Array 1 4415572-4411089 **** Predicted by CRISPRDetect 2.4 *** >NC_013131.1 Catenulispora acidiphila DSM 44928, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4415571 29 100.0 32 ............................. AGCGGACTCCGGCTCACCGGCGCCGGACCGGC 4415510 29 100.0 32 ............................. GTCACAGCGACACCGCCATCTCCGCGTCGATC 4415449 29 100.0 32 ............................. CGGCGCACTCCCTTCAGGTAGTCCCTTGATGT 4415388 29 100.0 32 ............................. AACACACGTTGTCGCCTAGGAAGGGACCTGAG 4415327 29 100.0 32 ............................. CGGGGCGCCGGACTCCCACCTGACCCCGGAGC 4415266 29 100.0 32 ............................. CAAGATCACCTCAAGGCCTGAAAACATTCCGA 4415205 29 100.0 32 ............................. TCTACTCGCGGATGTCGATCTACAACGAAACG 4415144 29 100.0 32 ............................. GATCTTACCGTGTCAGTGTCCTGAGTTGCTAT 4415083 29 100.0 32 ............................. GGCCTGCTCGAGGGCGACCTGCAGCAGGTTCG 4415022 29 100.0 32 ............................. GCCTCCCAGTTGTAGTTGCTGGTGACGCCGTT 4414961 29 100.0 32 ............................. CCTGCAATACCGCGCCGTCCGCACCCTCGGCC 4414900 29 100.0 32 ............................. GACATCTTCCGGACGGAGAACCGGTGTCTCCG 4414839 29 100.0 32 ............................. GTCAGGAACTGGGGTTGTGCCGACGATCCGAT 4414778 29 100.0 31 ............................. GCTGTTGGAGATCTGGACCGACGCGGCCCCG 4414718 29 100.0 31 ............................. AGGTCGGCCGTGCTGTCGAAGTCGTCGATGC 4414658 29 100.0 33 ............................. GCCGAGCGTGCGCTGGAGGCCTACGACAGGCTG 4414596 29 100.0 32 ............................. GCGGGCCCGTGGACACGGATCATCGCCTTCAG 4414535 29 100.0 32 ............................. TGGGCCCAGCGCGCGGCCGACAACCACAGCTT 4414474 29 100.0 32 ............................. GAGGTGCGCCGCTACGCCGAGGCGAATGGGCT 4414413 29 100.0 32 ............................. TGGCACGGCGGCCTGGCCAGGATCGCGTCGTA 4414352 29 100.0 32 ............................. CACGAAACGAAAGGGGCCCGACGTGGCCGACA 4414291 29 100.0 32 ............................. CAGCGGGGATTTCCGTACCGACCTGCACCGGA 4414230 29 100.0 32 ............................. AGCGGTCCGCCTTCGCTGTCCAGGCATTCGGG 4414169 29 100.0 32 ............................. GAGACGCGCCTGGTGGGCCAGGGCGCCGGCAA 4414108 29 100.0 32 ............................. AGCGCTTCGTCCAGGTCCCGTTTGATCAGGAA 4414047 29 100.0 32 ............................. AGTGCCGAAAGGGTTGCGCAGGTGTATGGCTA 4413986 29 100.0 31 ............................. CCCCGACGTCGCCCGGACGTCGGGGGGTTCT 4413926 29 100.0 34 ............................. GGATCCAGTTCGCGCTGCTCCAGACGGCAAAAAG 4413863 29 96.6 33 ............................A CGTTCGGACTTCGACCGCATGGACTGGTCACAG 4413801 29 100.0 32 ............................. AAGGCCGTCCGCGACCACGAGTTCATTGAGCG 4413740 29 100.0 32 ............................. GAAATCGTTCAGCATGGTGACGCCGTTGACGG 4413679 29 100.0 32 ............................. GGCTACCGCCTCAACGACTGAACCGACGCCGG 4413618 29 100.0 32 ............................. GCCTCCGACTTCAACGCGCAACTCAACGCCAT 4413557 29 100.0 32 ............................. GAGCGGTGGGCGGTGGCCTTGGAGATGCCGAG 4413496 29 100.0 32 ............................. GGCGGTCTGAGCTACGACGACTGCATGCATCT 4413435 29 100.0 32 ............................. CGGCAGCGTCCCCGGCTCCCGCTGAGCGCGGG 4413374 29 100.0 32 ............................. GAGAGGAGGGGACGGCTGTAACGTACGACCTG 4413313 29 96.6 32 ............................T GCGGTCCCCAGCGCGCCGATCAGTGGCTCCAG 4413252 29 100.0 33 ............................. TAATCAGCTCGCAACGCGGCCCGTTCACGAACG 4413190 29 100.0 32 ............................. TGTCCCGACGAGGACGACGACCAGCCCGCCGA 4413129 29 100.0 32 ............................. TTGCGCCTGCAGGCCGAGCAGTCCGACGTCTA 4413068 29 100.0 32 ............................. AGGTACCACCCGACCTCGGGGGAGATCTTGAG 4413007 29 100.0 32 ............................. CGGCAGCCGCCGGTCGTACGTACCCACGGCCT 4412946 29 96.6 30 ............................G GGATCGCATGTCTCGACGCGGAAGCTTCGG 4412887 29 100.0 32 ............................. GAGCGCGTTCATCGGCACCATTAGCACCCTGG 4412826 29 100.0 32 ............................. AGGCCGTAGTAGTAGTTGACGCCGTCTGCCGC 4412765 29 100.0 32 ............................. TCTGCCCCGTCAGGGGCGGTAACCGCCGTAGA 4412704 29 100.0 32 ............................. AAGACCCTGCTGAACACGCCGAAACTCGCTGA 4412643 29 100.0 32 ............................. GCCCGCTTGAGGAGTCGTTCACGGTCCGGGTG 4412582 29 100.0 32 ............................. CCGGCCCCACTGCGGCCGAGCGGGTAGTCACG 4412521 29 100.0 32 ............................. GCGATGAACACCTTCGGCTTGAAAGGGCAGGA 4412460 29 100.0 32 ............................. TTCGGTTGCGGAGCCGTGCGGGCTCCACCTCG 4412399 29 100.0 32 ............................. TGTTCAGCCGCATCAACCAGGTGCAGCGTGAC 4412338 29 100.0 32 ............................. GTCGGATATCTCTGCCACTGTGTTCGCATGAC 4412277 29 100.0 32 ............................. TGCGGCCGCGGTCGGCCGTGGATGTGGGATGC 4412216 29 100.0 32 ............................. GGCGGGATCCAGCCCTCCTTGAACGCGCTGTT 4412155 29 100.0 32 ............................. CCAAGATCCCAGCCACCCGGCCGGGACCTTCG 4412094 29 100.0 32 ............................. CGCACGACCTGTTCGTACTGGCATGCGTGGAC 4412033 29 100.0 32 ............................. CGCACCATGTGCACTCCAGGTCCATGAAGTCG 4411972 29 96.6 32 .......T..................... GTCATGTCGATGACAGGCCAGCTCACGCTCAG 4411911 29 93.1 32 .CT.......................... ACTGGTCCGTCCTCAAGGTCAGTACTCGGATG 4411850 29 96.6 32 .......................A..... TCCGCGGACTCCTCCTGGCCCTCGCGCTCGTT 4411789 29 100.0 32 ............................. GCCAGTCCGACCCATATCATGGAAGTTTACGA 4411728 29 100.0 32 ............................. ACGTCGAGGCCGGCGGCCTCGCGGGCGCGGGC 4411667 29 100.0 32 ............................. TGCATGCCGACCAGGGTTCCGTCGGCTGTGTG 4411606 29 100.0 33 ............................. CAGCGGAATTCCTCGTGTTCGTCGCCGCCATCG 4411544 29 100.0 32 ............................. CTGCTGTGGGCGCACGTGATGACGGCCTCGGA 4411483 29 100.0 32 ............................. GGCGCGGGCTGTCATGTCAACTCCTTCAGTAG 4411422 29 93.1 32 ........T..G................. GGCAGCCTCCTATTGATCATCGCGGGCATCGT 4411361 29 100.0 32 ............................. CGGTATCCCGAGTTCCACGCGACATTCTGGTC 4411300 29 96.6 32 ..................C.......... GTGGGCAGTGTGCTGTCCCTGGCCTGGGGTTC 4411239 29 96.6 32 .......................A..... GACTCCAGGTGTTCGGCGACGTGATCGGGAGC 4411178 29 89.7 32 .C..........C....A........... CACTGGTTCCCGAACTCCTGCGCCGCCTTCTT 4411117 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 74 29 99.4 32 GTGCTCCCCGCAGGCGCGGGGCTGATCCC # Left flank : TAAGCGACGGCTTGCCAGTCCGCGACAGGGCCGCGCTGATGGACTGGGTGATCGATGAGCTAGCCCCTGGCCTGCAGCCCGTGGCACCTCTGAAGCGGTCGGAGAACACAGTCCTCAGAGGCGTCGTCGCCGCTTCGGGAGACACGATCGCCTCCCTGGATCTGCGCGACACAGTTGGGCCTTGCTGAAAGGCGGCGCTGACCGTGCTGTTCGGCATCGCCGTCACCACCGGCCGGGAGCTGCGGCCGTCCCACCGTAGAAGCTAGTCACCTACCACCTGCATGCTGCGCAGCCGCCGGGGTCGCGCCGCGCACCGGCATGGCGGCGAACCTGCCGAGCACGCCAGACCGTCATCCGGCCCGGCGCCGATAGTCTGAGGGCACTGCTGCGCACTAGCGGCTACTCCGCCTCGCTCGACTTCCCGATTGACACGTATGCCCGAATCTGCGGAACCCAACGGCAGCCGCATCTCAGCCCGATAGACAAGCACGTCAAGCAGA # Right flank : CCGTTCGTTCGGATGACCTGGACGGTCGGCACGTGCTCCCCGTAAGGCGTCTCAATGATGATCGGCGATCCACGACTGTTCGAGGCCGAACCCGGCGACATTTCTCCTGTTGTCGATCAGATCGCCGGGCTTATGCCGACAGCCCGGTGTGTCGCCGGTGTGATGCAGAACGTCGTCGACCGGGTATGGCTGCGTGCGGTGGAGGACGGTCGTCTGATCCGGGAGTTCGGCGCTGTCAGCGAGTCCGGCGAGGTCTGGATCGACCGCGGCGAGCGCAGCCAGGTGGAGCTTCCGTTCTGGAGCCGGGATCGGTGGCCCAAGCTGAGCGATGAGGAGTGGGAGACGGTGTCGGTGTTTCCCTTCTCGACCGAGAGCTTCGGCGACGCGGTGATCGGCGACCTGGCTTTCGGCGCTCCGCTCACGCGGTTGCCGCGGCACGTGTACGAACTGCCGGTGACCGTCTTTGACTTGGACGCTGCAGCAGTCCAACGCACCGAGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGCTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4439803-4438272 **** Predicted by CRISPRDetect 2.4 *** >NC_013131.1 Catenulispora acidiphila DSM 44928, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4439802 29 96.6 32 ............................T CTCCGAAGCCTGATGCAGTCCCGAACCAGCAG 4439741 29 100.0 32 ............................. GGGAACTCGATCGCGTGCGCCAGGTCGCCGAT 4439680 29 100.0 32 ............................. TGCGCATCTACTCCATCGGCGCACGTCAGGTG 4439619 29 100.0 32 ............................. AAAAGAGGGGTCCGGACTCCTTGGGGGGATTC 4439558 29 96.6 32 ..A.......................... GGTGCGACCGGTACTGGCAGTACCGGTAGAAC 4439497 29 96.6 32 ..A.......................... TGCTGCGGATCCCGGCGGCCACCACCGATTTC 4439436 29 100.0 32 ............................. GCCGGGATCGCCCGCATGGAGTTCGATCTCCA 4439375 29 96.6 32 ............................T CACTGTGTGCCGAACTCCTGCGCCGCGCGCTT 4439314 29 100.0 32 ............................. AACGGCCGTTTGGAAAACTAGCCGTGCCGGGG 4439253 29 89.7 32 ..A........A.A............... TGGATCGGCTTCGCCTGCACGATCAGTGGCTC 4439192 29 100.0 32 ............................. TCGTCGGTGGCGTTGTACGTCTGCGCGTCGCG 4439131 29 96.6 32 ........................A.... GTCGAGAGCGCGCTCGGCAAGAGCCAGAGGTC 4439070 29 93.1 32 ....................A...A.... TGATGCGCTCAGTGGACAGCTGAACCGGTAAG T [4439065] 4439008 29 93.1 32 ..........A.............A.... CAGCTGCACTTCAGCATGCCGAGTTTCCACAT 4438947 29 96.6 32 ........................A.... AGCCCGCAGCACTTCAACACCGGACTGTTCGA 4438886 29 93.1 32 ..T.....................A.... GCCTTGCGCAGCTTGTCCGGCAGGGCCTTTAG 4438825 29 100.0 32 ............................. CCGCCTGGTGACCTGCACGTCCCTGTACGGGA 4438764 29 86.2 32 .....T........C..A......A.... GCCATCGGCATGCTGCTGGTCGGCGTGGCCGT 4438703 28 82.8 32 ...G....A-.......A......A.... GGCGCGACGTACTCTGTCGCGCAGTGGCTGTC 4438643 29 89.7 32 ..............C.TC........... AGGGCGTCCGCGTTATCGGAGTGCGAGGTCTC C [4438628] 4438581 29 89.7 32 .....T......T...........A.... CACAGCGGCAGCATGGCACGCTCGCCCAGGGC 4438520 27 86.2 32 ...............A....--..A.... CTCGGCCCGGGCAAGGCGGAGCAGTCCGTGGC 4438461 29 86.2 7 ........T....AC..A........... GCAAGGT TA,C [4438435,4438438] Deletion [4438426] 4438422 29 79.3 32 ...G.T.T.....A..........A...T CGCGAAGGGCGGTGAGGTCGCCTCGGTAGGCG 4438361 29 86.2 32 ...G...T.....A..........A.... TCGGCCGACCAGGCGCGCAGCTCCCTGCCGAC 4438300 29 69.0 0 .C........T.AA....A.A.C.A..A. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 92.5 31 GTGCTCCCCGCGCGTGCGGGGCTGGTCCC # Left flank : GACGGCGTACTACCCCGCAACCGGTGCCTTGCCGTTCTCAGCGGACTACATGAACGAGGATCCCACTACTACTATCACCGTGCTGACCTGTGTCCGGCCGTCTGCGTGGCCCGCCAAACCGCTCCACGCGAGATCTCAGCTGGCATCTTCATCAGCAACCCTTCGACCCGTGTCCGAGACCTGCTCTGGTAGGAAGTCACAAGCTACGGCAGGAAAAGGCAGAACCCTGCTGGCCTACACGACGAACAACAAGCAGAGCTTCGCCTTCCGACTCCACGACCACACCTGGCATCCGATCGACCATGAAAGCCTCACACCTATCCACCGGCCTACCGAACGGTTCGTCGCATTCTCATCACTTACCAAGACCGGCTGGAGCAAAGCCTCCCAGTGGCGGTGATTCGGAAGCAGGCAGGAAGAGCAGAATGACATAAATGCGTAGATCCATAGAACCCAAGGACCACAGCGCTACGATCGCGTACGTCAGCAGGTCACGCAGC # Right flank : TTCGCGGGGCGCTCAACGCCGCCGGCGCACCGGTGCTCCCCGCACGCAGGGCTGAGCCGAGCGGCTTGGCGAAATTGTTGGAGCCGACAGCAAGGGCGAGATCAATACCCACATGCGATCCGCGAACTCACCGTAGCCAACCCTCCAGCCAGCGTGACACAGCACTAGCATTGATCAACCGGCGTATCTTGCGTCTGGCCGCTATTCTGCAAGGAAGCAACGCCCCCAGCGCTCATGTTGGCCACGGCGGCCAGTGTTCCCCGGCATTTCTGGGGCTGATCCCTGTGTAGGCATCGAATCCAGCACACCGCGCGAATCGTGCTCCCTACGCATGTAGGGCTTTACCCCTAAGACTGTCCTGCACCATGCAGCTTGACCCGACCGCCTTCTTGCTGGTGGCGGCACAGCTCGCTTCGCCCCAACTGTGTGGGCTGGAATCCAGCACACTTGAGGTACGAAAGTTCGCGGCGAACGAAAGTAGCCGAAGCGCATCCACAGCG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGCTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [45-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 4464111-4461263 **** Predicted by CRISPRDetect 2.4 *** >NC_013131.1 Catenulispora acidiphila DSM 44928, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 4464110 29 100.0 32 ............................. AGCCGGCCCGGGCGGTGGTCAGCGTGGCGGGT 4464049 29 100.0 32 ............................. GCGAAACGGTCCGAGAGGTCAGCTATGAACAG 4463988 29 100.0 32 ............................. GGGTTCCCCGCCGCGTACCGCAGACCGGGCCG 4463927 29 100.0 32 ............................. GACTCGGGGGTGTCGCGTGGGGGCTGGTGAGA 4463866 29 100.0 32 ............................. GTAACCGCGTTCCCGCTAGGCAGGACAGGATG 4463805 29 100.0 32 ............................. GCTGACACCTTCGGCGACCTTGCGTTGCCGGA 4463744 29 100.0 32 ............................. TTCGCCTCGAGCTGCGCGACACGCCGTGTCAG 4463683 29 100.0 32 ............................. AGGCCAGCTCAGACGTACGGTCCTGAAGACCG 4463622 29 100.0 32 ............................. GTCACCCGGGATTCCCGTGACGATTCCGGCCG 4463561 29 100.0 32 ............................. GAGACGCTGCGGATGGTCGTGCGGACGTCGGG 4463500 29 100.0 32 ............................. GGGTCGCCGGCCGACAAGGGACCCCAGGTCAC 4463439 29 100.0 32 ............................. TTCCGGCCCGGCCCGCGGGTGTCGATCCCGGG 4463378 29 100.0 32 ............................. AAGGGTCCCCAGGTCTACCGGTGAGTCCCCGA 4463317 29 100.0 32 ............................. TCGGGCTCGGAGGTTCGCTCGTCGACGTCTGC 4463256 29 100.0 32 ............................. TGGGTCAGGGAGTCAAACTCGCCCTTCAGCTC 4463195 29 100.0 32 ............................. CACATCGGAGGACACCGCGGTGTTCACAGAAG 4463134 29 100.0 32 ............................. GCAGGCAGTCGGCTTGGCTGCGTGTCGGTCAG 4463073 29 96.6 32 ....G........................ GATCTTCCCGTGTCAGTGCCCTGAGTTGCTAT 4463012 29 100.0 32 ............................. GTGATCGGGTCGGACAGGTAGTCCTGCCGGGC 4462951 29 96.6 32 ..A.......................... CAGGGCTTGCGGGTCATGGGATCAGCCTCCGT 4462890 29 100.0 32 ............................. GGCCGTAAGCGGGTCGCCGCCGCGAGTGGTCC 4462829 29 100.0 32 ............................. CGGCCCGGCGCCGGTCTCATCACCAACCTGGG 4462768 29 100.0 32 ............................. GGCAGCGCGTTCTACATGCTCACGCCCGTCTG 4462707 29 100.0 32 ............................. GCGGGCGGGATCATGGCGGGCGATGTGGGCTG 4462646 29 100.0 32 ............................. GCCTCTATGATCACCCGTGACGCTGCGGCGCG 4462585 29 100.0 32 ............................. CGCGGCTGTGGGCGCCGCCGGTGTCGTTTGTC 4462524 29 100.0 32 ............................. AGTCGATCGGTGTGCTTGTAGACCGCGAGTGC 4462463 29 100.0 32 ............................. GATGGGCACCGATCCGGAGCGCGGGCACCGCC 4462402 29 100.0 32 ............................. TGGTCCCGGCCGCCGCCCTCTGATCACACCAC 4462341 29 100.0 32 ............................. TGGACGGAGGTCCCGGCATGAGCCGTATTGAG 4462280 29 100.0 32 ............................. GTGATGGTGTTGCCGACGACGATGAACGGCGA 4462219 29 96.6 32 ............................T GAGGCGGACGCGCGGCTGGTCCTGGACGACGA 4462158 29 100.0 32 ............................. GCGGCGCGAGTGAGAATGCGACACGCAGTCCA 4462097 29 96.6 32 .C........................... CCCGATCCGTCGTCGTAGGCCTCGGCGATCAG 4462036 29 100.0 32 ............................. GACTACCGCAGCGCCAAGACCAAGGGCCGGGA 4461975 29 100.0 32 ............................. CAAACCCTGATGTCCGGGGCGAAGTTCAAGGT 4461914 29 96.6 31 ...........G................. GTGAGATAAAGAATTGCCAGGCACGCAATGC T [4461886] 4461853 29 96.6 32 ......T...................... ATGACGAGCTCGGGGTGGTCAGTGCCTTTGCC 4461792 29 96.6 44 ..............T.............. TGGGGCGCGGTGGTCTGGCCTCCGCCGCTCAGGCCGCCGATCGA 4461719 29 100.0 32 ............................. GGCGAGGGGTACCCGCCGGAAGTCGCGGTCCC 4461658 29 100.0 33 ............................. ATCGGCATCATGTGCTCGAACCTCGACCCGCAG 4461596 29 96.6 32 ..................A.......... CTCGGTCGGCTGCGTGATCGTAAGGTAGGCGC 4461535 29 100.0 32 ............................. GTCCCCGCCGTTGTAGTTGTACTCGGTCTCGC 4461474 29 86.2 32 ...........GTAT.............. CGCGACCGTGGTTCCCAGCGTCGTTCCCGCTG 4461413 29 82.8 32 ...........GTAT.......C...... GTTCTCCGACTCCGTTTGAACACCGTGAACAA 4461352 29 75.9 32 .......TT..GTAT...T.......... GCCAACGTGGTACTGGCCGGCCCGGTGAACTC 4461291 29 82.8 0 ...........GCAT.........G.... | ========== ====== ====== ====== ============================= ============================================ ================== 47 29 97.9 32 GTGCTCCCCGCAGGCGCGGGGCTGATCCC # Left flank : CGCGACTTAACATCTATCGCACCTTTCGCATTTACATGGCTCGTCGAACCCTTCTGTGAAACGGCATGAAGCCCCGCGCTGAGGACTCCGCCCGCTGCCACGTCTTCACCCAGGCGCTTCGGTTCGTCTGCTTCGTCGTCTCCACCTTCGCCATCCAGCCAGCCACCAGAACCGGCGACGTCAACTGAAAGGCGGCGCTGACCGTGCTGTTCGGCATCGCCGTCACCACCGGCCGGGAGCTGCGGCCGTCCCACCGTAGAAGCTAGTCACCTACCACCTGCATGCTGCGCAGCCGCCGGGGTCGCGCCGCGCACCGGCATGGCGGCGAACCTGCCGAGCACGCCAGACCGTCATCCGGCCCGGCGCCGATAGTCTGAGGGCACTGCTGCGCACTAGCGGCTACTCCGCCTCGCTCGACTTCCCGATTGACACGTATGCCCGAATCTGCGGAACCCAACGGCAGCCGCATCTCAGCCCGATAGACAAGCACGTGAAGCAGA # Right flank : TCTGGGAGTCAGGGAATCGATACTGTGCCTAAGCGTCTGTAGCGGTTTGAAGTGGTTCTGGCACAGATCTTGGGGTCGGACGGGATCAATGATCATGGAGTATGCGGGCGCAGAGCAGGTCCAGGTTCGCTCGGCCGTACATATCCTTCTTGATCTTCTTGATGCGGTTGACGTTGCCCTCGCAGGCCTCTGAAATAAACGGCAGACTCAACCCGCTGAGCACGGCGTCGTAGCCGTCGAGCACTCGATGGCCTGCACAGTCTGGCTGTCGATAACGCCCGCGCTGGGTGTCGGGTCCCGTCCGCTGTGGGACCGCTCCGGCTCGCGCAACTCGGCCAGGATCTGCTCCCACCGGCCCTCGATCCGCCATAACCGCCAGTAGTGGTAGACCGTCTGCCACGGCGGAAAGTCGTGCGGAAGAAGCCTCCAGGCGCATCGAGCCCGCGCCCAATAGGCTAGGGCGTTGACGATCTCACGACGCGGGTGAGCCACAGGGCAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGCTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //