Array 1 502-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWG01000017.1 Salmonella enterica subsp. enterica serovar Derby strain Sa79 scaffold17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 501 22 75.9 32 -------...................... TCTAACACTCAAAGGTGGAATGACAGAGCCTT 447 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 386 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 325 29 100.0 30 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAG 266 29 72.4 32 NNNNNNNN..................... GGACAATTTGTGCTTTTGCAATTCACTTTGAA 205 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 144 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 83 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GAGACGATGGCGGAGGCGCAGAAATCTAACCTGGTGTTCCCCGCGCCAGCGGGGA # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 504-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWG01000021.1 Salmonella enterica subsp. enterica serovar Derby strain Sa79 scaffold21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 503 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 442 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 381 29 100.0 25 ............................. TCTTTTTGCATCAGCGACCAGAGCC Deletion [328] 327 29 79.3 32 .CT.GTAN..................... ATGCGCGTAACGGTCATTATGTTAAATAGAAC 266 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 205 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 144 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 83 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCGCCAGCGGGGATAAACCGTCAACGGCCTGCCGGGTAAATCGGTTCACGTG # Right flank : GATTTTAGAATTACGCATTGAGCCGATGATGTAGTGTTCCCCGCCCCAACAAGGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 85152-84512 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWG01000004.1 Salmonella enterica subsp. enterica serovar Derby strain Sa79 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85151 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 85090 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 85029 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 84968 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 84907 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 84846 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 84785 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 84724 29 96.6 32 ......N...................... GTTGGCAGCATGATCGCTAAATCTAAAATGCC C [84719] 84662 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 84601 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 84540 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGAATATATATGATATCGAATAACGAAGCAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCCTGATCCCGGTACTCCAGAGTATTTCCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGATAGCTGTTTTCATAACGTGATCTCCAATGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGTAAAAAACTATACGATCCGCGCTTAGGGGGTGTTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAGGTGTTCCCCGCGCTNAGCGGGGATAAACCGCTGTTAACAGGGGGAATGCTGAAGCAGCGAAAGTGTTCCCCGCGCTAGCGGGGATAAACCGCGTGACTACTGCAACTTAAATCACGACGAAATGTGTTCCCCGCGCTAGCGGGGATAAACCGTCTCTGCCGCTACCGCGCTGGACTGCGCCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTAATCAACTCAATGCGCTCACAACGCAATGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAAATGTTCCCCGCGTCAGCGGGGATAAACACGTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 266-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWG01000081.1 Salmonella enterica subsp. enterica serovar Derby strain Sa79 C789, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 265 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 204 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 143 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 82 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAG # Right flank : GTCAACGGCCTGCCGGGTAAATCGGTTCACGTGGTGTTCCCCGCGCCAGCGGGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //