACTTGCGCACCGTCGGCTCGCTGACGCCTTCGGCGCGCGCGATCGAAGCGATGGACTCGCCCTCCCTGCGCCGACGACGGATAGAATTGATTCTGGACATGTTGATCATTGCCTTTCCGGCCCTCCTCGATAGATAACGAAGCACTACCAAGGTACAGCCCGACTATGGTCAGCATGCCCCACGCCCAAACCCGAAAAAACTACCTGACCAAAACCACAAAAAACAATTGAACCAAAACAGTCCATACG # Right flank : TTCCCGGGTCCACCGTCGTCTCATAGCTGTTTTGGTTCAATTGTTTTTTGTGGTTTTGGTCAGGTAGTTTTTTCGGGTTTGGGCGTGGGGCATGCTGACCATAGTCGGGCTGTACCTTGGTAGTGCTTCGTTATCTATCGAGGAGGGCCGGAAAGGCAATGATCAACATGTCCAGAATCAATTCTATCCGTCGTCGGCGCAGGGAGGGCGAGTCCATCGCTTCGATCGCGCGCGCCGAAGGCGTCAGCGAGCCGACGGTGCGCAAGTATCTGAAGGTCGATGACCTGTCGGCCAGGCCGCCGGTCAGGAAGGGGCGGGCCTCGATGCTTGATGAGTGGACGCCTGTCATCGAGCAGTGGCTCGCCGAGGATCGTGTCACGTGGCGCAAGCAGCGGCATACAGCGACCAGGGTCTGGGAGCGGCTTCGAGACGAGCATGGGGTGAAGGTCTCGTTGTCGACGGTGACCAGAAAGGTCGCGCAGCTCAAGCGCGAGTTCGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 661188-666751 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP062939.1 Bifidobacterium subtile strain KCTC 3272 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 661188 31 100.0 33 ............................... CGATTACATCGTTGAGCTGCAAGCGCCCGGCGA 661252 31 100.0 35 ............................... TCCCAATGCTGTTTGATGATCAGCCGGTGCGTCAA 661318 31 100.0 34 ............................... TGCTCGGTGGCGACACTGCCCAGTTCGGCCGCCA 661383 31 100.0 33 ............................... GTTAATTCGCAGACGGTCCAGGTAGACGCTGGA 661447 31 100.0 35 ............................... CAAGCGTTCTGCGCATTCGTACCAGCAGCCCGGAA 661513 31 100.0 34 ............................... TACGGCGTCTCGTCCGGCAACGCCGTGTGCTCGA 661578 31 100.0 34 ............................... GAAATCAGGTTGAATAGCGTGCAGCCGCTCGCGC 661643 31 100.0 34 ............................... GGATACAAAAACGACTATGCGTGGCAGCGCTATG 661708 31 100.0 34 ............................... GCGTTGGCTATCAACGCGCGGCGAGCCGCCCACT 661773 31 100.0 34 ............................... ACCATGTGGCTGGCGACCATCGACACAAGCAGGC 661838 31 100.0 33 ............................... CATTGAAAAAGCACTGGCGAATGGTGTCAGCGG 661902 31 100.0 35 ............................... CCTTCGGGCTATGCGTGTCAGCTCGTAGATGCCGA 661968 31 100.0 36 ............................... TCGGAGATGACTGCGGCGGAGGTGCTGGTGGCGCCT 662035 31 100.0 35 ............................... GCCGTCTGCTCCTCGCTGTTGGCGAACAACTGCAC 662101 31 100.0 35 ............................... CCCGATTCGGACGAGGATCGCGCCATGTGGCGGCT 662167 31 100.0 35 ............................... TTCAACGTAAGGAGCCATATCATGGCAACATTTGG 662233 31 100.0 33 ............................... AACCTGATTTCGAAAGGAAAACACGCATGAGCG 662297 31 100.0 35 ............................... GTCTTGCGCGTTTGGAGGAGAGAGAAGACACCGGT 662363 31 100.0 35 ............................... ATCGACTTCGCGCAGAAGATGGGCATGTCCGCCGG 662429 31 100.0 34 ............................... AATCATCAACAATCCCGACCCCGAATCACGGCAG 662494 31 100.0 34 ............................... CAGTACATGCTCTCCGACCACAAGGGGAGCGAGC 662559 31 100.0 35 ............................... TCCAAGCAGGCGAAGGATGCTACGGGCGGAATCGG 662625 31 100.0 33 ............................... CTTGCCGTGGGGCAAGAGACGGCCGCATGAACA 662689 31 100.0 34 ............................... ACGCAGTGGGAGGCGCAGTTGCAGGTTACGTTCG 662754 31 100.0 35 ............................... ATCGGCCTTTGGTCGTATGTCGATGACAATGGCGT 662820 31 100.0 35 ............................... TCGACGGTTTCGCCCGGACGCGGCAACGGCTTCGG 662886 31 100.0 34 ............................... TCGACGCTCTCAACAACAAATAAGGAGTAATCCC 662951 31 100.0 34 ............................... TTCCAGAGTCTGTGGAATGGCATTGTAGGGTTTT 663016 31 100.0 34 ............................... GATGCGACCATGTTGCACTTGTTCCAGGCCGTCC 663081 31 93.5 34 .....................AA........ CTTGACTTGACCGTCATCGATGATGATCGCTCCG 663146 31 100.0 34 ............................... CCATTGCTCCTATGCCGTCATCTTCTCGGTCGTT 663211 31 100.0 34 ............................... AGGAACAGGCCGGTGTGATCCAGAAACTCGAACA 663276 31 100.0 33 ............................... CACTCGCTCGTATTGTCCTTCGAATCGGTGAGG 663340 31 100.0 34 ............................... CGTAACCCCCGCTCGGCCTCGGCAAGCCTGTCTC 663405 31 100.0 34 ............................... ATCGGATCGAGGACTGAGCATGGCTGTGAAACGC 663470 31 100.0 34 ............................... CATGGAGCAGAGGAACGCCGCGCTGCAGACCATC 663535 31 100.0 35 ............................... ATCGACCGTTGCATACGCCTGTGGAGCAATAAGGG 663601 31 100.0 33 ............................... CATCATGCTGCGCCTGCTCTCCGCAGGCTCGGG 663665 31 100.0 36 ............................... GAAAACTATCCGAACGCGATCTACCAGCGGATCAAA 663732 31 100.0 34 ............................... ACTCCCGCGAAGGTGGTGGACAAGTGAATGTCAG 663797 31 100.0 34 ............................... GCATCGGCAGCATCAGCCTTGTCCTGCGCGGATG 663862 31 100.0 35 ............................... AGGCTCATGCGCTCATCGAGCGAACTGGCGAACAG 663928 31 100.0 36 ............................... TATTCTGCGAATACGGGCGTGATCATCAAAACTCTG 663995 31 100.0 34 ............................... GACGAGTTGAAGGAGAAGGCCGCGAAAACGGATG 664060 31 96.8 35 ...................A........... TTCCGCTGTGGAAATTCGTTGACCTGTTGCGGCGT 664126 31 100.0 34 ............................... ACAGCCAACAGCCGCTTGCATTGGGCAGCTAAAA 664191 31 100.0 33 ............................... GATTCCTTACCGAGAATTCCGTCGACCCAGTCG 664255 31 100.0 34 ............................... AACTCGGCGGAATCGGTTTCGGATATCAGAAATC 664320 31 100.0 35 ............................... AATGAGAGTCTAATTAGAACCCACGAGGATGTAAG 664386 31 100.0 33 ............................... CTATCTGCATGCGCTGCATGACCTGATCATGCG 664450 31 100.0 35 ............................... GAAAGGGAAACACGCATGAGCGCAACACCGTTAAG 664516 31 100.0 36 ............................... CTGACGCCCGACGAGGCTGACGCGATGGCCGACAGG 664583 31 100.0 34 ............................... TCGACAAACGGCAGCGACAATTGGGTACCGTGCT 664648 31 100.0 32 ............................... CACATCACGCCCGGTCAGCACGCACGGATACG 664711 31 100.0 33 ............................... CATTCATCCACCAGCCACGGAACCGCAGCGCTC 664775 31 100.0 34 ............................... TTTAATATCACCAGATAGCCATTCATCAACGGTT 664840 31 100.0 33 ............................... CCGACGGTGAGCTTGCCGATGGCGCTCCTGCTG 664904 31 100.0 34 ............................... ACCCCGCGTGCGTCGCTCAGCTCGTACCAGATTC 664969 31 100.0 34 ............................... AATGACGCGCTGCTTGCTGGAGGCAAGAGCACGG 665034 31 100.0 33 ............................... ATTACTGGGCTTAAGGCAGCGCTCGGATCGTTG 665098 31 100.0 34 ............................... TAAACTGACCGTGGCCCGCAGCGATCTGGACGAG 665163 31 100.0 34 ............................... CCCCTGTCAGGCTCCTACGCATCGGCTCCGGCAG 665228 31 100.0 36 ............................... AGCATCGATATGGGCGGTGGATCCTCATGAGGGGAG 665295 31 100.0 34 ............................... AATCACGTAACTTCCAGTCAATGAGCGCAGTGCC 665360 31 100.0 34 ............................... AATGCCGATTGGTCGATTGCGTCGAGCGTAAAAT 665425 31 100.0 34 ............................... CTGTAGCGCTGAAGCTCGTGGCGAACGTGGATGG 665490 31 100.0 34 ............................... AAGAAGCGACTGAGGAAGGTCAGTCCGATAGGCG 665555 31 100.0 35 ............................... ATCGTCTGTCTCCTCGGCTGATTGCGGTCAGGTTC 665621 31 100.0 32 ............................... ACATACCCAAATCATTAGGAGGTTTTCGTGTG 665684 31 100.0 33 ............................... GATGTTCACAGCCATCAGCCGCCGCCCAACGCC 665748 31 100.0 35 ............................... GATCACCGATTCTGGTGTATGCACCTGCTCTAAGG 665814 31 100.0 35 ............................... TTGCCGTCGGCCAGGCCCAGCCATATGCCGCTGTT 665880 31 100.0 33 ............................... ATCTCCAGACACTGGAAGTGCTGGTCGGGCGGG 665944 31 100.0 34 ............................... TCAGAGGAAGCTTGTTCAGCTCTCTTGGATGCAC 666009 31 96.8 34 .....................A......... CGATCCGAGCCGCTTTCAATGCTGTTGCCACGAG 666074 31 100.0 35 ............................... ACTCTGACTGTCAGCAGAATGCCGCTGAATAGTAG 666140 31 100.0 34 ............................... ACCGAATACAGCAAGCTGTACAAGGACGTCAACG 666205 31 100.0 34 ............................... GCTCTGACCTTTCCAGTTCCACACGCACGCTCGC 666270 31 100.0 34 ............................... ACTACCAGTCTCGACAACGCCAGCGTGATGTCGG 666335 31 100.0 33 ............................... TGATTGCCCGCGAGGCCCATATGTTTGGCCCAT 666399 31 100.0 34 ............................... CTGGACACGGTGAACAACGCGCAGCTGGCCGCCG 666464 31 100.0 34 ............................... CAGTTGCGGGCCACCTTGTTGCCGTCGGCCGGAG 666529 31 100.0 32 ............................... TCAATGAGTCGGAGTCTACCACTGCTGAGCAG 666592 31 100.0 33 ............................... CTGTCTCTCCACATGTATGTCCATACAGCGGCA 666656 31 100.0 34 ............................... CTGCACGTAGGGGTGTTTTCTTCCGAGGACACTC 666721 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 86 31 99.9 34 GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Left flank : CCGCGCTCGGCATCATCGCCATCAGCCAGGGCATGAACGTGCGCTTCCACCAGACCGCCGAGCTCGTGCTCCAGCTAGGCAAGGCCAAACGCGACGGCGCCCTCGACGCGCTGCTCAGAGACCTCGCGCGCGCCGACCTGATCATCCTCGACGAGTTCGGCTACGTGCCCTTCGACATCGACGGCGCCAGACTCCTCTACCAGATCATCACCGGCAGCTACGAGAGAAGAAGCATCATCTTCACCACCAACATCGAGTTCAGCAAATGGGGCACGATCTTCGCCGACGACAAACTCGCCGCCGCGATCATCGACCGCATCGTCCACCACGGCCGCCTCATCGAATTCACCGGACCAAGCCGGCGCGTGAGCGAAGCCCTCATGTTCGGCAAGGAAATCCACAACCAATAACCAACAGCACGCTCCACGCCGAAACCCGAAAAAAATAAGTGACCAACCACAAAAAACCAACTTGACTAAAAACACTCATAGCGCATGCTG # Right flank : TATCTTCTTCCGCGTATTTATGATTCCAATAATTAGGCGCTCCTTCATAGGAATGGAAATCTCGAACAGACCTCGAACCCGAGAAGACGCCCATAGCGGACAATCCTGTTAATCGACAGGCAGTGGTTATGTTCTCGTCATCGAGGACGTGTCTTTGCCCGGAAATCCGATGCTGATGACGGAGATTCTGACGCTGGTGAGCAACTGCTACAAGTTGCACATGAGTCTGGGCAACTGGCTGCGAAATATCTGCAACTAGGCCTTCTTCGAGAAGTTTTATATACAGGACGACAACTGCATCGAAGGACAGTTCAGCAAGCTGTTCAATGTTTTCTTCGACCCCGAAGTGCAAAAAGCCCACCCCTCCTGCCACAAAGCGAAGAATGAGTCGGGAACCAACTCAATTCGCTGCAAGTTTGAACAGCGAACAAATGGTGCCCGAGAACGGATTCGAACCGTCGACACCCGCTTTAGGAGAGCGGTGCTCTATCCACTGAGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //