Array 1 280548-281476 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAIGPP010000002.1 Pseudomonas cichorii strain LCYJ11 Scaffold2, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
    280548	    28	 100.0	    32	............................	AATAGCTTGCCAGTCGGCAAGCTGTACAGCGA 	
    280608	    28	 100.0	    32	............................	CGACAGCGCTTCGGCTTTCCGCCCCAGCCATC 	
    280668	    28	 100.0	    32	............................	TTGGCGTCTTTGGTATAGCGGGTATCGGTCTT 	
    280728	    28	 100.0	    32	............................	GATGGTCACGCTGTCTTCTACAGACTGCCGCA 	
    280788	    28	 100.0	    32	............................	ACAGCGAATGGACGTTTGCACATCACACCTGC 	
    280848	    28	 100.0	    32	............................	TTTACCCACCAAAGAGAACACCCACCATGGGC 	
    280908	    28	 100.0	    32	............................	CAGTGACCGGGCGACGACTGCAAAAGCCAATT 	
    280968	    28	 100.0	    32	............................	CTCCAGGACACAAGCGGCAGACCGGTAATCAC 	
    281028	    28	 100.0	    32	............................	GGCGCTTCCAGGCTTACCGCTGATGTCTTTAC 	
    281088	    28	 100.0	    32	............................	ACCGCCAGAACTGGCGGGCTCGGCAGGTGATT 	
    281148	    28	  96.4	    33	.................T..........	CGTTGAACGAGGCAGTCATAAACCAGGTGATGC	
    281209	    28	  96.4	    32	.................T..........	GACCCCACGTACACATTTTTTCCCGTTTCAGG 	
    281269	    28	  96.4	    32	.................T..........	TGACAGCGAGCAGCGAGCTCTTCGGGATCAGC 	
    281329	    28	 100.0	    32	............................	TAACGTGTTGGCTTCTGTCACCGAGGCGTCGA 	
    281389	    28	  96.4	    32	......................C.....	CATGTATTCATGTCGTAGAACTCGGCGGGCAG 	
    281449	    28	  96.4	     0	............A...............	|                                	
==========	======	======	======	============================	=================================	==================
        16	    28	  98.9	    32	CTTCACTGCCGTGTAGGCAGCTTAGAAA	                                 	       

# Left flank :   CTGCAAAAAACCTTGTTGACCAATGATATGCGCATCCCTATACTTCGCCGCCATTGAGCCCTGATGGCGGAATTGGTAGACGCGGCGGATTCAAAATCCGTTTTCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCAAACAGCAAGACACCCAAGCGGTTGCAGAGCTTGGGTTTAAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCTGGGTTTTGGTGATTGCAGGGGCTGTAGGAGCGAATTCATTCGCGAATCAGCATTCCAGGCAATACATGTCCTTTTAATGTACCGGCCTATCGCGACTGAAGTCGCTCCTACAAGTCCGGCGCCAAACCACGACTTAACGCACCCTCTTTTTGACCCTCTTTTTTCAGACTCCGTCGCCCCCTTTAAAATCAATAACTTACGAGAGCCACAAAAAAGAGGGTAAAACAGCTTCAGGCAGGTGGTTTCTCTTTAAAAACGGAGAGTTATTAGGCAAGGTGTCTA
# Right flank :  AATCCTCGAAGTGCAGGAAGAGTGCGTTGTTGGATTCACTGCCGCACAGGCGGCCCAACCCTCATGCCAGTCAAATCCTACACCACACTTACACACGCCCCACAACCACCTACTCCCCATCCCCTCACCCAAACTGAATCCCCTCATTTTACCAACCCAGCCCCCAAGCTACCCTTCCCGTCATTCGCTGCCCCAGCAGCGACCGGGTTTGGCGACCCGATCTAAAGATAAATTCCCCCATCGCGAAGCAGTCGATTTATTCTTCTGCGCACTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGACTCCCCGTGTACATCCTCCTTCCAAGCCACCCTCTTCCTGCGACACAGCCGCATGCTCCGCGC

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACTGCCGTGTAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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