Array 1 204317-202947 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZQP01000009.1 Paraburkholderia sp. UCT31 Contigs_009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 204316 29 82.8 37 .A..TCCG..................... GTAAAGCTCGGGCGCCACGGCGTCTTTGACCCTCCGG 204250 29 82.8 32 GCC..............T........A.. GACTACTTGACGAGGTGCGCGCACGTGTTCCC 204189 29 100.0 32 ............................. CCGAAACCCGAAGGCCCGCTTTTGGCGGCTTA 204128 29 96.6 32 ..G.......................... TGAAAAGACCTCATCCCCTGCGGCTTCGTTAT 204067 29 100.0 32 ............................. TCGAGCTGGGCACGGTGCGCGGCCAGCGTCTG 204006 29 100.0 32 ............................. GGATTTCCGATTCACTGAATTCATCTATTGCC 203945 29 100.0 32 ............................. CTGACGCCGGGCATGTGGTGGTTTATGGACTA 203884 29 100.0 32 ............................. GCGCGGGTCATCCTGAATATAGGGCTGCACGC 203823 29 100.0 32 ............................. AATATCTCGCCGACTATTCGCGGGATTGCGGA 203762 29 100.0 32 ............................. TTCCGCGACGCCCACGGCGCGGGACCGCATTG 203701 29 100.0 32 ............................. TTCTTCAATCGGCGCGTCGCCGTTATCAAGCC 203640 29 100.0 32 ............................. CCGTTGCTGGCCTGCGCTTCGTACTCGTAAAA 203579 29 100.0 32 ............................. GGCCGGGTACCCCTTCCCGTACTACGCTGCCA 203518 29 86.2 30 ........................ATAG. TCGTGGCAGCGCCCTCGTCGTGTTCTTTTT 203459 29 96.6 32 ..G.......................... CCGGTATCGCCAGTCCACATGGACTTGAAAAC 203398 29 100.0 26 ............................. CGGCAGCTGACCAAGGTCCCGATGAA 203343 29 86.2 32 G......G.TA.................. AGTAACGTTCGTTCGCGCGCGCACGGCGTCGG GC [203336] 203280 29 100.0 32 ............................. GAAGCGTGAGCCATGTACGAACGACTGGTGTT 203219 29 100.0 32 ............................. TCCCATCTGGATAGTGCCGGCGAGTCGCTCGA 203158 29 100.0 32 ............................. GATGAACGGCCCTGGACCCACGAGGAAGGCAT 203097 29 89.7 32 ...............T.......AT.... ATAGAGTTCGGCCCGGGATATGGCAGCCACAG 203036 29 93.1 32 .....A.....C................. GCCTTCCTTCGCCCCTACCCTCGGCACGGCGT 202975 29 93.1 0 ...........................CT | ========== ====== ====== ====== ============================= ===================================== ================== 23 29 96.0 32 CGAGCTATCCCTGCTCACGCAGGGCGGAC # Left flank : GTAACGGTGGACAAGGCTCAGGAAGGAAAACGCAGCCAGCGCAAAGATTTGGTGATGGAAAAATATCGCGAGTTCGAAGGCCGGGTTCCAGTGCAGCAAGTAGCCCAAATGGCCGCGTCGCAATGGCTATCGGCCCGAAGCGAGAATGCGGGGTTTCGCTTGGTCGACTCCGCCGCAAGCAACTACCACTGCGTCACAATTAGGGAAAAAGAACAACCGTTCAAAGTCCCTGTTCTGGACATGGAAGGAACACTCGAGGTCACCAATCCCGAGTCGTTCCTCGCGAGACACCTTGCAGGCTTTGGCAAGACGCGCTTCGCTGGCATGGGCTTAATGCTTGTTAGGCCTGTCAGGTGACAGATTCCATGCCTCCCCAGTCGGAGGCTATTTCTGCTTAAGGCAACAGGCGCCGGCCGACTCGAGGCCTGTGCGGTGTCTGGAACTATCCACGCTACGACGCCTACGCCTTCAGCGCTTCGTTCGAGCAATACCTGCTCATG # Right flank : ACTCTAAGGAAAAGCCTCTCTCCCGACTATAGCGCGCAGTGAACACCTTTCCCCGCGCGTCGCGTACTTGAGCACGCCAAGTGCCTTGCGCAACCTCGGACATTCGGAGGTACACGCGACCGTCATTCTGGACAGGCTCCCCAATCAACCGCGCTCTCAACGAAATCTGAGACAAGACAGCTCCGTCACGCTTCGACCGAAACAGTGGCTGAGGACTGGCAGCAGTATCGCAGAGAACGACCTGAACAGAAGCCTCTCCCAGTCGCGTCACGCTCCGCTCGGACGTCTCAATGCCGGCCTCTGTACTGTACCCACAGTCAAGACGAAGCATGCTGACGCGGGCGTGCTGCTGTGCCGCCGAGGTCCTACCCTGCGCGCGTTTTTCCGCACCCTCCATAGGGCTCGGCACCGTCGCACGCTCATCGTACGCGTACTCGACCGCCCGCCGCACCTCACTAGGAATTTGCAGTCTCTGCCAATCCTTAACAATCTGGGCAGTT # Questionable array : NO Score: 3.05 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGAGCTATCCCTGCTCACGCAGGGCGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 209393-209849 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZQP01000009.1 Paraburkholderia sp. UCT31 Contigs_009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 209393 29 100.0 33 ............................. GGATGCAGCTGGGTGTGGCTTTGCGTTAGGTAG 209455 29 100.0 32 ............................. CCGATAGTGCCCCCTACTGCCTGCCCAAGTAC 209516 29 100.0 32 ............................. TTCCTCAACAACTGGGTTCGAACAAACAAGCG 209577 29 96.6 32 ............T................ GCCAATCTGCCGGGATTGCGCATGCATGACCT 209638 29 96.6 32 ............T................ GTGAAGACGCAAACACGGTACAGGGGCGAGGG 209699 29 96.6 32 ............C................ GCCGGTCACCCTGACTTTACAAAAGACGGGTT 209760 29 86.2 32 ..G.........T..A............T GACTGAAGCACAATCCTTAAAAAACTGCCGCT 209821 29 89.7 0 ............T....G..T........ | ========== ====== ====== ====== ============================= ================================= ================== 8 29 95.7 32 GTCGACCCTGCGGGAGCAGGGATAGCTCG # Left flank : GAAAAATGTCAATCAAAAGCTCGGTGGCGAGGGCCGAATAGTCAGCTCGAGCGTGCGCGACCCGAAGAAACGGTGAACCCGGCAGGTCGACCGGAGCAATCGTTGTCACTTCCCCCTCGGGTGCTTCGACGGGGAGCCACTTGTCAAAAAGTAGGTTCAAAGACCGGCTCGGGAGTTATTGGTGATTTTTCGCATCCTTTACAACGCAAAGGACGTCGGCGAAAGACTTTACAAAGTATAGGGCATCGGACGTCGGCTTTACAACTGCTAACTGGCTGGGTAGCAAGAAAAGGCTGCGGACCCTCAACCCCAAAATAGATGGCGGCAGGCACAATACGCCCGCCCGGCTGTGCTCCGCGCGATTGCCCCGCGCTGCGCGGTCATAGCGAGTGCGCCAAATCGGCGTTCCCCAGGCGACGGGCGTCATTGCTTCCGGTAGAATTTTCGGTAGAATCAAGGGCGGCTGAAAGCGGCCGTATTTTCAAGGGCTTAGTGAAAGA # Right flank : GCCCCGAGCCGGCCTCGCTACAGGCTGCCTGAGGTCGAGCCTGCTAAGCAGACCTGACCGCGCCCTTCTGTCAGGTCGGCAACGACAGGTAGCGCAGCGATGACACCACCGAGTAGGGTGTATCCTCGGAGCCAAAGACAGACAAGGGCAGCGCGAGTACTCCGTAGCGCTCGAGAAGTTGCTGATGGGGCGCGGGCACGACGCGCAGATAGCGCGGCACGGGAGTCAACGGCGCGAAAGCATAGATGCCGCGTTCAGCCAGAGCGAAGTTCAACTCTTTCTCGCTGCGCTCCAGCGCTGACGCCAATTGCTGTGGAAAGTCGGCGCAACGCTGCATGAAATATTGCGCGAGCTTGAGCTCTTCCTGCTCGGCGGGCAGCGCGCGGAAGGCCGGCGTGAGGCGGTCGACATCGTCGTGCGGAACGAGCGCGACACCGAACACTTCGGGCGCAGCCCAGTTCTTCGCAAGCGAGTGGAGGACGATACATTGGCCGGTCCCG # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCTGCGGGAGCAGGGATAGCTCG # Alternate repeat : GTCGACCCTGCGTGAGCAGGGATAGCTCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.00,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //