Array 1 1087-1513 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHNQ01000266.1 Bacillus thuringiensis strain G03 contig-100_265, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1087 32 84.4 35 ....T....CT.G.....A............. CATTGGCGGTAGTTCATAAGTAACAACAAATGGAT 1154 31 93.8 34 ...........-G................... ATGATATTCAAAGAGCCTGAACAAGTGGAATCGA C [1163] 1220 32 100.0 35 ................................ ATAATTGAATATGAGCTGCCGCCGATGGAAGGGAC 1287 32 93.8 33 ...................T..A......... ATGGAAATGGAACGTTCTTACGGATCAAAAGAA 1352 32 96.9 33 ..............G................. ATGTAGCTGGTATTAATGCTTTGTGAAAAACAA 1417 32 96.9 33 ....................A........... TAAATTACTTGCTGCCTTATCTAGATTACTTTC 1482 32 68.8 0 ......T..CT.G......TA....G.A.G.C | ========== ====== ====== ====== ================================ =================================== ================== 7 32 90.7 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATCCGATTGACATTACTAGTATGCAGATTACGAAAAGTGTAATGTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATGGTGTTGATCTTGGAGCTTATATATTTTATGGAAGTATTCATATGCAATGAGCAAGGAAGACAGATTTTACCAAAGGTGATGCGGAAAAGATTAAAAATGAACTGGTTACATTGTTTGGAAATGATGGGTCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGAAACATAATTCAAAACTTGGCCAGTACTCTTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATATTTTAAAAGTGGCTATTATTGATGGACTGTAATGAAGAAAACGTTAGAATAATTGAAGGAAAGCGTATTTATTAAAAAGTTAATCAACCATTTATTAAAGAAAA # Right flank : TGATAAGATAATTGATAGTAATTTAGTGTTTTTGTTGGAGTAAGGGGACCTACTTCAATTCATACGGCAACTAGTGTTGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGATCTTGGTAAGGATAAAGGTGCTGATACGATGAGTATGAAGTATCGTGCTGATTTTGGAGTATATGTCTTTTATGGAAGTATTAATACATAGTTAGCAAAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGCATCAGCAGCACGCCCTGAAGGAAGTA # Questionable array : NO Score: 6.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.54, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6696-6009 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHNQ01000097.1 Bacillus thuringiensis strain G03 contig-100_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6695 32 100.0 34 ................................ TATTGTTACACCTTTAGAGTATCCGAGTAAAAAA 6629 32 100.0 34 ................................ TGGGTGGCAATGTTTGCGTTATTAGTTCCGAGTG 6563 32 100.0 35 ................................ ACAATGGGAAAGTGTTAGGTTATGCACGTTTTAAA 6496 32 96.9 32 .......................A........ GAAGATAGTAGAAGAAATCAAAAAAAGTGTAT 6432 32 90.6 33 .........T.........T...A........ TTTGTTGCTCCAGTCGTTATGATCGTCTTTGCA 6367 32 93.8 33 .......T.T...................... TAGGAGTTATTAATGGCTTTAGATGTTAGACCA 6302 32 90.6 34 .........T.........T.A.......... TACCTCGGGTTTATATTTATCTGGAATGCCCATA 6236 32 93.8 33 ........CT...................... TTTGCAACTAGCTCAATTGTTTTTCCGTTTTCA 6171 32 96.9 34 ....................A........... TACCTCGGGTTTATATTTATCTGGAACGCTCATA 6105 32 90.6 33 .........T.A.......T............ ATAATATCACAATTTTGACAAAATTCAGTCATG 6040 32 90.6 0 A.T.................T........... | ========== ====== ====== ====== ================================ =================================== ================== 11 32 94.9 34 GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Left flank : ATTGAAAATGGAGAAACAGAGAATTTATATCCAGGGATTAATAAACAAGGAATAAGAACATTTTACACGAAACATTCTACAGATGTTGAGAATGAGGTTGCTACTGCGATTCATGTGTACGTTGATGTATTAAAACAAATGAAGCGTGAAGGTGCTGAATTAGCAAGGAAGAAGTAGAACGATGTGATTAGAAGATTTAATAAATAAAATTCTTCATCATATTATAAAACTATACATTCTTGTTTATTAGTTAGCTAATAGCTATGAAAATAAAATTAAATATATCGGTGTACAAGAATGAATTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTCATAATGTATGATGGGGATTTATGATTTTTATACAAAATACTTTAATAAATAAAAATATTTTTATATTTTTGAATAGAATTAACGTATTTGTGATTGATTTTGAGCACAAATCGGT # Right flank : AGTTTAGTAGATACTCAACTAGAAGTATCTATATCTGCAGTATCTAATACAAAAGTAAACAGTATAAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAAGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCCGGTATGCTCCATGATATGGGGAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCTATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTGCGAGATAAGCAATTA # Questionable array : NO Score: 8.46 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //