Array 1 37-805 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMG01000001.1 Cutibacterium porci strain WCA-380-WT-3A seq1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 37 29 96.6 32 ............................T ACACGCCGTGAGCCATCGACGCCCCAGCAGTA 98 29 96.6 32 ............................T ATCCCCAAAAAACAGTCTCCGCGGAACAAAAA 159 29 100.0 32 ............................. GATCATCGAGCGCGACGGTGGTCGCTGCACCG 220 29 96.6 32 ............................A TGCTGAGCAGGCCTCAAAATACTGTCCAGTAT 281 29 100.0 32 ............................. AGACGACTACTCATCCAAAGAATCCGCTATTT 342 29 100.0 32 ............................. GGCGGAGCGACGCCAATCAAGTTTCGGGCTGG 403 29 100.0 32 ............................. TATAGAAATAGGCGGGCGGGGTGAATTTGTGG 464 29 100.0 40 ............................. ACACCCAGGTCTCCGCAACCTCGGACGAGTGGACGGCCGT 533 29 96.6 32 ............................T AGCGTTTTTCCCATTCTGGCGCGGAACAGCTA 594 29 96.6 32 ............................C ATGGACCCGGCGTTTGCTGCGGCTCAGCGAAC 655 29 96.6 32 ............................T GACAGGGTTTGTCCTTTGAGGCCCTTGGACGG 716 29 100.0 32 ............................. GGGTTCGGGGAGTGGGGAGCCCGATGTAGGGC 777 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 13 29 98.4 33 GTATTCCCCGCTTATGCGGGGGTGAGCCG # Left flank : GCCTCCGTCTCACCCCACAGCAGCGCCACAACTGCAG # Right flank : GTAGTTGTGCATGGACAGGTTGGCCCGGTTGTAGCGGGGGTCGTGGAGACGAATGTCGGCGAAGGGGACATTGCCGATTGTGGCGTCGAACGTGCCGTCTGGGACGCTCGTGGCGGCGAAGGACTCGGCGCGGATGTTGGCGTCGGGGTACAGTGCTGCGGCAATGGAGGCAGTGGTGGGGTCCAGTTCGACGCCGGTCATTTGTGTACCTGTCGGGGCCAGTCCGATAAAGGTTCCCGATCCGCAACCGGGTTCAAGAACGCGCGAGTCGGTGGGTAGCCCTAACTCGGTCATGGTGTGCCACATCCGTGACGCGATGCGCGGATCGGTGTAGTGGGCGTTGATTGTGGATCGTTTTGCTGCAGCGAAGGCGTTGGAGTCGAGGAGCTCGTGAAGGGTTTCCCGGCGGTGGGCATGATTGGCTCGGCTCTCATCGAAGATGGCTGACATGCCTGAGGCTCCCCAACCTGACCACCGGGCGAGAACATCCTTCTCGTCAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCTTATGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 584094-585403 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMG01000003.1 Cutibacterium porci strain WCA-380-WT-3A seq3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 584094 29 100.0 32 ............................. TCGGCTGGCGCGGTCGGTCAGGCCGAGTTCCA 584155 29 100.0 32 ............................. GAGAGACAGTCTCGTCCATCACTGTCAAAGGC 584216 29 100.0 32 ............................. CAGCGGTTCTGCAGTGGAGTCGAATGCCCAAC 584277 29 100.0 32 ............................. GCCGGAGCAGCCGTAGCCACCGTAGGAGCCGC 584338 29 100.0 32 ............................. TTCGCCCGCGAGACCGACACCACCCAGCACAA 584399 29 100.0 32 ............................. TCGTCAGGCCGTGTCAATCCAGGTTCCCCCTC 584460 29 100.0 32 ............................. CCATCCGCGACGCGCAGCGTAGAGGAGTAGCG 584521 29 100.0 32 ............................. ACCAAAGCCGTCATCCGGGCAGGAGGAGCGAG 584582 29 100.0 32 ............................. GACTCCATCTCCGAGGCATCCAACCTCGAACA 584643 29 100.0 32 ............................. AGAGACAGTCTCGTCCATCACTGTCAAAGGCA 584704 29 100.0 32 ............................. TGTCTGTGCTGGCAGACACCCGGAAGTTCTCC 584765 29 100.0 32 ............................. TTCTTCCTGCTGCTGGTTGGAGTAGGTTTCAG 584826 29 96.6 32 ............................T ATGGTCGACTGCTGTTTCATCCCATTTATCGG 584887 29 96.6 32 ............................T ATTGTTTTCGACGATGGCGCGATTCGTGGCAG 584948 29 96.6 32 ............................T ATCCCCAAAAAACAGTCTCCGCGGAACAAAAA 585009 29 96.6 32 ............................T CCGTCTCACCCCACAGCAGCGCCACAACTGCA 585070 29 96.6 32 ............................T ACACGCCGTGAGCCATCGACGCCCCAGCAGTA 585131 29 96.6 32 ............................T AAATGTGACAGCTTTCTGCATTTTCACTGGCG 585192 29 96.6 32 ............................T ATCCCCAAAAAACAGTCTCCGCGGAACAAAAA 585253 29 96.6 32 ............................T CCGTCTCACCCCACAGCAGCGCCACAACTGCA 585314 29 96.6 32 ............................T ACACGCCGTGAGCCATCGACGCCCCAGCAGTA 585375 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.5 32 GTATTCCCCGCTTATGCGGGGGTGAGCCG # Left flank : AACGCTCCCGGAGACCCCGACGACGGATACGGCTGGGACGTGGTCGACCTGTGGGACGACCGCCAAGGTCTCGTCTCCGGCGGTAAGTCTTGGGGGTAGGCATGGTCGTCCTTGTTCTCACCGCATGTCCTGCTGGTCTGCGCGGCCACTTGACGAGGTGGCTCCTCGAGATCAGCCCGGGAGTGTTCGTCGGCCATGTGCCGGCTCGTATTAGAGACGCACTGTGGGACAGGGTAGTCGAGATGTGCCGCGACGGCCGCGCGATCCTCGTGTACACGGTTCGTGGGGAACAGCACTTCGAGTTCCGAGTTCACCGTCATGACTGGGAAGTTGTTGACTTCGACGGCTTGAAGCTCATGCGACGGCCGAACAGCAAAGCTCGATCCTCGACTCTCCGGCCAGGTTGGAGTTCTGCTGCGCGACGCCGTAAAGTACGTAATCGTTGACGCGAGGCCACTCGCATCTCACTAACGCTCCTGCATCAGCCCTAGCCAGTTGGT # Right flank : A # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCTTATGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //