Array 1 9-898 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVBL01000156.1 Rothia mucilaginosa strain 574_RMUC 425_905_18297_242+,80_,356+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 100.0 34 .................................... CTGTGGGTGTGTACGTGTCCGCGTCAGAGGACGT 79 36 100.0 36 .................................... CTTTGTTGAAAATGCGTTCGACCCGTTCCTGAAGCA 151 36 100.0 35 .................................... GGCTCCGCTAGATGGTGTCTACGGCGTGTTGTTCA 222 36 100.0 34 .................................... CATGAGAAGGCGAATGCGGCCACGGAGCGTTTGA 292 36 100.0 39 .................................... GCTACCCCGTGGCTCATCTATGCAGGTATTGCCGCCGCC 367 36 100.0 35 .................................... TCTGGCCGTCCACACCCCAATGGTGAATCACGATA 438 36 100.0 33 .................................... ACTGAACAACGAACAAAAACAGTTCTACCAATG 507 36 100.0 33 .................................... CCTTCTACATTTGGAGTTATTCATATGGCTAAC 576 36 100.0 35 .................................... TAACGCTCTGTTCGCGCGGGTCTACCTCTAGAAGA 647 36 100.0 38 .................................... TGTACGATTTCACGGCGGGGAAAGCCGTGTTTATCGCT 721 36 100.0 35 .................................... GTCGCAATATCCATGAGGTGATAAACCGACTCCAG 792 36 97.2 35 ...................................A TGGGTTTACGCTCCGCATATATGCTAGAATTAATG 863 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 13 36 99.8 35 GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT # Left flank : TCACGATAG # Right flank : GCTACCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [8.3-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 2-474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVBL01000090.1 Rothia mucilaginosa strain 574_RMUC 260_474_8990, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2 36 100.0 39 .................................... GCTACCCTCACCTCATCCGCGCGCCCTACCCCTAATTTC 77 36 100.0 38 .................................... TCGCTGACCGGTGACGAAACCGCCCGAACTCGCGTCAT 151 36 100.0 37 .................................... ACACGCCGATAGCATCCAGCCGGCGGCGGCCCTCATA 224 36 100.0 34 .................................... CCATGGGAAATCACGCACACTGAAGGCGTTCAGC 294 36 100.0 36 .................................... TAAGCAGGAATGGGGTCTTTAGTGGTGGTGTTTTCG 366 36 100.0 38 .................................... TTTTTAGCACTATTTATGAGGTCATCATCATCACGATA 440 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 99.6 37 GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT # Left flank : GG # Right flank : | # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 4343-3705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVBL01000117.1 Rothia mucilaginosa strain 574_RMUC 336_6993_195556, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4342 28 100.0 33 ............................ CCAGCACGGGCGGATATACTGCCACTTATTGCT 4281 28 100.0 33 ............................ CTTGGAAGTCCAGGGGCTTTTACAAACCACAGA 4220 28 100.0 33 ............................ CTTTACCCCTGGACTCACCCCGAGACTGGACAA 4159 28 100.0 33 ............................ CACCTCTTCGGTCATGTACTCACTCAGGTTCTC 4098 28 100.0 33 ............................ CGTCTCCAGAACGACGATTCACCGATTAACGAC 4037 28 96.4 33 .C.......................... CGCGGCGACACCACCTCCACGCTGTACGGTGGC 3976 28 96.4 33 .C.......................... CCTCAACCACCTCAGACCCCTTCGGCTCTGCAG 3915 28 96.4 33 .C.......................... CCGCCTACTCTTACCTCTGATGAGGCACGGTTA 3854 28 96.4 33 .C.......................... CGACGGGTTCGGCGGTGGCGAAGGCATCCGGCA 3793 28 89.3 33 .C...................A.....C CCTTCTCCTCGCCGCCGACAATAACCTTGGGCA 3732 28 71.4 0 ..T..........AT......AC.T.TG | ========== ====== ====== ====== ============================ ================================= ================== 11 28 95.1 33 GTGTTCCCCGTATGCGCGGGGGTGAGCT # Left flank : CAGAAAGCCGGACTCAACCGGTCCATTCTGGATGCCGCTTTTAGTACGCTGCGCCGCCAGCTGGAATACAAGGCCAGCTGGTACGGCTCGCAGGTACAGATTATTGACCGCTTCTTTGCATCCTCTCAGACGTGTAGCGCCTGCGGAGCACGAGCGAAAACCAAGCTCGACCTTCGCGTGCGTGTCTTTGAGTGCGCGGCCTGCGGTGTGCGGATTGATCGTGACGTGAATGCGGCACGTAATATTCGTGCGGAGGCTGTGCGGATGTATGAGGCGCAACTCGCCCCCGGCATGGGGGAGAGTCTAAACGGACGCGGAGTTACTGACTCTGATGCTGCTGTTTCGGTGGTGTTGGGGGATGCGGCGTTGGATGCGTCAAGACCAGCCGCCATGGGCGGCGGGTCACCGTAGGCAAGTAATTGTCTACTCATCCCCTTATATACGTGTGGAAAGTGAATAGTTTTTAGACTTCTGCTAGGCATCATGCCTTGTGGTTATGT # Right flank : TGGGGATGAGCCCGACAGACACGCTTATATGTTGGATTTTGGTCAAATTATTGTATATTTGTCCTGTACCCAATTTCCGTGCATGCCCGAGAAAGCAGCATCTCAGCCGACGTTGGCTGTTCATTATAGACTGCATCACACAGTGCTTACATCGAATTTGGCTCGAGTTGTGAAGTCAATGGGGGATCTTCAAGAGGCGGAGCGACTGTTCAGAGAGGCCATCGCGATGGACCCAGAGTTCGCCGAATACCACCAGGATTTCGCGTCGTTCTTGAGCGATATGGGCTGTTTTTGAGGAAGCAGCGGTAGAGGCAGGACGCACGGTTGAGCTCGATCCGAGCATAGATGTTCAGGTAGCTCTCAACGACCTCCAAGCCCGTTTTCCGAACGACGAACTTATTAACGAAGCCGTACATCTGAACTCGAATACCGAATGACTGGAAACATAATGGTGAGTAATCACAAGCGACGGGGCGAAACACAGAGCGCTGCTCCTTGCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCGCGGGGGTGAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCATGCGCGGGGGTGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.10,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //