Array 1 146073-146922 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBRS01000033.1 Cutibacterium avidum strain P313 151, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 146073 36 100.0 40 .................................... CATACGTTAACACGGGGTTGTGTGAGATGGGCGACATTCC 146149 36 100.0 39 .................................... TCAAGGAAGTTCACATCACGGAAATTCTTCTCGTCATAG 146224 36 100.0 37 .................................... GCCCCGATCTGCACGAGGACTCGGTGTACAAGATGCC 146297 36 100.0 36 .................................... TCCAGGGCGGCGTCGCAGCGCCCATGGGTGGCCCGC 146369 36 100.0 37 .................................... TCAGGACATGTCCTCGTACCCGTGGGTGATGCAGGGA 146442 36 100.0 39 .................................... GGCTACCCGACGTTCCGCACTCGCGCCGAGGCGGTCACG 146517 36 100.0 38 .................................... TTGCCGCCATGACGCCACTCGGCCCAGTGATTCCTCGA 146591 36 100.0 37 .................................... CGGAAAGAAGTGGCGCACCAAGGACGCACTGTGGTCT 146664 36 100.0 38 .................................... CCAGCGCCACGCCCATCCAGATGTTCAGGAACGGCATG 146738 36 100.0 39 .................................... TGTTCGTGGGCGGGCTCCTCGGCGACGCGCTTGACTCCC 146813 36 100.0 38 .................................... CTGACACCTGAGGCCACAGAGAAGGCCTTAACCGACCC 146887 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 12 36 100.0 38 GCCTCGGCTTAACTGCCGAGGCAACTTCGTTGAGGC # Left flank : ATCGCGGGGTGACGGTGAGATGAGTCGCCAACCTGACGAGATGGCATATCTCATTGCTTACGACATAGTGGATGATCGCCGTCGCGACATGGTTGCGAAGGTGCTTGGAGGTTATGGCAACCGTGTTCAGTACAGCGTTTTCATTGTGGTGTGTACCAAGGCTGCGCTTCTTCGGCTCCGCCGGAAGCTGACGGGGGTCATTGATTGTGAGGAGGACTCGATACTTGTAGCGCTGTTGGGGCCTGATGGAGGGGCGGACCTCTCAGTGGATTGGATAGGTCGGAGCCGAAGAGTGTTTGACGATGCTCCGGTCATCGTCTGATGCGAGAGGGTCTTGAAACACGGAATCATGTTGACCGCTCGCAGCTGCGAAGCTGGTTCTCAGAGACGGTTTGACCGAGATTTCTCGGTCTGGATCTTGATAACTACGTGTTCCTGGCGCGGGCCCCTCGCGAAGGGTTGATATTCTTCCTAATGAGAGGCGCTTGGATCGCCACGCT # Right flank : CTCTCTCGTCCCTCCCCCCGGTGTGCGCAGCCACAGGGGGCCTCGGCTTAACTGGCTCTTCCCAATCATCGGTGGAAGGCGGGTCTGAAACCGCCGGTGTCGAGTATTGCCCTTCGGATGTAGTTGGTCAGGTTACGGAACCCGAGAGCGGTCCCGCGGAGGTGCTCGAGCCGTCCGTTGATCGCTTCGGTAGGGCCGTTGCTGGTGCCGGGATGATCGAAGAACGCCAGGACGTCGCTGCGGCGCTTGTTGAGCGTCCTGCCAAGTCTTGCCAACTCGGGCAGAGCCTTGGGGACCCCGTGGGCCAGCGACTCGATGATGCGGGCGAGCGAGGCCTTCCCGGCTGTGGCGTCCTTGCTCCGGTAAGCCGAGACCAGCTGCTGATAGACGCTCCATGTCACCTCGACGCCGACGTGATCATCGCAGGCGAACAGGTCCTCGAGTCGCTCGATCTGTCGTGGTCGGAGCAGATCCAAGCCGGTATGGAGTAGCCGCCGGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGGCTTAACTGCCGAGGCAACTTCGTTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 74813-74600 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBRS01000043.1 Cutibacterium avidum strain P313 161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 74812 29 100.0 32 ............................. GACAGGTCTACGGCATCGGGGGTGGCGTTGGC 74751 29 100.0 33 ............................. ATTCGCATCCACGGTGTCCCCGTGAAGAGTCTG 74689 29 93.1 32 .......T....................T TCGTTTCCGGCGTCGGTAGAGAATGACCAGGC 74628 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 98.3 33 GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Left flank : TCCCCGCCTACGCGGGGGTGAGCCGCTGAACCACACACCTCCCTATTCAAGGAAGGCGTCTTCCCCGCCTACGCGGGGGTGAGCCGGCCGCCATACCAGCACCAGCAAGCCCACCAACGTCTTCCCCGCCTACGCGGGGGTGAGCCTACCCGTGAAAAGGCTGCGGTAATGCTGGGTCAGTCTTCCCCGCCTACGCGGGGGTGAGCCGGAGGTCAGCATGGCTGACCTTGTTATCCAGGCGTTGCAGTTGGCGACAGCGGTCGTCAACCTCGCAGCCGCCGTGATTGCGGTGCGCAAGCTCCGCAAAGAAAGCCGCCCCCGAGCAGCAACTCGGAGGCGGCGAGGTGGCAAACGCCGGTAAACAACGGGGACCCGGTTCCACAGAGGGGCCGGGTCCCCTCCTTCCACGAAGTATACCTGTCTGCGCGGGCCAGGAGAAGGGGTCGCCGGTACGCCGATGAAGCGCTTAGGTCTCACCACAAGGGCCGTTGATTGAGGTC # Right flank : GCATCACCGCCTCACAGACCCCCAGCGCGGCCGATGGACCGCAGCCGGAAGCGTCATCATCGACTGGCAAAACCGATCACTGGTCCCCATCGACGGAAACCTTGATGCCGTCATCGACCACTGGGCATGGACTCACGACCCCCAAGCCCACACATCCACCATGATCGACCTTGGCACCGGAACCACCACCACCAGCCCCGTCACCGCAACCCCGGCACGCCCCCTCGGCCTCGCCCAAAACCACCTGATCGTCATCAGCGACGACGACCAAGGGCACCTGAACCTCTACGGGCTCAAATCTGCATAAGCACTGCGGCGGCGCGCTAACAAAGCCCGCCGCCACAGCACTTCACAGATCATCTCTGAGCATGACTTCTTTCAGCTTGCGCGCTTGCCTCTCCAAAGCCTCTTCTTCGGCCCGGTTCTCCAGCTCACCGTCAATACCAGCTGCAATGAACCACAGCAGCAAGCCACCGCCGACCAGCACACCGGCCAAGACC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 79099-75105 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBRS01000043.1 Cutibacterium avidum strain P313 161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79098 29 100.0 32 ............................. TCATCGACGAGAACACCGGCGAGGTGGCCCGA 79037 29 100.0 32 ............................. TGCCGCGATTCCTGCAGTGAAAGCCCATGCAA 78976 29 100.0 32 ............................. TGGTGAATGGCTGAGGATGAACTGCGATCCCA 78915 29 100.0 32 ............................. CCTTCTCAAATGAGGCGCGGGACCCGCCGTCG 78854 29 100.0 32 ............................. TTGCTGACCCGTCGCCATGCGCCCCGACTGCC 78793 29 100.0 32 ............................. TGTCCGGCATGTCGGCAGCCCAATTCAAAAAG 78732 29 96.6 32 ............................T CGCCAGCGGAGGTGGATTGACTTGCCTCGCCG 78671 29 96.6 32 ............................T TATATGCGCGTGGAGAATCCGTATCAGCCGGT 78610 29 100.0 32 ............................. CCTGTATATGCTGAGAATGTTGTCACCCTCGA 78549 29 96.6 33 ............................A GGCTGCGGTTGATGTTGAGGCACTGGCTGCAGC 78487 29 96.6 32 ............................T TCCGCATTACTACCACAAGGAGGCCCCGTGAC 78426 29 100.0 32 ............................. CGCGGTGGGGTGCGTTGGCGTGGCCTGGTATT 78365 29 100.0 32 ............................. GTTGGCGCACCCGGGTCCGGTAACGCCTTTAA 78304 29 100.0 32 ............................. GCAACAACGTGGTCGATCTGGACCGCGCTGGA 78243 29 96.6 32 ............................T CACACGTCGGCTCACCATACGGCATATCACAA 78182 29 96.6 31 ............................T GTTGGCCGCAATTCGCGGAACATTTATTTAA 78122 29 100.0 32 ............................. GTTCTCGAACGGCGTGCTAATCGAAAGATGAA 78061 29 100.0 32 ............................. GATCGTGTGGGCGCCCGGCTCGAGTCCGGCGA 78000 29 100.0 32 ............................. CGGTTCCGACGGGGTTCGCTTCAGATCGAGCA 77939 29 100.0 32 ............................. GACGTGGACCGGCTCGCCGCCACCGTCGTCGA 77878 29 100.0 32 ............................. CTCCAGCTCAGCCAGACTCCAGCGCGTCCGCG 77817 29 100.0 32 ............................. GCCCCGATCACGAAGGCCAAGGACATTTCTGT 77756 29 96.6 32 ............................T TCTCTCGGTGAGTCCATCGGCGTTCGTGCCCA 77695 29 100.0 32 ............................. TGACAGCCTCGGCGCGAGTGTGGAACGTCGGG 77634 29 100.0 32 ............................. GGGCTAGTTTGTATTATGGGTGGGGGTATAGT 77573 29 96.6 33 ............................A GGCCGTGCGCGGCGTCGCCGGAATTGCCGGAGC 77511 29 100.0 32 ............................. GAGCCCGACAGTGGACAGAAGCAGCGCGATCC 77450 29 96.6 32 ............................T CTCCTCGTCATCCTCATACAGTGAGAACATCA 77389 29 96.6 32 ............................T TTTCCGTCAAAATGCTTGCCCTCATAATCAGC 77328 29 96.6 32 ............................T AGTGGCGTGCCGTTGGGAACAAAGCAATGGCT 77267 29 100.0 32 ............................. GGTATCGGCGATTTTCCGATGTGGAAGTTCAC 77206 29 96.6 32 ............................T GCCTCGCCACCTACCTGACCGCTCGTCGTCGG 77145 29 100.0 32 ............................. CGGGGTGACCCTGGCCCGCAGGGACCGCCCGG 77084 29 96.6 32 ............................C TATTCGTCATCATCCATCAAGAACGGGTTATC 77023 29 96.6 32 ............................T ATCTAGGGCAGGCTCGGCGGGAGGCTCAATGA 76962 29 100.0 32 ............................. CCATGAACGCGGCTGTGGCGAGGGATTGTCCG 76901 29 100.0 32 ............................. GCCCGCCGTCGCGTCTAACATAAGATCCTCCG 76840 29 96.6 32 ............................T ACTGCCACCCTCTGTAACTATGTGTCAACAGA 76779 29 100.0 32 ............................. TGGGCTGATTTCGCCGTCCTCTCCACGTGGGG 76718 29 100.0 32 ............................. GCGGACAACGGCGGGCGACGCTCGGCTATCTG 76657 29 100.0 32 ............................. TGCCGTTCTGATGCCGTGGATGAAAATAGACG 76596 29 100.0 32 ............................. GACTGATGACATGGCTCGGACGACCATTCACG 76535 29 100.0 32 ............................. TTCACGCCCAACAAGCCGGGCCAGTGGGGGCG 76474 29 96.6 32 ............................T AGCCCCAGTTCCATGGAACGCTGGGTGGGCAT 76413 29 100.0 32 ............................. GCCAATCTGTACGAGGCCAACCTGCGTAAGGC 76352 29 100.0 32 ............................. AAGAAGGGTGGCGGATATTTTTATCCGGTTAA 76291 29 96.6 32 ............................T GCCGCCCATATGCCTGTCCATGCAGATCCGAG 76230 29 96.6 32 ............................T TCATCAGCCGCCGTTGTAGTTCTTTCACCGCC 76169 29 100.0 32 ............................. CGTCCACCGGGGCGGCGCAGCGGATCCTGGGG 76108 29 96.6 32 ............................T CCCTCACGGAAATTAGCACCATAGGGCACTTT 76047 29 96.6 32 ............................T TCACGCCGCGATCCCCGAGGCCCTGGTCGAGT 75986 29 100.0 32 ............................. AATATACATTCTCCCACCCGTTCTCTAGGGTG 75925 29 96.6 32 ............................T AGGACAACCGGCCCACAGTTATCGACCCCGAG 75864 29 96.6 31 ............................A ATTCGAACGCCCCGACGGCTTCTCCTCTTCA 75804 29 96.6 32 ............................T CAAACCCTTGTTGATCGGGATGTCGATAACCC 75743 29 96.6 32 ............................T TGCCCATCGTGAGCCACTGCTTTGTCCCCAAT 75682 29 96.6 32 ............................T AGTACTCTCAGCACCCGACCTCGTGAGCCTCA 75621 29 100.0 32 ............................. CGGGGGTGGGCGTCGACGAACTCGGTGATGAT 75560 29 100.0 32 ............................. GCCACCGCCGCCCGCGTCATCGACACCGTCGG 75499 29 100.0 32 ............................. CGGGGCCAACCTGCGCTGGGCCAGGCTGGGCT 75438 29 100.0 32 ............................. TGGGGCGTGAAGACTTCAGGGGTCTGCATCGC 75377 29 100.0 32 ............................. GACTGATGACATGGCATCCCCAACAATTCACG 75316 29 100.0 32 ............................. CTGAACCACACACCTCCCTATTCAAGGAAGGC 75255 29 100.0 32 ............................. GCCGCCATACCAGCACCAGCAAGCCCACCAAC 75194 29 96.6 32 ............................T ACCCGTGAAAAGGCTGCGGTAATGCTGGGTCA 75133 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 66 29 98.7 32 GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Left flank : GACGCCCCCGGAGATCCCGATGACGGATACGGGTGGGATGTTGTCGACCTGTGGGACGACCGCACTGGCACGGTCGCCGGCGGAAGATCGTGGGCATAGCCATGGTCGTGCTCGTCCTCACCGCCTGTCCCGCGGGACTGCGTGGCCACCTCACGAGGTGGTTGCTCGAGATCAGCCCTGGGGTGTTCGTCGGGCATCTGCCTGCACGGATCAGGGATGCCCTGTGGAGCCGAGTCGTTGAAATGTGCCACGACGGGCGGGCGATCCTCGTGTACTCGATGCGCGGCGAGCAGCATTTCGAGTTCCGCGTGCATCGACATGACTGGGACGTCGTCGACTTCGACGGGCTGAAACTCATGCAGAGGCCAAACAATAGGGCACACAACTCGACACTGCGGCCGGGATGGAGCTCGGCTGCGCGGCGACGTAGGACGGCCAAGCGCTAGATCGAGTACACTTGTATCTGGGCAAAGCTCCTGCATCAACCGTAGTCGGCTGGT # Right flank : GAGGTCAGCATGGCTGACCTTGTTATCCAGGCGTTGCAGTTGGCGACAGCGGTCGTCAACCTCGCAGCCGCCGTGATTGCGGTGCGCAAGCTCCGCAAAGAAAGCCGCCCCCGAGCAGCAACTCGGAGGCGGCGAGGTGGCAAACGCCGGTAAACAACGGGGACCCGGTTCCACAGAGGGGCCGGGTCCCCTCCTTCCACGAAGTATACCTGTCTGCGCGGGCCAGGAGAAGGGGTCGCCGGTACGCCGATGAAGCGCTTAGGTCTCACCACAAGGGCCGTTGATTGAGGTCGTCTTCCCCGCCTACGCGGGGGTGAGCCGGACAGGTCTACGGCATCGGGGGTGGCGTTGGCGTCTTCCCCGCCTACGCGGGGGTGAGCCGATTCGCATCCACGGTGTCCCCGTGAAGAGTCTGGTCTTCCTCGCCTACGCGGGGGTGAGCCTTCGTTTCCGGCGTCGGTAGAGAATGACCAGGCGTCTTCCCCGCCTACGCGGGGGTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //