Array 1 8918-10044 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDBY01000020.1 Escherichia coli strain NAEC1042 NODE_20_length_72717_cov_16.538643, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8918 29 100.0 32 ............................. CATTGAAAACATTGCCTTTATTTTATTTTTTG 8979 29 100.0 32 ............................. GTGCCGCCGCTGGGCACTTCCTTCCCGTGAGT 9040 29 100.0 32 ............................. GCAGGCACGGGCAATATCAGACTCGGTCAAAG 9101 29 100.0 32 ............................. ACAATATCCCGGACCGGGCGCTGATTTAGTCA 9162 29 100.0 32 ............................. TTATACTCTTTTCATCGACTAAGGAGGGGAGG 9223 29 100.0 32 ............................. CAATAACGCAGCATCCAGGAAGCTGTTTCCGC 9284 29 100.0 32 ............................. CGATCGGTGAAGAGGTCCGCGAAATACTCACT 9345 29 100.0 32 ............................. GCGATAGTTGATTCAGCCGCGCCAGCGAATGT 9406 29 100.0 32 ............................. GGGCCGCCGCGAATTTACACACGATTCAATAC 9467 29 100.0 32 ............................. AACTGGTGCGCGACGGCTGGCTAACAAAACGA 9528 29 100.0 32 ............................. TTTCGCGGTTGCGCAGAGCCGCCGCCGAGGCA 9589 29 100.0 32 ............................. CGTGGCTGCGCTGGCCGTTGCAGCAGTTTGAT 9650 29 100.0 32 ............................. CGTAAACGCCCCGTCGCCATTAATTTCGGGGT 9711 29 100.0 32 ............................. TGGGATGAGCAAATAACGTCGTTTCCTAGAAA 9772 29 100.0 32 ............................. CCGCCGTGCCAGTGATCCTCATACGGCCTGTT 9833 29 100.0 32 ............................. AAATTAAGAACGGCGTAAACGACGGCAGCATG 9894 29 100.0 32 ............................. GTGATGATTCAGAGCAGACATTAGCCCGCGCT 9955 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 10016 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTTGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCCTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17462-16945 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDBY01000030.1 Escherichia coli strain NAEC1042 NODE_30_length_58769_cov_16.427009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17461 29 100.0 32 ............................. ACGTAACAAAACAACAGCAAAATATTATCGAC 17400 29 100.0 32 ............................. GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT 17339 29 100.0 32 ............................. GCAATTAATTTAGTTCCAGATGCTGCGAAAGA 17278 29 100.0 32 ............................. TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA 17217 29 100.0 32 ............................. AATGATTGATATAAATCTGTGTACGGTGTCCG 17156 29 93.1 32 .........G..C................ CTAGGATAAATTAAAAGACAAAATTGCAGCAA 17095 29 93.1 32 .........G..G................ GAGCGACCAGTATCAAGATCGACAGGTTTTGC 17034 29 93.1 32 .........G..C................ ATCGATATGTACGTTAGCGAGGGGATCACGCA 16973 29 86.2 0 .........G.AC...............A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.2 32 GAGTTCCCCACGTCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAACCCTTAAACCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGTCAGCGGGGATAAACCG # Alternate repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCACGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //