Array 1 12378-11499 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFP01000273.1 Nocardia abscessus NBRC 100374, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 12377 28 100.0 33 ............................ CTCGGAGAGCTTTCCGGAGTCTCAGCGGCATAC 12316 28 100.0 34 ............................ CAGATAACGAACAATGGTGCGGGCGTACCGTAGA 12254 28 100.0 33 ............................ CTCGTATCACAGACGTCTGACATCAAATCGAGC 12193 28 100.0 33 ............................ CATGAGCCACTCCGCGAACGCCGCCGACAAGCG 12132 28 100.0 33 ............................ CCCGGAAAATCGTCGATCGTCGAATCGGCACAT 12071 28 100.0 33 ............................ CTCCTCATCCGAGCCCGCGCCCGGAAGCGCCGA 12010 28 100.0 33 ............................ CACGGATTTGCCGAATCCTGGTGTGCCGTAAAC 11949 28 100.0 33 ............................ CCAGGCTCGCGCTTGCGGATCGAATTTCTCGGC 11888 28 92.9 33 ..C..........G.............. CTTGCGAGGGGTGGCAGATGACCATCCCGTTCA 11827 28 96.4 31 ...T........................ CGTGCGGTGATCGATGCGCCGCAGCCAGACG 11768 28 82.1 33 .G.TG.T..C.................. GGACTCGGCGTGACCGGCGCGACGACCACGCCG 11707 28 100.0 32 ............................ CCGCGACATAGAACAGCCGGCCCGGCCGACGA 11647 28 100.0 33 ............................ CTGCGCCCAGGTGGAGCACCCGGCGGGAAATCC 11586 28 92.9 32 ............TA.............. CAGGCCCAGCGCCCGGATACCGACCTCACCAA 11526 28 82.1 0 A..........A..T.......GT.... | ========== ====== ====== ====== ============================ ================================== ================== 15 28 96.4 33 GTGCTCCCCGCGCCCGCGGGGATGAGCC # Left flank : AGTGGGACACAGACATTGTCGAGTTGTGGGATCGCAAAGGCAATGTGGCAGGAGGTATCTCCTACGGCGACGAGGACCTGCCGTGGTAGTTCTCGTGCTCAGCGCTTGCCCCGCCGGCCTGCGTGGCCACCTCACCCGCTGGTTCCTCGAAATCAGCCCCGGCGTATTCGTCGGCATCGCCAGCGCACGAGTACGGGAGCTTGCCTGGCAACGCGTCGTGGAACTCTCCAAAGACGGCCGCGCCATCATGATCCACTCCACCAGAGGTGAACAGCGACTCGCCTTCAAAGTCCACCACCACGACTGGCAACCCACCGACTTCGACGGCATCCACCTCATGCGCCGACCACACACCAGCGACGTCAAGCCGGGAGGAGCCCGCGCCGGATGGAGTAAAGCCAGCCGCTACCACCGGGCGGCCAAGAAGCGCACCCTCGACCCGCCGCGCGAAAGTGAATGAAAATCGAGAGGGCTGCCGAAGAACCTGCAGGTCAGGAAGT # Right flank : CATGTCGCGGTCCGTGCCGCGGGATCACAGGTGATGACGCCGTCATCACCTGTCAGTGTGATGCACCTGTTTTGGCTGGTGATGACCATGTCATCAGCTGAGTGGTACATTCCATATTGAAATGTAGCGACACGTCGTGAAACGGCAGTTGAGCGGCGGCGATGTAGCAAGGCCAGCTTCTTGACCAGGCCTTTTGCGCCAAGGCGGCCGAGGGTTCGATTCCCCCAGGCGGCTCCACGTAAAGCCAGGTCACCCGTGGTTTCAGTATCCTGGAACCGCCTCGTTCTCATCTCTGTGGGTCATCACCCTGCTCGATGCGAGTGTCTTCCGGCAACCGGATGAGGTGTTTACGAGCCTTTTGCTCGGCGGCCTCGGCGGCCGCCTCCCAATGAGTGCTGGTGCGCGGTCTGCAGCAGCATCGCGAACAGAACATCTGCCAGCTCCGGGGGCACCCGGCGGCGCCGCGGCGGCAGTGCCCGCTCGCTGGGCACGCTCGACAG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22666-21478 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFP01000273.1 Nocardia abscessus NBRC 100374, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22665 28 100.0 33 ............................ CACCACACCCTCGGGCGGCCCCGACCCGCTGCC 22604 28 100.0 33 ............................ CCGAGCACCATGCGGACTATGTGGGCCAGGACC 22543 28 100.0 33 ............................ TCCGCGTCAGGATCTCGGCAAGACGCACGACGC 22482 28 100.0 33 ............................ CCCCGAGTCCGTCGAGCGGGCGATCCACAACTG 22421 28 100.0 33 ............................ CGGCTATGCCGTAGATGCCCTAGATAGGGACTT 22360 28 100.0 33 ............................ CTTCCCGACCTCGCGAGGGTTCGTAGCCACCCA 22299 28 100.0 33 ............................ CAAATACTGGGTCGACTGGAGCGATGCGAGCTT 22238 28 100.0 33 ............................ CGTAAAGTTTCTTGTTCGTTGGTGGGGCGGCCT 22177 28 100.0 33 ............................ CTCGGCGCCGAGCGAATGCCCAACCACGGTCAC 22116 28 100.0 33 ............................ CTCGCCCCCGTCCGCGCTGGACCGGGGCGAGCT 22055 28 100.0 33 ............................ CCACAGCGCCAGCAGAGTTCACCCGCCGAGTCG 21994 28 100.0 33 ............................ CCCGTCCATCAGCTACGACGGCGCGACCAACAC 21933 28 100.0 33 ............................ CGAGTCGCAACCATGATCATTCAGTTTGATTAG 21872 28 100.0 33 ............................ CCTCGCGTTCGAGCGCGACTGGGCGGTCTGGGA 21811 28 100.0 33 ............................ CAGCTCCTCCATCGTGGGCTGCGTCATGTGGCC 21750 28 100.0 33 ............................ CGCACAGGACGGGGGTCGACACGCCCGACAGAG 21689 28 100.0 33 ............................ CTGAACCAGGGTGTCCAACTCGATCCCAGGTTC 21628 28 96.4 33 ...............T............ CGTGATCGACGAAGCGACCGTGCCGGTGCTCGA G [21607] 21566 27 92.9 32 ...........T.............-.. CGTCCGAGGTTCGGGTTCGTTACGACTTCGGT C [21546] 21506 28 71.4 0 ...TAG...A..T....C......G.A. | C [21483] ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.0 33 GTGCTCCCCGCGCCTGCGGGGATGAGCC # Left flank : CCCGGCGGCTGCCAGCAGTCCCAAGTAGTCGCTCAACGCTCCGAAATCCACCGCACCAGAGGCCCGAAACGGAGTCACCACCGCCACAATCACAGAACTCGCCATCCCTCGATTCAACCGCCCACAGCAAGCCTGAGGCGCTTGCCTCGACGACAGGCCACGATGTGACGTGGTCAGATGCGGCGATTCCGGCACCTGGCGGAGGTGAATACGGCGCTGGACCCCATTCCGGCGTGCGCCTGCAGGGCCGGCAGCGCACACGGACTCTCGCTCGTCTTGGGTTGTACGCGGACGACCGAGCGTGCGACTTTTCGAAGGATGGTAGACATTCGAACTCGGCGAGAAGTGTCCGATCCGCAGCTGCTTGGACGGCAAAATAAATGCAGCGAACCGCACGATCGGTGCAAGGCCATCAAACGAGTCTGGATCGGAGCAGTCGATCGCTCACAAAAGTGAATGAAAACCAGCTCGCCCAGCAGAGAACATGCTGGTCAACAAGT # Right flank : GGCGACCGAGCCGTGTGGCTCGGCCGCTACCTTGCGTGCTGCTGGCTGAGGACCCTTTGTGGATAGCGAAAATGTTTGAAACGCAGCATAAGTGGGTAAGGACTGCTACCTTCGATGCGCGGACAGCCTGGCGTCGAAGTTGGGGCGCGAAGTTGTCGGTGTGGGGCTATATCGTTCGGCGCGTACGAGGGTCTGATCGTTATGGGGGCATGGTGCTGAGTAGGGCGACGTTGTCGGCCTGGGCCAAGAGTGACCGTGATGGTGGAAGCCTTTCTCTTGTCAGGCACCTGGCTGATTCTGCTGAGGTTGCGAAGTTGGTGTGGGATCACTGGTTGCCGCGGCATACGCGGGAGGTGATCTGTGATGGGCTTCCGGCTGGTGAGGCTGATGGGCGGTTGCTGCTGTGTTGGCTGGCGGGTGTGCATGATCTCGGGAAGCTGACGCCGGCGTTCGCGTGTCAGGTGCCGGGGTTGGCGGATGCCATGCACGCCAAGGGTTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 24996-23955 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFP01000273.1 Nocardia abscessus NBRC 100374, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================== ================== 24995 28 92.9 33 ..............C..........T.. GAAGTCCTCGAAGAACCGGCCGATGCCGTCGAT 24934 28 92.9 33 ..............C..........T.. CAAACGCGGACTGACGCAGGGCATGCTGGCGGA 24873 28 96.4 33 .........................T.. TCGCTCGTACAGGGCGTCCACGTCTTTCCATGC 24812 28 89.3 90 ............T.C..........T.. GCGTCGAGCAGCTTGGTCCTCAAGTCCTCTTGGGCCGACGCCCTTAATGCCAGATCAGGCATCTTTCCGGTACTTCCGAGCCGATTCCGA 24694 28 75.0 33 ..TG..GT.....A.CA........... CATCCAGCAGCTACGGAAGCGGCAAGGGTTCAC TG [24681] 24631 28 100.0 33 ............................ CCCAAAAAGGAGCACTCCCTCATGTCCGCAACC 24570 28 100.0 33 ............................ CACACCATCGACGGCGTACGACTGTGCCGCTGA 24509 28 100.0 33 ............................ CGCCGCGCCCACTAGTCTTGATCGGCAGGCATA 24448 28 96.4 33 ........T................... CTCGTGGTAGGCGCGCGGATCGCAGATGAGGTC 24387 28 100.0 33 ............................ CTGCACGCACGTGTACGGCCAGGCCAAGGGTTG 24326 28 100.0 33 ............................ CTACGCGAGCGAAGATCCGCGCCAGGACGAGCC 24265 28 100.0 33 ............................ CCGGGCCTCGCTGGGATCGAACTGGACCACCCG 24204 28 100.0 33 ............................ CTCTCGCTCGGCGCGGCGGGAGTCTTTCGTGGT 24143 27 75.0 11 ..............C..CC..CC.-T.. TTGACCGCATA A,A [24127,24131] Deletion [24106] 24103 28 96.4 32 .................T.......... CAGGATCCGGTAGTGCACGGGCGGGGACGGTA 24043 28 96.4 33 .............A.............. CGGCACCAGCGCGGCATAGATGCGGCCACGTAC 23982 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================================================================== ================== 17 28 94.7 35 GTGCTCCCCGCGCCTGCGGGGATGAGCC # Left flank : GCCGTTGAAGATCGCCAGCCTGATCACCCCGGAAGTCGCGGTGCGTATGGCCGATGGCATCCGTGGGCAACGCTGGGTGTTGAGCTGGCTGCCGCAGCGGGTGTTGACCCGCCAGCAGGCGTTCAGCGGCATGGTTCTCGACGAGATCCTGACCGACCCAGACGATCTCGACAGCGCCACGATGATGCTTCTTCTGACTGAACTTGCCGCGGACCTCGCGATGCCGCTCGAGGAGGTCCTGTTCCGTCTGTCTCATGTCAAGAAGGACGAGAACTACCCGCGATACCGCTGGAGCCGGTGTACACGGCCTTTGGGCAGCCGCGTGGTTGACCAGGCTCTAATGCGAAAGGCGGAATAGCGTAGATGGGACTGCCTGGTTCAGACCGAGAGGCGTAAGTAACGGCGAACTGTCGGCGACCGCCGCCTACGACTCCGCTGTTGGCGGAACTCGTGGGGCTTGTTACGTAGGTGAGTGAACGATCCCGGCGAGCAGAGGTACC # Right flank : CTGCGGTGTCAGATGGGTGGGGGCTAAAAGCGGCGGACGAGCATCCGAGACCGGATCACCGCCGGACTGGTATCGAGCCACACTGTCACCACCGGCACCGCTTCCGTCACGCCCGTAGAGGCGCGCAGATAGTGATCCAACCGCATCTCGCGCGCGGCGACGTCACGGATCGTCGACAGGAACGGTGCGTCCAGCACGATGGGGAAGGCCGCCGCGAGGGTGAGGCCGGTCCGGATGAGTCCGTCGTAGATCCCTGGGGCGACGAGCGACCGGTAGGTGTCGGAGTCGCGGTCGAACCGGTCACCGGTCAATCTTCCCATCACCGATTCCTCGAGTAACGGCGCGAACCGGTCCTTGTCCAGCACCGCCGTACCTAGAACGCGCGCCAGAAAGTCCGCGGCCGTCGATTTTCCCGACGCCGGAAACCCACACACAACAACCACACCACAGCTACCCAGTCCGCCGACCGCGTCGCGCAACACCTCCCGCTGCGACTCGGT # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.38, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2100-2250 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAFP01000259.1 Nocardia abscessus NBRC 100374, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2100 29 100.0 32 ............................. TCCCCGACCGTCCCGGTACGTCCCGGCCCGGT 2161 29 100.0 32 ............................. CGCTTTCGTACTTGAGCCGCCGACCGATCCCG 2222 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGCTCCCCGCACCCGCGGGGATGATCCG # Left flank : GACGAACGCGGCGCGGATGATGGGCGTGATCTGATCCGGGTGGGGTGGAGTGAGGCTGGCGATCAACTCCTCCACACTCACCGCGGCTGGCGTTTGACCGGTCGGCTCTAACTCATCGACGGCGTGGGTGTCGTAGCTGGGAACGGGGTGCCTGCCAGTGCTGGTGGAATATTCAACAGGGTTGGTTGGCCGATTCTCCATGCAGTACCTCCCGGATCACTTGTGCTTGCAGGATGGTGAGGTGGCAGTCTTACGCGCCGCCGAGGTGGTTGATGGTGTCAGTGACGGTCAGGCGTCGACCTCGGTGACTGCGTGCGTGTGGTTCCGCTTGTGAGGTGTCTGTGGGTTTGCTGTTCATGCTCGGTGCAATGTGGGTGCTGATGCAACGGCATTTGTCGGTAGTCGGGGCTGGACTGCGGAGCCCGGCATTAGGCATCTTGCCGGATGTCAAACCGATTGAAGATCGGCCGCTCTGGCAAAATACTTGCTGGTCAAAAAGT # Right flank : GATTTCTGTCGCCACATCAACTGCTTCGCGCGGGTGCTCCCCCCCAAGACCGACAACGGCTGGCGGCGCATCCTGCTGCCCGCCCACACCGTCGAGGCCGTCCGAGAGGCCGTCAAGGACCTGGAAGTCGGCGACCGCCCCAACCCGATGGGACTGCTGTTCCCGGCCCGCAACGGGTCGCTGCGCAACCCGAACAACTTCGGCCGCACCTGCGTGCAGCACGCGGGGAGAACTTCGCCTGGGTGACCCCGCGCACGTTCCGCAAAGGCGCGGCCACCGCGGTCGACCACGCCTACGGCGACCCCGAACGCGCCGCCCGCCAGCTCGGCAACACCCGCGCGGTGGCCAAGGCGCACTACATCGACGTCCCGGAGACCGTTCCGGACAATCGAGACGTGCTCGAGCGGTGGGCTCGGGGCTCCACCGGCCCGAAAACGTGAGATTTCTGTGAGAACCGCTCGAATCCGAGCCCGTCACCGGAACGAGAAAACCCCTTCCGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACCCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //