Array 1 62-4131 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAYC01000029.1 Brachyspira aalborgi strain PC4226IV PC4226IV_contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 62 31 100.0 37 ............................... ATGTCACAGTCATATATTGAGTAAATATTATATTTCA 130 31 100.0 36 ............................... AGCAATGAAGCGTTGCAATATCCAATACCATTTGGA 197 31 100.0 36 ............................... GCGTTTTACGAACTCGTTTAATATTCGTTTGTTGTT 264 31 100.0 37 ............................... AATTGAGATTGTAAAAACTCTATATATCGACTACCAG 332 31 100.0 36 ............................... GCAATGATTGATGTAATCATTGTTATTATTTCTGAT 399 31 100.0 36 ............................... TGTAGCGTTGTTACCATATTGCCTGATGACCAATTG 466 31 100.0 36 ............................... ACAATGTTAGGAGTAACGGAGGGACTTAAATGACAA 533 31 100.0 36 ............................... CCTGTTGCGTCTGCTGCTAAAGGATTTAATCCGCTT 600 31 100.0 36 ............................... GCTATAGCATTTATCAAATGCATACTTTCAATCGCT 667 31 100.0 36 ............................... TAGATCGTCTCTGGTTTTATATACATTAGCTTCATA 734 31 100.0 37 ............................... GCTTACTAACTGGTCGCCATGAATCGCATTTATTATT 802 31 100.0 36 ............................... TGTCTATCTTATAATCGTTATATTCTCTTAATGTTT 869 31 100.0 36 ............................... AAATATGTAAAAATAAAAGATGAAGAGATAGCAAAA 936 31 100.0 36 ............................... GTTATATAAATTGTCTTTTGTTTTTACTGCATTAGC 1003 31 100.0 36 ............................... TTTTGTATATTTAAATTGTTTGTTCCAATTCTCTTG 1070 31 100.0 36 ............................... ATGTTTTCTGTCAGATATGGATTGAAACCTGCTTTT 1137 31 100.0 36 ............................... TCTTTTATGCTAAAGAATCTCGCTTCTGTCCAGTTA 1204 31 100.0 36 ............................... CTTCTTCTTGTTCTTCTTGTTGTTCTTTATAATTAA 1271 31 100.0 36 ............................... AAATCCAGTGTCAGGCATAGGAATAATAAATGAAAT 1338 31 100.0 36 ............................... GATGTAGTTATACGCGTCTTTCCAGAACGACATTGG 1405 31 100.0 36 ............................... AGCTGTCTTTGTATTTATTGTAAAGTTCATCTCTGT 1472 31 100.0 37 ............................... ATAACAGATCCAACATTTTTTAAAATAGCAAGCACAG 1540 31 100.0 36 ............................... GTGGTAGCGGACGCAATGCTTTAAAATCACAATAGA 1607 31 100.0 37 ............................... AATATTTTATCTAATAAACTCCAGAGATTTCCCGCCT 1675 31 100.0 36 ............................... GTTGTGAACCTAGGCTCTGTTTTGGTAGTGAAGTTG 1742 31 100.0 37 ............................... AGATGTAATTATATGCGTCTTTCCAGAAGCTCATTGG 1810 31 100.0 37 ............................... TTTCCATGATATTTCCATTTTGCCATTTTTTTTCCTT 1878 31 100.0 37 ............................... CTTTCTCTTAAATCTGCCATTTTTCTTTGCACTGCTG 1946 31 100.0 37 ............................... TCTGGATATATTTGTGTGTCTAGATTTTTTTTAATTA 2014 31 100.0 36 ............................... GTTGTTATATTTTGCGTATATTTTTCTTTTCATTTT 2081 31 100.0 36 ............................... ACAGTCTACAATGTTTTTGTGCCATATTAGAAATTG 2148 31 100.0 36 ............................... TGGACAAAACGAGGATGCCAACAATGCTAGGCGTAA 2215 31 100.0 36 ............................... CTTTTTCTTCTTGTTCTTCTTGTTGTTCTTTATAAT 2282 31 100.0 36 ............................... TACATATCTCCAACTCCGTTTTTATCATTTGCATTA 2349 31 100.0 36 ............................... TAAGTTTTTTATTTTGTGATGTATAAATGCATTTGT 2416 31 100.0 36 ............................... GCTTTTTACGAGTGATCTCTTCGTAAATGCTCGCGT 2483 31 100.0 36 ............................... GACACATCTAAATTATAATTACTTGTTGAATTACAG 2550 31 100.0 37 ............................... TTTTTTTAGCGCTATATTGACTCGTATAATTTATAGA 2618 31 100.0 37 ............................... GGCATTAGTATTGTCGAGTATACTGGATATATCAATC 2686 31 100.0 36 ............................... GATAAGAATCGGTAAAAGTCTGGATCTAAGTTTCTA 2753 31 100.0 37 ............................... TTTGTATCATTTGCATTAGGTGCTGTTTGAAATACTG 2821 31 100.0 37 ............................... TTCGGTTTACCATCACCCGTTATGAGAGATACTATTA 2889 31 100.0 37 ............................... TTATGCTGTATTTTATTTCATTTTTAAAGTATTTTGG 2957 31 100.0 36 ............................... TTTGCAATACGCCTAGACATATAAGAGAATAATCTT 3024 31 100.0 37 ............................... TTTCGTATATGAGATTCGTTTCGTGTGATCTTTGAAT 3092 31 100.0 36 ............................... GAGATAGGAATTGCCTGTTGTGAACCTAAACTTTGT 3159 31 100.0 36 ............................... GTTATTTGACCTCTCACATAATCTCTTTGTATTTTT 3226 31 100.0 37 ............................... AAGACTGTATTTGTAATGAAGTTTGGAATTGCTAATA 3294 31 100.0 36 ............................... ACCTCAGTCGGTTTTCCTTCCATATTTAATACTCCT 3361 31 100.0 36 ............................... CCCCTCGCCATCATTTCGCTAAACATTTGTAACGCA 3428 31 100.0 36 ............................... ACTCCTAGACCGTGCCCATATAAGTCTCCAACTCCG 3495 31 100.0 36 ............................... ACATATTTTTTATGTTGTCTAACGATTTTATCGCCC 3562 31 100.0 36 ............................... CGACTCATTAAATGAAACTCTTTTTGTCTTCCGTCT 3629 31 100.0 37 ............................... AGTAGTATGGTCTTCCTAGCGTTTCATCGCTTGGTGC 3697 31 100.0 36 ............................... GCTTGTAGCGATGGTGTTCCTTGCTCTGCACTTCCT 3764 31 100.0 37 ............................... AATATTGTAATTTTTTAATATACAATGTAAACATTTC 3832 31 100.0 36 ............................... GCTGTCTACGATGTTATTGTGCCAGACCATAAACTG 3899 31 100.0 37 ............................... TTTTGTATATTCGAATTGTTTATTCCAATTTTCTTGA 3967 31 100.0 37 ............................... GTATTAATTCGTTGTATTTTTTTGCTATTTCTGATTG 4035 31 100.0 35 ............................... TATATAATTATATGCGTCTTTCCAGAAGCTCATCG 4101 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 61 31 100.0 36 ATAATAAATCTAACCATATTGGAATGTAAAT # Left flank : ATCTAACCATATTGGAATGTAAATGGCCTTGTTTTGCTAATATCTGACGGATTCCACTTCGA # Right flank : CTTTTTCTTTTTGCTCTAATGCTTCGTATTCTCTTCATAATAAATCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 48-616 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAYC01000033.1 Brachyspira aalborgi strain PC4226IV PC4226IV_contig33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 48 31 100.0 36 ............................... CTGCCGTGAATATATGTTCTTGAGTTAGGTCAAAAT 115 31 100.0 36 ............................... GACAATGAACAAGGGCAAAAAAACGCAAATCAAATA 182 31 100.0 36 ............................... CTATATTTTTATCTTTTAGTATTATTTTATTATAAC 249 31 100.0 36 ............................... TCGCTACAGGCAGCAAAACAAGAAGCATATATAAGA 316 31 100.0 37 ............................... CATTACGATTAATATTGCTTTGCTTTTCTTCAATATT 384 31 100.0 36 ............................... TGCAGTCCCACAATTCGCCTATTTCTACTACATCGT 451 31 100.0 36 ............................... GACTTTTACAGATTCCTGTCAGGATTCGCAGAATAC 518 31 100.0 37 ............................... GGCCTTGTTTTGCTAATATCTGACGGATTCCACTTCG 586 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 9 31 100.0 36 ATAATAAATCTAACCATATTGGAATGTAAAT # Left flank : GGAATGTAAATACTGTCTACAATGTTGTTGTGCCAGATCATAAATTGA # Right flank : ATGTCACAGTCATATATTGAGTAAATATTATATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1491-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAYC01000004.1 Brachyspira aalborgi strain PC4226IV PC4226IV_contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 1490 31 100.0 36 ............................... CAGCGTTTGTTGTAAAACTCGTCAATGTTCCCGCTT 1423 31 100.0 36 ............................... TTCCATGAGCCTGGTTCTTGTAGTTGATTTAATATA 1356 31 100.0 36 ............................... TCTAGCGTTGTTGCTACATTTCCAGATGTGTAATCG 1289 31 100.0 36 ............................... GATGCCGCTGCTGGTTGTCCTACTGCTAATAGTTTG 1222 31 100.0 36 ............................... TGATTTCTTCTTCATTTTTTTGCATATAATAATCAA 1155 31 100.0 37 ............................... TATTATCTACTCCTACTGGTCTTCCGCTTTCTATTGA 1087 31 100.0 36 ............................... ACTTTCAATATGAAAATCGGCTAATTTTAACAATAA 1020 31 100.0 36 ............................... CTCACTTTTGCTCTTTTTTCTGTATACCAGCTGAAG 953 31 100.0 36 ............................... TATGCTTTTTGTATTTCTTCAGCTGCTTTATCGAAG 886 31 100.0 37 ............................... TATCTTTTCCTTTTAATTCAATTCAGCGAAGGCGTGC 818 31 100.0 36 ............................... AACCATAAATTGACTTCTTTCAATTGTATTATCTGT 751 31 100.0 36 ............................... TACGCTTGCCTGAAATAGTCTATTTGCTGAAACTTC 684 31 100.0 36 ............................... CTTACTTTCGCTCTTTTTTCTGTATACCAACTGAAA 617 31 100.0 36 ............................... GGCTATTTCTGAAGTATATTCTTCGTAGCCTGACAA 550 31 100.0 36 ............................... TTTCCATACATATCTCCAACTCCGTTCGCATCGTTT 483 31 100.0 36 ............................... TGTTGTTTCACTTGTTTTGTGTCAGGTGTTGTTCCA 416 31 100.0 36 ............................... CTTCGGTAGCGGCTGGTTCCATACGACTTCTGAAGT 349 31 100.0 37 ............................... TTCTTCTTTCACTTTAGATATAAACTCGTCCCACTTA 281 31 100.0 36 ............................... CAAGGCACTTCTATATTTTTTTCTTTCAATATAATT 214 31 100.0 36 ............................... GTTTTCTTGTTGTTGTTTGTTCCATTTTTTTTGTAA 147 31 100.0 36 ............................... ACTGTCTACAATGTTGTTGTGCCAGATCATAAATTG 80 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 22 31 100.0 36 ATAATAAATCTAACCATATTGGAATGTAAAT # Left flank : ATTTGCTCGGAGAAAAAGAATATTCCCCGTTTAAAATATGGTGGTAGAAATGTATATAATTTTAATATATGATATTCAAGTAAACGATGAAGATAATCCTTATGTATTGAAAAAAGTTTTTAATATTTGCAAAAGGTATCTTAATCATATACAAAAATCGGTATTTGAAGGCGAACTTTCAGAACCTAAATACCTTAAATTAAAAGAAGAGCTCTTTGACATATTAAGAGAACATAAAGACTCATGTATAATATTTAAAAGCAGAAACGAAAAGTGGCTTGAAAAAGAGTTTTTAGTAAAAGAAGATATTGACAAAACTTCAAATTTTATATAAAATACAAGTATGTCGATGTATAATCTATAATAATTTGCGGATTATCGACAGACGATTTTTTAAATTAATGTCGTATTTTGTATTGTTATATTATTTTATATCAATACTTGTATCAAATTAATATGTAGAAAATATTAGTTTTGCATATTTCAGAGAGAAAAAACGG # Right flank : TCTGCCGTGAATATATGTTCTTGAGTTAGGTCAAAATATAATAAATCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 60-2039 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAYC01000018.1 Brachyspira aalborgi strain PC4226IV PC4226IV_contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 60 31 100.0 36 ............................... CCTTTATATTAAAATAAGTATCGTCTATAGTTATCT 127 31 100.0 36 ............................... GCTCTTACGAACTCGTTATAGCTTTCTTGAATACTA 194 31 100.0 36 ............................... TACCGTGCCCATACATGTCTCCTACTCCGTCCCTTT 261 31 100.0 36 ............................... TATTGTCTATTCCAACTGGTCTTCCACTCTCTACTG 328 31 100.0 36 ............................... TTTCGTTTGTGTTATTTGCTGTTTGTAATACTTCCG 395 31 100.0 36 ............................... TAGTTTTCACCTCCCCATTTTTTATTTCCTCCTTGA 462 31 100.0 35 ............................... GCGCAATTAACGACTATAAAGAATTAGAAAAACAA 528 31 100.0 37 ............................... AGCATGTCCCATAATGTGCCAGGCATAGTTTTTGATA 596 31 100.0 36 ............................... TTCGTCAAATGGAGCGTAGGATTAGGTAAAGATTGG 663 31 100.0 37 ............................... TTTGTATCGTTTGTGTTAGGTGCTGTTTGAAATACTG 731 31 100.0 35 ............................... TCTCCTGCTGCCATTAGTCTGTTCATTCCTGCTGC 797 31 100.0 37 ............................... GACAGAAATCTATATATATTTTTATCTAGATTTCTAA 865 31 100.0 37 ............................... CTTAAATAGTATAAATAGTTTAATAGTTTTTGATTGG 933 31 100.0 37 ............................... ATTCTGGCGTTTTTGGATACATTCTTTTTAGCGCTTC 1001 31 100.0 36 ............................... CCGAGTCCGTTGTTCTTTTATTTTGTTCTTTGCTTC 1068 31 100.0 36 ............................... TGATTTTATTATTCTTCTTCTTGATTTGCATTCGTT 1135 31 100.0 36 ............................... GCATGTTTTTATTTTGTGATGTATAAATGCGTTTGT 1202 31 100.0 36 ............................... TAGCTAGCATATTAGTTAGGTCTTTTAATAATACCG 1269 31 100.0 36 ............................... TAAGTTTAATCTATTGTAATATTCGTAGTGATTTAC 1336 31 100.0 37 ............................... CCTAACGATGAAGAGAAAAAATACGCGTGGTATTTTG 1404 31 100.0 36 ............................... GCATTAATAATTCACTGTAGATTGGATATATGAATC 1471 31 100.0 36 ............................... GCGAAGTATTACAAACTTCAGAAACAACGACAACAG 1538 31 100.0 36 ............................... AAATTAAATGCTTTTGATTTAGGTCATAATCATTTT 1605 31 100.0 37 ............................... CAAAGATCAATGGACATGTTAAGTAATTTAGAAATCC 1673 31 100.0 36 ............................... GTCTAGAAGCTTACGACCTGTTTTATGAGTGGTCCT 1740 31 100.0 35 ............................... TTGAAACTTTCTATAAAATAAGTATCTGGTTTTAT 1806 31 100.0 37 ............................... CCGCCTTTAATAAATTGTGTATTTTTTCTCTTGTTTC 1874 31 100.0 36 ............................... TCTGTGTCCGCTTGATTTCTTATTAATGCAGTTTGT 1941 31 100.0 37 ............................... TGAGTCTACTATATTGTTGTGCCATACCATAAACTGA 2009 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 30 31 100.0 36 ATAATAAATCTAACCATATTGGAATGTAAAT # Left flank : ATCTAACCATATTGGAATGTAAATTGTCTATGAACTTCTCTTGCGTAGTCTACTCCGTCA # Right flank : TAGTTTCATGTATAAATCTTATAGCTAATTCTTTTTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTTATAATAAATCTAACCATATTGGAATGTAAATATGTCTCCTAATATTGAATTATCTGTAGTTTGACTTGATAATAAATCTAACCATATTGGAATGTAAATACACTTAATCCCTCTTTTTTTTATATATACAAGAGAGATAATAAATCTAACCATATTGGAATGTAAATGCCATCATTAAACGCTCTAAAAACTTTTGAATCTGAATAATAAATCTAACCATATTGGAATGTAAATGGTATTAATATTGTTGAGTATATCGGGTATATTAGTATAATAAATCTAACCATATTGGAATGTAAATAGATATAGGGACTAAATCGCCCATATTCATTGTAGTAATAATAAATCTAACCATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 2182-3490 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAYC01000018.1 Brachyspira aalborgi strain PC4226IV PC4226IV_contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 2182 31 100.0 37 ............................... ATGTCTCCTAATATTGAATTATCTGTAGTTTGACTTG 2250 31 100.0 37 ............................... ACACTTAATCCCTCTTTTTTTTATATATACAAGAGAG 2318 31 100.0 36 ............................... GCCATCATTAAACGCTCTAAAAACTTTTGAATCTGA 2385 31 100.0 36 ............................... GGTATTAATATTGTTGAGTATATCGGGTATATTAGT 2452 31 100.0 37 ............................... AGATATAGGGACTAAATCGCCCATATTCATTGTAGTA 2520 31 100.0 36 ............................... TTTCCTTTGGACCATATATTTACTCCGAACTTATCT 2587 31 100.0 36 ............................... GATATATAAGAAAGTTCTTCTCTTAACTCGTCATAT 2654 31 100.0 36 ............................... TCAAAATTTCTGGGCGGTATAGAACTTTGGTCTATA 2721 31 100.0 37 ............................... TTCATATACTGGATTATAACCTAATATTAAATTGTTA 2789 31 100.0 36 ............................... CTTACATCTAAATTGTAATTACTCGTTGAATTACAA 2856 31 100.0 36 ............................... AACATTGTTGGTAGTCTTTTCTTGCTCATACTTCTC 2923 31 100.0 37 ............................... TATAGTAAACTGCTCTCACATCTCTTACTGCTTGCAA 2991 31 100.0 36 ............................... ACGACCTGTTTTTATGAGTGGTCCTTTCGTAAACGC 3058 31 100.0 36 ............................... CCAACAAACATGCAAATAACAAGACCAGGCACACTG 3125 31 100.0 36 ............................... TTCTCTGCACGACTGTCGCGCGCTCTTCTTTCGTAG 3192 31 100.0 36 ............................... TAATTCTATCGCATGCATAATCGCGCGTTACTAAAT 3259 31 100.0 36 ............................... AAAAAAAGTTCAACCTCGTTATCGCCTCCGACTTTA 3326 31 100.0 36 ............................... TAATTCTATCGCATGCATAATCGCGCGTTACTAAAT 3393 31 100.0 36 ............................... CTATCTTTTGAAGTTTCTTTTTACAATCTTTCAAAT 3460 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 20 31 100.0 36 ATAATAAATCTAACCATATTGGAATGTAAAT # Left flank : CTAACCATATTGGAATGTAAATGTCTAGAAGCTTACGACCTGTTTTATGAGTGGTCCTATAATAAATCTAACCATATTGGAATGTAAATTTGAAACTTTCTATAAAATAAGTATCTGGTTTTATATAATAAATCTAACCATATTGGAATGTAAATCCGCCTTTAATAAATTGTGTATTTTTTCTCTTGTTTCATAATAAATCTAACCATATTGGAATGTAAATTCTGTGTCCGCTTGATTTCTTATTAATGCAGTTTGTATAATAAATCTAACCATATTGGAATGTAAATTGAGTCTACTATATTGTTGTGCCATACCATAAACTGAATAATAAATCTAACCATATTGGAATGTAAATAGTTTCATGTATAAATCTTATAGCTAATTCTTTTTTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTTTT # Right flank : TTTATCTTTTTGACCATTTTCAAATTATTTATAAAATATTTTCATTTGTAAAAATAATATTTTTTTAAAACTGCATGATAAAAATAACCTATTGCCACAGATATTATGATCAATAATTTAAATCCAATCTAAAATTGAGAGGATATAAAAATTTAAAGCCATTATCCCCCCCCCTATAAAGTTATCAAAGAATTTATTTCTGAAATTCTCTCGCCCTTTTTAACGGGAATAAACCAAGCCAAATTATCAACTTTTTCTTTATTCATTTTAATTGAAATTCTAATTCCAAATAAAGTTAATCTCAAATACTCGTTATTATTCGATATTCCAAAAAGCGTCCACCAATTACAATTTAATCTCAATTTTTGATAATCATTATTTGAAATCGTTTCTTTATTTTTAAGCGATAATTCTCTTTCTAATCTTTTATACTCGAAAGAAACAGGCTCAAGAATGCAAGATTGTTTTATAAATGTTTCTCTATCTGAAAAATTATATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAATAAATCTAACCATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //