Array 1 476941-475830 **** Predicted by CRISPRDetect 2.4 *** >NC_019693.1 Oscillatoria acuminata PCC 6304, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 476940 37 91.9 40 ..T...CT............................. GTCATAAGGGCTTTATCAGGAAAGTTAGGGTCAATACCTA 476863 37 100.0 36 ..................................... TTAGATAGAAGTCACATTCTTGAATTAAGAAGTAAG 476790 37 100.0 41 ..................................... AATTACTTGGACGTGGAAATGAGGGTCCATCCATCTAGCAG 476712 37 91.9 40 ..T.G.C.............................. TAATCATTCTCCTTATAAGGTGATTGGTTACTTAATGGAA 476635 37 97.3 40 ......................T.............. AACAGCCCTTGCTGCTATCCTTAACCGTTGGTCACCCAAG 476558 37 94.6 38 ..................T..........G....... TCTTAACGCATAAAGTAAACTTATTAGCTTATTCCTGG 476483 37 100.0 41 ..................................... CCATACTACCAAGTACCATTTCTATAGGCTATTTCAACATT 476405 37 97.3 42 ..T.................................. ACGACCTTAGAGATAAGTTCAGGAGTCTCACAGGCGATCGCA 476326 37 97.3 37 .............C....................... ACATTCTTACGAGGAGCGCTTAGAAACGGATGTTCAG 476252 37 97.3 35 .............C....................... TCACTGTGGCAATGGTTGATGAATTTATCCTCATC 476180 37 97.3 37 ......................T.............. TCAGGATTGAAAGCATCTTTAATCCATTTAGTAATAC 476106 37 97.3 41 ......................G.............. TTCATATGTTAACTCCACCTCGTTGAAGGCGTCCATTCCAC 476028 37 97.3 44 ..A.................................. AGGGTCACTTGCACTACCCCACCCAGATTTTCCCGTTCCCGAGC 475947 37 94.6 44 ..T....T............................. AAAATTGCCATACAGAACGCTTCGACTAACCATTCCATAACTAT 475866 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================================ ================== 15 37 96.8 40 GTGAATTCCTATCAATTCCCCGCAAGGGGACGGAAAC # Left flank : CCTGGATGAGGAAACCCTCACCGGGTTGATGGAGAATCCCTGGGTGAAGGTGTTGAACCTGTCGGAGGACAGTCTGCGCGCCTATCCCTTGACTTGGACGGCGAAGAAGCTGGCAAAAATTTACGGCAGTCCTCCCATGTATGAACCCCCGGATTATTTGATTTTTTGAAGGGTTTATTCCGGGTTAGGGGGGGTAAGTTTTCCCCAATCCTTTGCCCGGTGGGGTTTCTGGCTTTTATAACGGAATGTAAATTTTCCCCGTGATTCGACGGAAGGAGCTAGAGAGAGTATTTCAGCGTAATTTTGAGGGAGAATGAGAAAAAGCGGGTAAATTCCCGCTTTTTTATTTGACCCTTTTGCGCTATTGTTTCGTTATGGACTGATTTCCGTCGGTCTTGCCCCGCTAAAGCAGCGCGTTAAGTTTTGTAAAGTTGACTCTCTGTACTTTGGCGCGATCGCACCTTGAAAACTACATAGTGCAAGAGTTTCAACAGGATAGG # Right flank : TTCAGCTTCTGGTAACTGGGGTGGATACCTGGGTCCTAGCTGACTGTCCAACAAAACATCGGTGTTTCTTGTCGGTGTGCAATACTTGCGCTTTCCATCCAGCATTTCTCACTAAATACCCAGTCGAATGTCCACGCACAACAAGGCAAGGCAGTAATTGCCGACAACTTAATATCAATTCTCTAAAAGTTTTATACAAATTTTATACTTGTGTAGCCTCCGCTTCTCTTCCTCTGGTGTGTGGACAACCGGGAAGGAGGGGTCTATCCTCTAGGAAATATCAGCGCTATGGCAGCGATTCATGTTGAGGATTGACTGCTGACTCTCTGCGGTGTGACTTTTGGCTGAATCTAGGTTTAGATCACCCATTCCCGGGTTTTAACCCGTTGATTTGACCGAATCGCCTCCGATGGGGTGCGCTGAAATTTACTGTTTTTCCAGATGACCCCAATGGAATCCAACATTTTCAACTCTCCTTTAACCCCCGCGCCGGATGCCTT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAATTCCTATCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 3497449-3497270 **** Predicted by CRISPRDetect 2.4 *** >NC_019693.1 Oscillatoria acuminata PCC 6304, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 3497448 37 100.0 34 ..................................... TTGAGGAGGTCTCCCCTGGGGCGATAGGTGTACG 3497377 37 100.0 34 ..................................... TCAGCAAAATCAATATAATATCGTTCTGAATCAT 3497306 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 GTCTCAATAACCTCTAATCCCTATCAGGGATTGAAAC # Left flank : CGCCTGTTCCACTGGTGGCATCGAGTGCGGGATGGAACTTTATCCACAGAGTTGTTCCAAGCGGCTATGGCACGGCTACGTCAAAGCGTTCATCATCTGTTGAGTGAAGCGGCGAGCCTATGTCATTCCAGCCGAGAGCAAACGCCTTTGGCCAAAACCGCACGCACCTGCGAGCAAATTTTAAAGCTCGAACCGGCCTTGTGGACGTTTGTCGAGGTGAACGCCGTCGAGCCGACGAATAATACAGCCGAGCGCGCTTTCCCCCGGGCAGTCATTTGGCGTGACTTGAGTTATGGCTCCTGGTCTCGCTCGGGTAGCGAGTTTGTGGAACGTTTGCTGACGGTGGTCACATCTTTACGGTTTCAGGAACGCCCGGTGTTGGAGTTCTTGATGCAGGTTTTGCATTCTGAGTCGGTCTCTCTCCTCCCTCTACCCCCTGAATAGTTACCGCGCAAATGCACCTTAAAAACTTTATATGCCAACGGTTTCAAATACCAGTG # Right flank : AGGCGATCGCCTCCAAAAAAGCTGCGTGGGTTGATACTGGCGAACGCTATAAGCTGTCAACTTATAGACTCGGCCATTGCTTTTATCCCACATTCCGCAGGTTGAATCAAGTCAGTAAATAATATTTCTGGCAGGAGGCCCCTAGGAACTGAAGGATCCATCGCCGCTCATCCGTTAAATAAGTGATTTTCTTGACTCCATCAACTGTAAGCAAGTGAATGGATTGAAAACATTGAAAAACCCATCGTAGAGTTGGGGTAGTGGTGGGTTTACCTACTTGATTCTTAATCGACTTTTTTGCTTGAGCCAGAGCCTCTCTTAATGCTCTTTGACCTAAACTATACACTAACAAACACAATCCCATCACCATTGCTAGGGCTTCTATTCGTTCGGGATTTTTTAGGAATACACTATCGGTAAAAAACATCGGGTCTTTTAAAAACCGAAATCCTCTTTCCGTCGATTGTTGGTTTTTGTATTCCTCTAATATTTGTTCATCG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATAACCTCTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 3 4394995-4398973 **** Predicted by CRISPRDetect 2.4 *** >NC_019693.1 Oscillatoria acuminata PCC 6304, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================ ================== 4394995 37 100.0 36 ..................................... ATGTCGCAAACGGAGCAGATGGCGCAGGACCTCTTC 4395068 37 100.0 35 ..................................... CGCCTGGGGGTTTAATCATTGGTGCACAGATTAGG 4395140 37 100.0 33 ..................................... GGTTGCCGGGTTAATCACTAAAATCGAGGTTGA 4395210 37 100.0 34 ..................................... CAGCGTGATCTTGATTTAGTGATGCAGCAACTCA 4395281 37 100.0 35 ..................................... CAGCGTGATCTTGATTTAGTGATGCAGCAACTCAA 4395353 37 100.0 34 ..................................... TCAGCCATTTCTATCCTCGGGGTGTGTCATTTGA 4395424 37 100.0 44 ..................................... AAGTAGAGTATCCCTTTATCCCGGCTGCTTTACAGGCAGCCCTA 4395505 37 100.0 34 ..................................... GTAGTAAACGGGGATAACTCGGAAGGTTTTCATG 4395576 37 100.0 34 ..................................... GACACCCTGATTAAACCGACCGGACTGATTTCCT 4395647 37 100.0 31 ..................................... GAATAAGATCGGCAATCTCGTTTGTACCCAT 4395715 37 100.0 35 ..................................... TCTAACCATCGATCATGCCACTGAGCGCCAAAGCG 4395787 37 100.0 34 ..................................... TGGGTTTGTCGTACCGGAACACCTGCGAGAACAA 4395858 37 100.0 41 ..................................... CTCATCCTTTTTGGCTTGGATCGCCATTAGGACAACACTAA 4395936 37 100.0 35 ..................................... TGGTTACTCACTTGAACTCCTTAACAAACTTGGTT 4396008 37 100.0 33 ..................................... AGAAGCCATCTCCCATGCGCCATTTCCGAGAAT 4396078 37 100.0 36 ..................................... ATAATCTTAAAAAGAATATATATAGACAAAAAAATG 4396151 37 100.0 35 ..................................... TTTCTCTTTAACAAAATGAACCCAGAAGTTTCCAT 4396223 37 100.0 34 ..................................... AGTGAACAGCCTGTGGTCGTTGAGCGTAACGTTC 4396294 37 100.0 35 ..................................... CTATATTAAAGGATTTAGTGTTATTGGCTTATGTA 4396366 37 100.0 35 ..................................... TTAAGCTGTGCGGTCCAGAGCTCCGGATAGCTCTT 4396438 37 100.0 41 ..................................... AATAGTTGGGGTGGTGAAGCTAATTTTGGCAAAGCCTTGTG 4396516 37 100.0 34 ..................................... CTCGTTCGGCATCTGTAGGAGTTGCGGGTGCTGC 4396587 37 100.0 36 ..................................... CTCTCTTTCTAATTCTCCAATGTAATTCAAAGCAGT 4396660 37 100.0 36 ..................................... TTTGCCCTGGTGATTGCCTTGGCTAAATCAAACGAC 4396733 37 100.0 34 ..................................... GGAAATCTTTGCTGAAAGCCGTGAGGTAAGACCG 4396804 37 100.0 34 ..................................... AAGTCAATCATCATCGTCCCCATTTAGTCTCTTC 4396875 37 100.0 39 ..................................... GATTAGCTTATTTGCGGAAGGCTAGAATAGTCCGTGCTT 4396951 37 100.0 35 ..................................... TGTAGCCATCAGGCAAAATGCCGATGGTGGCGCTA 4397023 37 100.0 64 ..................................... ATAGGGCTTTCGATCGGTGGCGCGACCCCAGCTTGTTGCCGGGGGCTCATCGGAAAGAGGGGCT 4397124 37 100.0 34 ..................................... ATAGGGCTTTCGATCGGTGGCGCGACCCTACCAG 4397195 37 100.0 36 ..................................... CGTGATGATTCGGGTAGGTTGATTAGTGCAGAAAGC 4397268 37 100.0 33 ..................................... ACGGAATCCGGAGTGGTTTATGTTGTCAGTCCC 4397338 37 100.0 35 ..................................... CCTCTGCTAAACGTGATAATGATAATCGCCGTTAT 4397410 37 100.0 35 ..................................... TCAACGCTGCAACGACTGGCGTCTCACCAGTATCC 4397482 37 100.0 35 ..................................... ACCGACTGGAACCTCCACCTTTAACCGAATCAGTG 4397554 37 100.0 34 ..................................... GGGGACTAGGGTTGAGTTGCGTTACGACGGGTTG 4397625 37 100.0 34 ..................................... CGCCGCTAGGTTCGCTTGACTTGACGGTATAACC 4397696 37 100.0 35 ..................................... CTAGGGGTGAAGGGTCAGCATTCTGGCAAGGGCGG 4397768 37 100.0 34 ..................................... TTAGGAGTCAGGTTCACAATGAACAGCTTAACAG 4397839 37 100.0 33 ..................................... GGAGGATCTCAGGGTTCTCAAACCTGGGGTCAC 4397909 37 100.0 41 ..................................... ATTGAATTACGAAGCAATGCAAGATTTTAAAAGATTGCTTG 4397987 37 100.0 40 ..................................... GATATCCCCCTCGTTGTCAATGGCAATCTGGAGGATTTGG 4398064 37 100.0 36 ..................................... GCCGCTCCGGTCCAGCTTTCCTTCTTCTAGTTTTTC 4398137 37 100.0 36 ..................................... AAAAACTTTGCCGACTTTAAAGTAGTCCAACATCTG 4398210 37 100.0 34 ..................................... TGGAGCGAACCGGGGGATTTCCCCGAACAATTAC 4398281 37 100.0 36 ..................................... TGGAAAGCGTCGCTCTCCCACGATAGGAAATAACGA 4398354 37 100.0 33 ..................................... AAATATCACTGTACGGTTCTTGCGTACCTCTTG 4398424 37 100.0 36 ..................................... AGTTAAGACAAACAACACCGTTAGAAACATCATCAA 4398497 37 100.0 36 ..................................... ACCATAAAAGACTCAACAGGTGTGGCGATCGCAATG 4398570 37 100.0 34 ..................................... TGTTAGATGCTGCGATAGCTGACGCTTCAAGTGC 4398641 37 100.0 37 ..................................... GCTACTCCGGTTTGAGTGACCACTAAAGCACCACTAG 4398715 37 100.0 36 ..................................... ATCCGGTGAGCCTCATCTAACACAACAACCTTATAG 4398788 37 100.0 41 ..................................... TTAACAGGTTTCCGCAGGGGGAAGATTAGTAGTAAATTTAT 4398866 37 100.0 34 ..................................... AACGCAGCGGGCGAAAACATCATGAATCATGAAC 4398937 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================================ ================== 55 37 100.0 36 GTCTCAATAACCCCTAATCCCTTTCAGGGATTGAAAC # Left flank : CAAGTCTATAACAACTGACATTTTGCACCATTCTCAACAACCTATAGGAGTTAAAACGATTGGCTGCCTAATAGCGTGCATTCGTCTAAAGACGACTAAAAACACTACACCATAAGACTTTCAGTCGGTTTCAACCGACTGACCACCTGGTTCTGTTAAACTTAACGAGAGGAAAGCCCTTTTGCTCCATTTATATAGAATGCATCAGGGGCCTTAAAACCGAGGGACCCCACCTTAATTGTTATCTCGTTTGCGCGAACCCTAAGCTGTAGAAAACCAGGGGACAAAATTTGAGACTGAAATCCTGACTAGATAAGGCATTGAGTCTTTTTCCCGTTCTACTCGGTTCGCGCAAATCTTGAAACCTATACGGAGAAGGGATTTGAGGAGAAAATGAAGTTGACCTATTTACAAATCACAGTCTGTAATGGTATCCTAAATCTAGGTTCGCGCAAATGCACCTTGAAAACTTTATATAGCAACGGTTTCAACCACGCCCA # Right flank : CAACAAAATTTATAAAAAAACAAAATTTTATGAATTCATCGTTTACCCGTTCAGAGCTTAGAAAAGTCGCTAAATATTACCGATTGGTTTCTTGGGCTATTTTAGCTAGTCTTGGTGTGAACCTGCTCCTGCTATTATCAGCTTCTTCTCCTTCGACACAACTCATTGTTTTGATTTTACTTATTGTAGTTGGTATTTTTCAATTCTATGTTTTGTACAATTTAGGAAAAAGCCTTAATCTTCCCGGGGCCTTAATTATCCTAATTGTTTTGAGTGCATTCGTTCCCCTCCTCGCTTTAGCTCTCCTAGCTTATATGCATGACCGAGCTATGAAACTCTTCAAATCGGCTGGAGTAAAAGTCGGATTTATGGGAGCAAATCCCGCTTCTATTAAAGACGAATAGCCATCCAAATTCTCTATATTCTCAAGCTAAAACCGTTTTATTTTGATGATTGGCAACCTGAAAAATTTGGAATAAAATAAAAAATATAGGCTTCTC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATAACCCCTAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 4 5789186-5790985 **** Predicted by CRISPRDetect 2.4 *** >NC_019693.1 Oscillatoria acuminata PCC 6304, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================= ================== 5789186 35 100.0 40 ................................... CGGAATACGGGTACTTTGGCTATCAGCTCAAGGATATGGC 5789261 35 100.0 45 ................................... AACAGGGAAAGATGTTCCCACCTGGCTGATCATCATGGCTAAGTT 5789341 35 100.0 38 ................................... ACTACGCAACCCGCGAAGTGGTCTACAACACAAAAATG 5789414 35 88.6 43 C......C.......................G..A TTGCCGCTATTGCCAAAGCGAACGGGATGGAGAAAACTGGACG 5789492 35 100.0 49 ................................... TATCTGATAGTCGCATCGTTACGCCTAACAAACCTTTGCTGACTATCCT 5789576 35 91.4 38 .........A..................GA..... CATTCCGTTCGACGGATTTATCCCTCCAGGTTCCCCAC 5789649 35 94.3 37 ...G..........................T.... AAGCTGAACAAATTGCCAAAGTCTCAATTGATGCAAT 5789721 35 97.1 41 .........A......................... CTCTCGGGAATTGATATCGACCGTGCAGCATACCAAGAGAT 5789797 35 94.3 41 ..C.........................G...... GGGCAAGGGTATGATGTTCTCTTGGACTTCAACCCCGCTAC 5789873 35 97.1 45 .........A......................... GGTTTCGTACACTGCGTATGTGAACTATGCTCCCGTGGTAAATAG 5789953 35 100.0 42 ................................... GTTTCAAGGAATCGATAACTCAATCGCAACCGTGGTGTTGCA 5790030 35 100.0 45 ................................... TTTCTTTAACCTCGATAGTCAATCCCATTCCTCAGCGTTTTCCGT 5790110 35 97.1 42 .........A......................... AGTCACAAACCAGCTAATCATTAACGAAACTTTCTTCGGGGA 5790187 35 94.3 40 ......CC........................... TCAAAGACTACATCGCCGCCCTTGAAACCGCTGAAATCGT 5790262 35 94.3 46 ....T....A......................... ACGCCCCCGTTGTGGATATAACCACTACAGGTACGAACGACAAAGC 5790343 35 94.3 44 C..............T................... GGAGAAGCAGTTGTAGGTCTCGGAGTGTCAACCGGCACCCGAGG 5790422 35 100.0 39 ................................... TTTTCCGTGTAAATAGTGGAACATCCTGGACGGTAATCA 5790496 35 82.9 40 ........T....T.AC.....GT........... GTCAATTTTTACAAGACGCTACAGAAGCCATCTACACCGT 5790571 35 97.1 41 ..................................A ATGCTTCCGTAGTTTTCGACTAAGCTACCCTATGCTAATTT 5790647 35 100.0 37 ................................... CCGAAGAATCCCGTTCCGAGGTGTATTACCGAGGATA 5790719 35 100.0 43 ................................... GGGAAGGTAACTCCTTCACACGAGCCGATGCAGGAGCGATGTT 5790797 35 100.0 41 ................................... TTCAATGCTAATGCTGAAATCACTTCCAATTTCTCTGCGAA 5790873 35 91.4 43 ....T..........T..................T GGAAACCAACGATTGACACGACTATCGAATGGTTTAATAATAA 5790951 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== ================================================= ================== 24 35 96.3 42 GTTTCCAACGAGTCCGATTTTAACTAATCGGTAAG # Left flank : TTTTCCAGCATCATGGGGAGGCAGTGGGTCATATTCGCGAGGCGGTGGATTTGGTGCTGGTGGATTTTGGCGGGAAACCCAAACCTCGGGATGTGATGGTGCGCGATCGCTGTACTCACTATTTGATTATTACCAGCGACCCGGAGGCCCTGGCCCAATGGCACGATTTCTGTCAAGTGCAGGGGAAGTTGACCCCGGTGGCGGTGATTCACAGCGTCTTGGAGGACCGGGTGGAAGTCCTGCAAACGGAACCGTTTTTAGAAATCATTGCAGGGCCTTGGATGCGAGGAGAATCCGCCCGGATACCGGAGGCGTTGTTATCTGCGGTGATGAAGTTGCTTGTAATGTGAGGAATCGGTGACTTTTGCCAGGAGTTAGAAACCGGGTTTCTTTCATCAATTGAGGTTAAATGCCATAAATTGACGCAGAAACCCGGTTTTTTGCTCTTTTGCCAGGAGTTAGAAACCGGGTTTCTTTCATCTTCCTCGTTATGTAGACAA # Right flank : TTCCTCTGCCAGGAAGCCTGACTGAGAGGGGGGTCAAAGACCAGAGCCGCAGATATGAGTTACATCTTTTGGAACACAAGCATCTTGCTCGTTATTATTATAGTACATTCTTTAGGAGTACGAGCATCTTGCTCGCTAGAATAATAGCCAGCAAAATGCTCGCACTCCTTATCGCCACTGTACCATAAGAACCCGGCAACCGCAATCACCCCAGGATTAAAGGATAAAAACCATGACCGAACCTACCTTTTGCGACCCTCCCACCGTCGAAGTGCTGCAATGGTTGGCGCGGGGTTCTTTGAAAAAAAACTTTCTAAAAGCGGTGCGTTTATGGGTGCATTTGCAGTTACTCTATGGCGAATCTGACTCTCGCCTCGGGATAGTTCACCCCTTTACTTATGCTGATTGGCGCAATACCTTTTTTACCGATTCCCATCCCCGGGATGAATCCATTCCCCCCCTCCATGACTGCCATTGTCCTTGTGCGCGAACTGCCGCAT # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAACGAGTCCGATTTTAACTAATCGGTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 5 6235862-6234891 **** Predicted by CRISPRDetect 2.4 *** >NC_019693.1 Oscillatoria acuminata PCC 6304, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 6235861 37 100.0 34 ..................................... AGTCGGGGTGAGTCGTTGACGTTGAACAAGTGAA 6235790 37 97.3 37 ...............................G..... AGCCACTTAAACCATAATCCGGCTGATTGTCGCCCAG 6235716 37 100.0 38 ..................................... CCACTGTTTCAGCACCTCCCAGATTTCCCCCGCATAGA 6235641 37 100.0 36 ..................................... AACTGAATCGAGTCGGTGAGGATTTGGCCGGTTGAG 6235568 36 83.8 15 ..........................A.-..AA.G.T TCGACGGAGCGATCG Deletion [6235518] 6235517 37 100.0 36 ..................................... TTAATACGAACTAACCACCCTTCCTTTTTATTGCTC 6235444 37 100.0 39 ..................................... ACCAAACGATCGCACGGTGCGATCGCCACGCAACAAGCG 6235368 37 97.3 36 ....................A................ ATAAGTCATGATTAACCCTCTGATTGGTTTATTTAG 6235295 37 100.0 36 ..................................... TTCTCCAAATACCCTTTACAGCCAAAGAATGGGCTG 6235222 37 97.3 37 ................................A.... CGATCGCCACGCACAAAACGGAGCCTGAAAAGCCCTC 6235148 37 94.6 35 ......T..G........................... TTTTCAGAACAATACATAAGTGATGCTTTGTATGA 6235076 37 97.3 39 ......T.............................. CTAGTCTTCCCCGACTGAGTAATAGCGGGAATCAGCAGA 6235000 37 94.6 36 ..C.....................G............ CATTTAATCCTTGGGATATTGGTGATGCTCATGGGA 6234927 37 94.6 0 ......T..T........................... | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 96.9 35 CTTTCAGTACAATGAATCCCGGCAACGGGATTGAAAC # Left flank : TGGCTGCCTTGCTGGCAACTCTGAATATCTTGTCCCTACTCTTTCATACGTTGCTAGAGCTGCTCGACGAGAAATATAAACGGCTGCGAGCCCATCTGCCGACCCGCAAAACCTTTTTCGAGGATTTGCGCGCTTTAACCCGCTATCTCTATTTCGATAATTGGGATCACCTGCTCACCTTCATGCTCCAGGGACTTGAGCTAGAGATTCCCCTCAATAGCAGTTAAATTTCCAAAATGAGAATTGCTGAGAGGCACCACCCCCCCTAGACATGAAGCGACAACTATCCTATAATCAAAAGATGAAATGTTTGGCAGGGCGAAGCGGGGTCGATTTCCCCGGGGCTCCCGCCAAAACGCCAGAACCTTGACAATTCAATAGTTTCAACGATTCAGAGTCCGGCGGTCACCCAGGGGCCAACCCCTGAAACGGAGGTTTCCAAACCCTCCCGCCAAAATCCGCCACCGAATCCCCTTGGACTCTATCTTGGGGCGATCGGT # Right flank : GGATTTAGATTGCCTAAATGTCCCAAGATTAGTGATAAGTTTCAACTACATCAATCTTGGTCATCAAATTAAAAACTCATCACCCAATCGCACGTCATAGCTACAAAGACGCGGCATGGCCTGGGAAATTATAATACAGCAAAATAGGTTAGCGCAACGACTGGAAACTTTATAAAAAGCCTGACTTTATTAAGTACAAATTTAGTCTAAATTAACTAGATTTAACTTGTTTCTCTGCTCCTTCATCTCGACGATGATTTGCAGCTTTTGCATGAATTCATCTGTTAATTGGGAAAAGGCTTTTGCACCAATGGATGTGGGATGAGTTAGGAAAACGGGCAGGAAACTATCCACGGCTTTAGAAACATTGACATCCATTGGAATTCTAGTTTTAAAAATTTTGGTCTCTCCAAAATCATCATGGACTCGGCGCATGACTTGCCGGTAGTATCTACCTGTAAGTACATTCCCCGACATACTAAACACAATTCCCACCATGT # Questionable array : NO Score: 8.69 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTACAATGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 6 6251489-6253282 **** Predicted by CRISPRDetect 2.4 *** >NC_019693.1 Oscillatoria acuminata PCC 6304, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 6251489 37 100.0 35 ..................................... ATCGTTGAGGTGAAGGGCTACATAAAGGAGTAACT 6251561 37 100.0 35 ..................................... TATTGAGGGCGGTGTTTATGCACTCAGGGAAAGGA 6251633 37 100.0 38 ..................................... AACAGCATCAGGAATTTATGTTCACGTTGCGAACCAGG 6251708 37 100.0 36 ..................................... CTGTTCATGGGATAACCTAATCAAGAGAGCATAGAC 6251781 37 100.0 38 ..................................... TCTGCGGGCTGATTTCACCCCAATCCAAACTGAGGAAG 6251856 37 100.0 35 ..................................... TCATCCTCGACAACGAAGAATAAAATCATTATCGA 6251928 37 100.0 35 ..................................... CAACCTCCATCGCTATCTGGCGGGCAATCCGCAGG 6252000 37 100.0 35 ..................................... AAGTTCGTTTCTTCTCTTTTGAAGTAACAATAGGC 6252072 37 100.0 38 ..................................... CGTGCGGGCTTCCTTCTTCCCTGGGTTTCTTCGGTTGC 6252147 37 100.0 37 ..................................... TGACCGCACGATCGCACTCTGCGATCGCCACGCACAA 6252221 37 100.0 32 ..................................... CTCGACTGGGCCGCGCAGCTTTATGGGTTCAC 6252290 37 100.0 36 ..................................... ATGGGAGGCTACATCAGAAGCGAGAATTGGTTTAAG 6252363 37 100.0 39 ..................................... ATTCAAAACAAGCGTGGTGCTGCTCAAATGTGGGCGCAT 6252439 37 100.0 36 ..................................... TTTGCCTCCGTTAGGGCGATCGCCCCCATAATCATT 6252512 37 100.0 37 ..................................... ATTTCGTTTTGGAGTTTGGCTGAGAGCATGGACAGGG 6252586 37 100.0 36 ..................................... CCGAGGCAGTTTCGGATAGTGACCGTGAGGCGATCG 6252659 37 100.0 38 ..................................... AATAGTATTGTGCCAATAATGGCAACAATTTCAACCGA 6252734 37 100.0 37 ..................................... AAAATAGAAAAATAACGAAAAGCCCAATTTTCAATAT 6252808 37 100.0 35 ..................................... AAACTAGATTTCCGTTTTGACATGGCGGAGTGCGG 6252880 37 100.0 36 ..................................... GGACAGAAACTCAGTCGGACGATTGCGGACTTACGA 6252953 37 100.0 37 ..................................... AGGATAGGCGATTCCCAAAAACAGAACGACGGGAAAA 6253027 37 100.0 37 ..................................... CTGAACAAGACGATGAATCTTAAGAGCAGGAATTAGA 6253101 37 89.2 37 .....................TTGC............ TACCAAAGGGGAGTGACATTCACCTATTGAGTATGAA 6253175 37 100.0 34 ..................................... TTTAGTAGATGGAAAGGACTGATTGTAACGGCTG 6253246 37 97.3 0 ....T................................ | ========== ====== ====== ====== ===================================== ======================================= ================== 25 37 99.5 36 CTTTCATTACAATGAATCCCGGCAACGGGATTGAAAC # Left flank : CCCCCTCGCCAACTATGTACCCCGGCGGATTCATGAACAAGTCATCGAACGGAATCTGAAGCAAAAATATGTGGAAATTGAGACCCAGGAGGATTATCCCTTTTGGTTCCGCCAGCGAATCTTGAGATATGGGTCCAATGCCCGAGTCATCGACCCCCCTTGGATTGTGGAAGAAATCGCCACCATCCTCAGAAAAGCCGCCAGTAACTACGACGACATCCCAGGTCCCTAGAGAATTGCTCTGCTTCGGAGTTAAAATAAAGTGGAACGATTTTCCGCCTCCTGTGGTAGACTAAATTCATGCCAAAATTTGGCAGGGCGAAGCGGGGTCGATTTCCCCCGGGGTCCCGCCAAAACGCCAGAACCTTGACAACTAAATGGTTTCAGCCATCAATAGTCCGGCGGTCACTCAGGGGCCAACTCCTGAAACGGAGGTTTTCAAACCCTCCCGCCAAAAACCGCCACCGAGTCCCCGTGGACTCTACCTTTGGGCGATCGGT # Right flank : CTTGTAGCCGATCGCCATCATCTTGTCCGCTGTACCTCTTGCCCTCTCCTAAATCCCTACAACAGGATAGAGACTTGCGATCGCAGCCCGTCAGCAGCGTCAATCAAAACGGTAATTTCCCCAAAAATATATTGAGTGAGAGATTTAGAGTCAGTTGATTTTGTCGCTCAAGACATCGAGTGATAACTTTTGGATGTAGACCAGGCTTCTCTCTTCGGGTGGGTTGCGGCTAGAAACTGGGGGGGAAATCTGGTAAAGTGAATTGACCCTAATACCAGACAACCAGCAGATGAACATTCGGATTGGCAACGGTTATGACATCCACCAACTCGTGAGCGATCGCCCGTTAATACTCGGGGGCATCCGGATTCCCCATGAGTTGGGATTACTCGGTCATAGCGATGCGGATGTGCTGACTCATGCGATTATGGATGCTATGCTTGGGGCCTTGAGTTTAGGGGATATTGGACTGTACTTTCCCCCCAGTGACCCCCAATGGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCATTACAATGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 7 7038938-7043138 **** Predicted by CRISPRDetect 2.4 *** >NC_019693.1 Oscillatoria acuminata PCC 6304, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 7038938 37 100.0 35 ..................................... TACAATCAAACACCCCTACATCGCGCCCTTCCCCG 7039010 37 100.0 34 ..................................... GAATGAAGCCTGCACCGGCGCGGATTCCATTCAA 7039081 37 100.0 41 ..................................... CCGCTTCGGCTTCACGCTGTCCGGGTCATCTGGATTATAAA 7039159 37 100.0 35 ..................................... GAGCATATTCTGCCCCAGCCGGAACCTTAATAAAT 7039231 37 100.0 34 ..................................... GTGGAAGGGTTCCGCGAAAGTTCAACCAAAAATG 7039302 37 100.0 34 ..................................... GACGTGGCAACTCCCCCGGCGCTACTACTCCCCC 7039373 37 100.0 35 ..................................... GCTGCGAAACTTCTTCCCACATCTGAGGGTTGTTT 7039445 37 100.0 34 ..................................... CTTGCGTACACTTGCGCTGGAATCACTCCCTATG 7039516 37 100.0 34 ..................................... AAGTTCATTATTGCAAACACATTCACTAGAGCCA 7039587 37 100.0 34 ..................................... TACTTATACGCAACGCATTGTATAGCAGCATAAC 7039658 37 100.0 38 ..................................... AGCCTTAAACTGCGAGTTGACCGACCGGAAAAAATTGA 7039733 37 100.0 36 ..................................... AAGCAAGAAAGGAATCAGGATCGGTGCGATCCTGGA 7039806 37 100.0 34 ..................................... GGAGCAAGCTCAAGCAGACGCCAAGCTGAGAGAA 7039877 37 100.0 36 ..................................... AACGCATTCTTTCCCATTTAATCTCTCCTACTATGT 7039950 37 100.0 35 ..................................... GGCTAACCGTAAACGAAACACTGGAGGCGCTTAAT 7040022 37 100.0 33 ..................................... CCGGTAGCAAGATGGGGCTTGCTAGTGACCTCA 7040092 37 100.0 41 ..................................... TTCGTAATATTCCGGTGGGTGCATCCCCTGGTAAGGGTACA 7040170 37 100.0 37 ..................................... GTCCTCCCCCCGGCTCTTAGGGGGGCGGGCATTTTAA 7040244 37 100.0 37 ..................................... AAGGGGGGGAGGATTGCCCTCTCTCAGGGCCTTGCAG 7040318 37 100.0 34 ..................................... CGAATACTCATCGTGCGACTGGAGTAGTGATGAG 7040389 37 100.0 35 ..................................... CTATCGGACCAGAATCTGGATTTACCGGCTCAATC 7040461 37 100.0 34 ..................................... CACCAGACGCACGGACCCATCGGCCCAGACATCG 7040532 37 100.0 38 ..................................... ATCCGAATGATCGGACCTTAAATAATTTCTGCCATTGG 7040607 37 100.0 34 ..................................... GGACGCTTCTCCTTGAAGCCTTAAACGAAGTAAA 7040678 37 100.0 34 ..................................... AGTTGAGGAATTCTCGACTGAGGAGATTGAGGAG 7040749 37 100.0 36 ..................................... ACAAAAATCGAGGAAAACAAACTTTTCAGCGAGTGG 7040822 37 100.0 34 ..................................... AAATATCAACTCAAAAACTTCTATCGCGACTATC 7040893 37 100.0 34 ..................................... GCAATCATCTGACTCGCCTTGTAGATAGGCTTTG 7040964 37 100.0 36 ..................................... GCTTATCAATCCGACGAATCCGGGGAGGGAATGCGG 7041037 37 100.0 34 ..................................... TTGAGACAACACGAAGCTACCGGAGAATCCATCA 7041108 37 100.0 37 ..................................... AGAAAAAACCCTTTTCTGGAACTCTTATGCTGTCCCG 7041182 37 100.0 38 ..................................... GACTTTGCTTTGGTGAAATCGACTCACCAACAATCCGA 7041257 37 100.0 34 ..................................... CCGATCACCAGGGAACCATCCAAAAATAGGGAGG 7041328 37 100.0 36 ..................................... TTTGTCTTACCCGACAGAGATGATTAATCGCCATGA 7041401 37 100.0 35 ..................................... GCCGCTGCAAGTGGCTTCATTGCAAGCTCAATGAA 7041473 37 100.0 35 ..................................... GTTCATGCGAGAAAAGTTGGGCGGTAAATAATAAG 7041545 37 100.0 36 ..................................... CAGTAATTTGTCTTACCCGACCGACTGCCCGACAAG 7041618 37 100.0 37 ..................................... ATTACAGGGGGAGGAAGCGGGGATTTGCATATAACAG 7041692 37 100.0 40 ..................................... AGGAATATCGTGGTGATAGTATCCGGGCCGGTAGGTCCCA 7041769 37 100.0 35 ..................................... ACCCAACGCAGGCTCAAAGCTGAGAGAGAAGCCAA 7041841 37 100.0 35 ..................................... CATACAGGGAGCATTTAAAATCAGCAAAATGATTT 7041913 37 100.0 37 ..................................... ACTACTCCATAAATATAAGGATTTGAATTAAATAAAG 7041987 37 100.0 37 ..................................... TGGGGAATGAATAGAAAACAGATACTAAAGGAATAAA 7042061 37 100.0 41 ..................................... GTTTCAGGGATTCAGTCAATTGGGGCCACTGCGGTTTCCTG 7042139 37 100.0 36 ..................................... TAGCGAGACAACGTTCAATTTTTGGGCATACCTTGC 7042212 37 100.0 38 ..................................... TCATTATTACAAACAGACAGATGGGGGATTTTCAAATG 7042287 37 100.0 34 ..................................... AAATCAACTTGCGATGCTTGTTAAACTGCTTGCC 7042358 37 100.0 35 ..................................... TAATTGAATCATCTGCCCCGGCACGATTATCGGCC 7042430 37 100.0 45 ..................................... TTGGAATATGCCCTCCTCTGGATCGGTAATAGTTGCGATAACCCG 7042512 37 100.0 35 ..................................... GCAAGCGCGGCAGGGGTTGATCCAGGGATTGTGCA 7042584 37 100.0 39 ..................................... ATCGAAAAAACTGCATTCTTCCAGGGGCTTTCCACAAAT 7042660 37 100.0 34 ..................................... GTAACTCAGCAGGGTCCAACTCTGGGAGGGGGAT 7042731 37 100.0 43 ..................................... ATCGATATTACTACCCCTGCTGCTGACTCAAATCCCGTCCCAA 7042811 37 100.0 40 ..................................... ACACGAACATAGTCAGGGCCAACAACAGCAGCTTTTACAA 7042888 37 100.0 36 ..................................... TGGAATTTTTCATATCATCTGGAACCATCTCGATCC 7042961 36 89.2 33 ...T.....G..-...............C........ TATTTAGTTAACTCCTTAGTTAACTGAGTCTTC A [7042976] 7043031 36 91.9 34 ...T.....G..-........................ CTAAATATCTGGCGTAATATTCATCCATTGCTTG A [7043046] 7043102 36 83.8 0 ..TT.........-A...........A.A........ | G [7043110] ========== ====== ====== ====== ===================================== ============================================= ================== 58 37 99.4 36 GTCCCAATGACCTCTAATCCCTTTCAGGGATTGAAAC # Left flank : TCGGTAATTCACACTCAAAGCATACGGGTTTAGGCCGGATTAACCAGACTGGATATCAGGAGATGAGTTGATTTGACGGCGATCGGCTCTCTGTGTTTTGTATGAGGACAAATTATACTTATCACCTAATCCCCTAATCTTCCGAAATCAAACGATTCAAAACCTGAATGTTAAACCTGAGCCAAGGGGGTAAAATAAAAAGAGAACCCATCTCCAGAGTCAACCCGACAGATTCCCGCCTCTTTAATTAGCGCGAACCCTAAGCTGTAGAAAGCAAGGGTGCAAAAATAGAGCCGGAAATCCTTGATAGATCAGGCTTTGAACACTGTTCACCCGGTCTGGCGGTTCGCGCAAATGCTGAAACCTTTATGGGGAGATGATTTGAGGAAAAAATGAACCCGACCTATTTACAAGTTGGCCTCTGTAATGGTATTTTTATTCCAGGTTCGCGCAAATGCACCTTGAAAACTTCATATACCAAGGGTTTCAACCACCGGGGG # Right flank : CTTGAGCTTTCATCGATTAATCCAGGGGCAGAAATCTGCAAAACCTTTACCCCCGGTTTGAATCTGGGACCAGCTTCATTACCTCAAAGATTGAGACCGATCGCCTTTCTGATGAATTTCTTCTATTCAGGTCAACACTGCCCGAATACATCTTTATAACAAATTAGTAATTGACAAAACGTGATATAAAAATGATCGCCCTCTAGGGTGGAGTGGGTTGGGGCCAGAGCGATCGCCTGACCGAGAGTGACGGCTTTCTCTCTCAGTGCGATCAGCGGCTCATAATCTTCAGCAGCGGCTCATAATCTTCAGTATTTTAACGGACTACTCAATGGGATTTTTCTCTGATGAACGAGTAATCATACGGATTGACAAAATTACTCTGATATCAGTTTATGAAAGACTCAAAAAAATATTCCAATGTTGATTAAGTTATACGTTACGCAAACACCAACAAAAACAGGAGTAAGGTTTACTAATTATTAGAACAGTTATTTCTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCAATGACCTCTAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 8 7504261-7509285 **** Predicted by CRISPRDetect 2.4 *** >NC_019693.1 Oscillatoria acuminata PCC 6304, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 7504261 36 100.0 38 .................................... CAAAACTTCTTTTAGAGGCATTCTATTCCCCTCTTTTC 7504336 36 100.0 37 .................................... CGAAGCCGCTTACGCTTTTATAGCTCAGTAATCCAAA 7504410 36 100.0 34 .................................... CTGATTGTCAAGACTCGGACTTTTTCCATATCCT 7504481 36 100.0 37 .................................... CTTCAAACAGCAGACTTTCGGTTTCGCGACAGTGAGG 7504555 36 100.0 34 .................................... CTTTCAAATCTGGGGTGTTTGTCAGCAAGAACTA 7504626 36 100.0 37 .................................... CCTAAAGGAACTACCGCCCAAACAACGGATCTTTCAA 7504700 36 100.0 37 .................................... CTGAGCACCGTATCTGATCCAAATAAAAAAATCCCCG 7504774 36 100.0 36 .................................... CCGTTTTCCCCCCCAACCCCCAAAGGGGGGGCCGGA 7504847 36 100.0 34 .................................... CAACAATCAACCCAACATCTCCTAGACTAGGAAA 7504918 36 100.0 34 .................................... CTTTGGATCCAAGCCTTGCGGCATTGAAATTCAA 7504989 36 100.0 37 .................................... CCTGAAAGCTAAACTATCAGCACAAAACAAGCGATCG 7505063 36 100.0 35 .................................... CCGGTTTCGGTGTCTGGTGTTACCGGCAATTATGC 7505135 36 100.0 35 .................................... CCTGATGGCTCTGAGGGCGCAAGTATTCCCTATGC 7505207 36 100.0 36 .................................... CCACTAATTGTATAATCTATACCATCTGGTCTTAGA 7505280 36 100.0 40 .................................... CTTGCATTGGCGTACACCTTGCAATTATCTAATTTGAACC 7505357 36 100.0 36 .................................... CCGATACAATGATTGCGGATCAGTTACTCACCTGCG 7505430 36 100.0 35 .................................... CTAAGAAGGGTTACGCCCCTGGGTGGGCGTTTGTG 7505502 36 100.0 35 .................................... CCTAATGCAGCGCCTCCTAAGGGCAGCTTATGGGG 7505574 36 100.0 33 .................................... CTAACTAACCCAGCCCATTTAGTGGATAGGTTA 7505644 36 100.0 35 .................................... CAAACACGCTGAGGCGATCGCTAAAGCGTTTAATG 7505716 36 100.0 36 .................................... CACCCAATGGGAAAAACTTCCAGGTTTTGTAAAGCT 7505789 36 100.0 33 .................................... CGAAACACACTTCAAGGTAACATCACAGCATAA 7505859 36 100.0 33 .................................... CATAGTAACCCTTAAGAGGATGATTCCACCTTT 7505929 36 100.0 36 .................................... CTCCCTGGGCAAGTTTTAGCACCGGCAACTATTTGT 7506002 36 100.0 37 .................................... CATCTGCGGCTAACGCGGGTATTTCCGCTTGCGCCAA 7506076 36 100.0 33 .................................... CTTTCCAAATACTTGATTCTTGACTTAGCTATT 7506146 36 100.0 35 .................................... CGAGCGAGATTTTACCGCTTCCCTGGAGCGCCAAA 7506218 36 100.0 41 .................................... CATAAGTAAAACCACAAACATGAAGGTAAACATAGTCGGAG 7506296 36 100.0 34 .................................... CTTTGACCAAAAATGCCAAGCCGAACAAATAGCA 7506367 36 100.0 34 .................................... CCCAGTTTTTTCTCTCCAGCTTCCCGCGCCTTAT 7506438 36 100.0 37 .................................... CGCGGCTCCGGCTTCTTCCCCGGGTTTTCTCTCGGGG 7506512 36 100.0 33 .................................... CAAAATCAAGGTTGCAAAGCCTTAACTTTAGAA 7506582 36 100.0 41 .................................... CTCAGTATCAAGACCACTAGCAGTAGCCAGAAGCGCCAACT 7506660 36 100.0 35 .................................... CAATTCTTGGTCATCGCGAGAAATAGGAATTGAAA 7506732 36 100.0 36 .................................... CTTGTAAACATTTGTGACAATCCCTTGCTTTTACTT 7506805 36 100.0 35 .................................... CCCGCTCTGAGACTTGGAAGGAAAATTTAGGGAAA 7506877 36 100.0 34 .................................... CCATCTCGTCCAGGGGACTGAACTGATCAAGCTG 7506948 36 100.0 33 .................................... CATGGGAAAGTGACGCTTTCCAAACCGGCTACG 7507018 36 100.0 35 .................................... CTGTCTGCACAAGCTCCTTTTCCAAGAGGCTAATT 7507090 36 100.0 34 .................................... CACGAAACCTCAAACGACTCCCCCGGCAACTGGA 7507161 36 100.0 36 .................................... CTTGTGATGCCCTGCTGCAACGGACTTGTGGACTCG 7507234 36 100.0 34 .................................... CTGGGCGGTTGCAACAACGTTTAGGACTGACTTG 7507305 36 100.0 35 .................................... CCCACTGGCAACTCCACTTTCTATGCCATCTTGAC 7507377 36 100.0 35 .................................... CATATTAATGCTCCTGTTTGAGCTAAATTCTGTGG 7507449 36 100.0 35 .................................... CTTTGATGCACTTCTGGAAAACCGCACCTACAGTG 7507521 36 100.0 32 .................................... CCAAAGCCTATGATTTGATTGCCGCTGCCAAT 7507590 36 100.0 37 .................................... CTAACGGGTGTAAGGCTCCTAAAGGAACTTTCTGATG 7507664 36 100.0 34 .................................... CCTTCACCGTGCTGTCGTTAAGCTCTTTGTTCTT 7507735 36 100.0 34 .................................... CGACAAATCAAGGACCGACTTTTGGGAGGTGGTC 7507806 36 100.0 33 .................................... CTTAAAGTCCCGAGCCAAACGTTTGATATCTTT 7507876 36 100.0 40 .................................... CCCACAAGGATTCGAGTAACCGAGAGTCTTCCATCCGGTC 7507953 36 100.0 33 .................................... CGCAGTTAAGGCAAACACCGCGCCACCGATGCT 7508023 36 100.0 34 .................................... CAAATACATAGGGGTGACTGCAACTGCTACAATA 7508094 36 100.0 33 .................................... CACGGTATGATGGCTGGAGCGGGGATGATAATA 7508164 36 100.0 34 .................................... CATAGGTCTACTGCGTTTTGCCATAAAGTCCACA 7508235 36 100.0 37 .................................... CAACGGTGAGGTAGAAGACTACTATTTTAATTCCAAA 7508309 36 100.0 35 .................................... CTGGCATATATTTCAACGCCATAAAGTCCGGCAAC 7508381 36 100.0 36 .................................... CACGCCGTAAATGCTGATTGGGGTAAAAATTTCCTC 7508454 36 100.0 35 .................................... CGCAAATACAGGTATCCCACTGATGTCCCCCCAAG 7508526 36 100.0 34 .................................... CTTTGACAGCCCAATGCGCCTAATTTCAGCCGAT 7508597 36 100.0 35 .................................... CTAGCCTACTGTGAAACTTACGATAATCGGTTTAT 7508669 36 100.0 38 .................................... CAAATGAATGGTATGGGCATTGCGCCAAATACATATCA 7508744 36 97.2 34 ...T................................ CACTCAGGGATAAATCGGATATTGCCCATTTTCC 7508815 36 100.0 35 .................................... CCACCTAATCTCCTAAATTTGGCTGACACAATTAC 7508887 36 100.0 33 .................................... CTTTGACTCGTTACGTTCGCCCCGCTGAGGTGG 7508957 36 100.0 34 .................................... CAACAGGGTTAATCTCGTCCTGTTCTGTCTCGGA 7509028 36 100.0 33 .................................... CCCAGGAATGGAAAGCAGGGATTCTCCGGCAAT 7509098 36 100.0 41 .................................... CGGTCCCCAAACCCTCTCCCCGAGAGCGATTCATCAGTTAC 7509176 36 100.0 37 .................................... CGTCGTTAGCCAACACCAACACAGTCCCATCAGTATT 7509250 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 70 36 100.0 35 GTCCCAATGACCCTAATCCCTTTCAGGGATTGAAAC # Left flank : CGAGGACAAACGACGCACGAAAATTCATAATATTCTCAAGTCCTATGGACAGTGGGTGCAATTTTCGATGTTTGAGTGTGATTTGAACCCGACTCAGTACCAGAGACTGCGGATGCGCCTGAGTAAACAGATCAAACCGGATGAGGACAATATTCGATTTTTCTTCCTCTGCGCCTGCTGCCAAGGTAAAATAGAACGAATCGGGGGAGTAGAACCGAGGGACTCGACCATCTTTTTCGCCTAGTATTGAGCGCGAACCCCAAGCTGTAAAAAAGAAGGGGGCAAAATTTGGGGCTGAAATCCAGACGGGATAAGGCGTTGAATGCTATTCCCCCTTCCAGCCGGTTCGCGCAAATCCTGAAAGCTATACGGAGCAATGATTTGAGAGGAAAATGAATTTTACCTATTTACAAGTTGGCGGCTGTAATGGTATCTTTAATCTAGGTTCGCGCAAATGCACCTTGAAAACTCCATATACCAAGGGTTTCAACCACGGGCCG # Right flank : ACTGGGGGGATGACATGAAAACACTGGACCGATCGCCCCCCCACCTCTCTTTGTAGATTGCGATCGCCCCGGTGTTCCTTCTCACGTTTCCCTGAATTAGGGTAAATTCTCGGGACCTGCTCCGATGATGCCTACTTTGTGACGGAATGTGAGTTCGCCTCCAAACCAGCCGGTTACTCCCAATAGGCTGGCTACAATCAGTGAAAGAACCAATCCCCACGGTAAAATCGGTGCGGCAGGGTCTCCGAGTCGCGTCCACATATTGATGATACTCAGCAGCAGCACGCCGATATTGCCAATCATGTGAATCCATCCGGCGCTGCGATCGCGGACTCGTTTGATTTTCACAAAGTCAAACATTCCTGTGAGACCAGCGGCGACTCCACTGATGATTCCTCCGACAATCAACCAAAATGATGCTCTAGCCCAAAATAAATCCGTTGTTCCCCAATACACCACATCACTGATTAGGGCAGAAATTAGTAACCCGATCGGCATGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCAATGACCCTAATCCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //