Array 1 246143-247300 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822013.1 Streptococcus thermophilus isolate STH_CIRM_32 chromosome STHERMO Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 246143 36 100.0 30 .................................... TTTATAGACTCTGACAATACGATATAGAAT 246209 36 100.0 30 .................................... CTTAAATGCCAATGGTATTTTAAAAATCAA 246275 36 100.0 30 .................................... TAAATAAAGAAGCGTCTGAAATCGATTTTA 246341 36 100.0 30 .................................... CTTAATTCCCTCTCTGCTGCTCGGTTTACC 246407 36 100.0 30 .................................... ATCGTTCATTGCTAGTCGTTTGGCAAATCT 246473 36 100.0 30 .................................... TGATGAAGTTAATATCACGGACACAGGTAC 246539 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 246605 36 100.0 30 .................................... GCTATGATGACTTGCTCAGTATGTTTAGTT 246671 36 100.0 30 .................................... CGGGCTTAACATTCCACACAATATCCAAGA 246737 36 100.0 30 .................................... AATCTGACACAGCTAACCACATGAGCGACA 246803 36 100.0 30 .................................... TTATTAGTTTTGATATGCCACAAAATAATT 246869 36 100.0 30 .................................... CATCACAGATACCGGAAACGGTGGTTATTA 246935 36 100.0 30 .................................... CATAGGTCATAATAACTTCATCGGTTGGAA 247001 36 100.0 30 .................................... ATAGTATTAATTTCATTGAAAAATAATTGT 247067 36 100.0 30 .................................... ATTCGCCAAAATCGCACCGTTAACACTCAA 247133 36 100.0 30 .................................... TTATGAAAACAATATCACAGACACAGGAAA 247199 36 100.0 30 .................................... ATCAAGGTTGTTGAAGTCGAATGCTATTGT 247265 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 974015-972397 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822013.1 Streptococcus thermophilus isolate STH_CIRM_32 chromosome STHERMO Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 974014 36 100.0 31 .................................... ACGTCTGTCTAACTGGAAAGTACCTGCTAAT 973947 36 100.0 30 .................................... CTGTTCTCTAATCGAGAGGCGCGTGATTGA 973881 36 100.0 30 .................................... AAACCTCACTAGTCACTTAGTGCGGTTAGG 973815 36 100.0 30 .................................... TATTAAGTTTAGTCCCAGGTTTCTTATCGT 973749 36 100.0 30 .................................... AAACCAATAAACATACCGATTGCTGCCAAT 973683 36 100.0 30 .................................... GCAAACGTTAGCCCAGGAAAGCATCATGAA 973617 36 100.0 30 .................................... AAGAGCAAAAAATAACTCTAGCTCTCGTCC 973551 36 100.0 30 .................................... AAGAAACCTCTAAGTTGAGCATTTAATGAT 973485 36 100.0 29 .................................... ATATAGTTTTAAACTTTCTTGACCTTCTG 973420 36 100.0 29 .................................... ACGTTGATGAATATTGTTGATAAACTTTA 973355 36 100.0 30 .................................... CAAGAAGTGAACAAAGTACACGCTGGAAGT 973289 36 100.0 30 .................................... GACAGCAAGATACACGTAGTTGATGAATTG 973223 36 100.0 30 .................................... TAAGAAATCAACGCAGATTTTTAGCCAACA 973157 36 100.0 30 .................................... TAACCCAATAATTACAGTGAAGCACAATAG 973091 36 100.0 29 .................................... CAGGCGTAAGGTATGCTAATTATAACGAT 973026 36 100.0 30 .................................... GCTATCGAACTAATAGCTTAGAGGAACTCA 972960 36 100.0 30 .................................... GTGGAATATTAAGCCCGAATTGTTGCAGCA 972894 36 100.0 30 .................................... TATTGCAATATTTGCGTTTGGGAAACCTTC 972828 36 100.0 30 .................................... CGTCTGTCTAACTGGAAAGTACCGGCTAAT 972762 36 100.0 30 .................................... AAAGAGATGTACCCATCCATTCTAACAGGT 972696 36 100.0 30 .................................... GGGGAGTTGATTTCTTACATCAAAACAATG 972630 36 100.0 30 .................................... CATCAAAGTTGAAAAGGACTACAACAGCCC 972564 36 100.0 30 .................................... CTTAAATTTAGAGCGTGGGATCTTGAATAT 972498 36 100.0 30 .................................... ATATACCGATGGCACATCTGAAACTGGCTG 972432 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAATAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGATAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //