Array 1 1399283-1398223 **** Predicted by CRISPRDetect 2.4 *** >NC_013714.1 Bifidobacterium dentium Bd1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 1399282 36 100.0 28 .................................... GAAATACGTCTACGAGCGGTTCCGTTTC 1399218 36 100.0 28 .................................... GCATCGAAAGCCTCTGCGAAGACATTCG 1399154 36 100.0 28 .................................... GCGCCCCGACCATCCCGACACGAAAGCC 1399090 36 100.0 28 .................................... CTTATCGCCGGATTGTTGCGCGGCGAGA 1399026 36 100.0 28 .................................... AGTCCTTGCCATTATGGTCGGCTGGCAC 1398962 36 100.0 28 .................................... GCTTCGCGACTGTGGAGCGGGTTGCGGA 1398898 36 100.0 28 .................................... CGTGTCGGACGTGGACGGCGTGCTCTAC 1398834 36 100.0 28 .................................... CTTGTCGGCGTGTTCGCCACGGCTCCGA 1398770 36 100.0 28 .................................... TTGCGAGCAGTGCAATGCACGTCGTCTC 1398706 36 100.0 28 .................................... TTTCCCGGCATCTTTCCTCTCGTGGTTG 1398642 36 100.0 28 .................................... GGCGACGTACACTTCCTTGGCGCACATG 1398578 36 100.0 28 .................................... TGTTTTTCCACATCACGCCTTTGCGGCA 1398514 36 100.0 28 .................................... ACGAATTCCTTGAAAACCTGATCCGCGC 1398450 36 100.0 28 .................................... CGCAGGAACTGTATTCGCTCGTATACCA 1398386 36 100.0 28 .................................... AATGGTACGTCCGTTAATGTCTTCCGAT 1398322 36 100.0 28 .................................... TCAACCCGGATAATGAGTCGTTGCCGTT 1398258 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 17 36 100.0 28 CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Left flank : AGTTCGACTCATCTGGCCTGACGATACCAAGTTCAATAAGCGATTTCGCACAACAATTTGGCTTGTATTGCGAGAAGAAGATCGATGCATTGGAAGTGCCAGAATATCGAGGCCCTTATGAAAAAGGATGAGGACAGTGATGGCATGTGGTGTCTGGTGATGTTCGATCTGCCGGTGAAAACGAGACGGCAACGACGAGAGGCGACAGAGTTCAGAAACATGCTTTTAGGCATGGGCTACAGCATGGTGCAGTATTCCGTATACTCAAGATATACGCCGACCCAATCAGGCAATAGATCGACGGTGATCGCAATAAAAGAGAATCTTCCTCCTGATGGTATTGTTCGAATTCTCCATGTCAGCGATCATCAATGGTCGACCGCATTGCGTTTTTCCAGTTCTAAACAGGTGGAGACTAATGAAACGCCGGACTATTTCACACTTTTTTGAACAGAAGAACCTAATTGAAAGGCGGAGAATGGCCCTTCTTGACAAACATA # Right flank : ACATCGACGAGTTGGGGACCGAGCTCTCCAAGTTTATCCACTATCCCAAGGAGATACGAGCTAATGGAACGCACAGTCACATTTGAAGATGAGGAGTCCGTCAGGGCCTTTTTATTGGTGTCATCATCGGTTACGTCATCATGTCTGTGATTCTGCATCCATTGCATGCGCTGTACTGGATTTCGAGGATCGCAGGCGTCTGCTGCATGTTTTACGGTGTCGGGTCATCCGTGTATCCGGCAAAGGGATTCGATTTCCTCATTCTCGGCGTGGCATCATTCTACATTCCAAAAGGCTGGATTCTCCATGGCATCCCCGTTCGAAGATGCCATGCGGCTTCTCGCCTTTTAATCGGCATTCAGGAAAGATGCGTATCTTCCCAGCGCGGACAGGAGATGGTCCTTCCTCGTTCGTTTCGGATCGATGACGGGCATTCCCTCTCGAATCCGGCTGTAAATGGGTGAGAATGCGTCGTATGTGTCATATGAGAACACGGTCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTTTATCAAGAAGGGTAGAAGCTAATTCCCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 1836768-1831391 **** Predicted by CRISPRDetect 2.4 *** >NC_013714.1 Bifidobacterium dentium Bd1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1836767 33 100.0 33 ................................. AAGTCGTTGTTCATGTGGACACGCCAATATCCG 1836701 33 100.0 35 ................................. GCAGAAGGTCACGATGGATGATGCAACGTTTTACA 1836633 33 100.0 33 ................................. CTTAACCGTACTCCGGCCGCGGCTGGCGGACAG 1836567 33 100.0 33 ................................. GAGAAAAGGACTAAACAATGGCTACCGTATACA 1836501 33 100.0 33 ................................. ATGACACTTCCACCGCCCGTACCATGACGGGAA 1836435 33 100.0 34 ................................. CTGCAAATGACGAACGTGCTGTCGGATGAAGCGT 1836368 33 100.0 33 ................................. GTCCTCGACCGCGACCATGCCCGAATCGTTTGG 1836302 33 100.0 34 ................................. ATTTATTTGCGCCGCACCGACGTGGAACAGCACC 1836235 33 100.0 35 ................................. AAGGATTGAGGTGAGCTCGATGAGGCAAATGCCGC 1836167 33 100.0 33 ................................. TCGGGGAAGCGGTACGAGCCACGGTGCGCGTGG 1836101 33 100.0 33 ................................. CATTCGATGCCGATAGGGTGCCCTGAGTCTGCC 1836035 33 100.0 34 ................................. ATAAAGTCCCTGTAAGTGATGGAGGACACGTTAG 1835968 33 100.0 33 ................................. TCGGAGGAGCTGCTCGTAGTAGTCTTCGAATCC 1835902 33 100.0 34 ................................. TCTCTGCAGCACGCGCATATTCGTGGATCAGCCG 1835835 33 100.0 35 ................................. AACGACGGCAGCTCGCACGTGGAATGGATCACCGA 1835767 33 100.0 34 ................................. TTGTCCGGCGACATCGGCGGCGGCATCAGCGCCA 1835700 33 100.0 34 ................................. ATCCAGACATGCGATTATGTCAATGCCCACACCA 1835633 33 100.0 34 ................................. CGCTTTGAATGGCAGGTTCGGGATGCCGAGTCCG 1835566 33 100.0 34 ................................. CAAGTCATCCAGCGTTTTGCCAATACGCTCGAAT 1835499 33 100.0 34 ................................. TACAAGCATAGGGGGTCTATCACCCCTAATCCGT 1835432 33 100.0 32 ................................. CAGCTCGGCGACGCGGACGGCCAGATGCTCAT 1835367 33 100.0 34 ................................. CCCGATTGGGAGATGAGGATCCGTGGCCGCGTCA 1835300 33 100.0 34 ................................. TCCGGCCCCCAGCCGAGCTCTTCCCACGCCATTT 1835233 33 100.0 34 ................................. TCACCCCGGTAGGCCCAGTCGATGGGCAGTTCCC 1835166 33 97.0 35 .............G................... ACTGCGACGGCTTGCGCTTGCATGCACAGTAACCC 1835098 33 100.0 34 ................................. GATTGCCTTGTGTTGGCATTCGTCGTTGGATGAT 1835031 33 100.0 34 ................................. CATTAAGAGTGAAGTTGCCAAGACGTATGCGACC 1834964 33 100.0 34 ................................. GACATGCTGGGCCATGATATAACCGCCTTAAAAA 1834897 33 100.0 34 ................................. ACATCCACGAGCAACTGGCGCGTCGTATATAAAA 1834830 33 100.0 35 ................................. TGGTCGGCGGTCATCATCAGTCTTATCGGCGGTGG 1834762 33 100.0 33 ................................. GGCGTGTACGCCGTCAGATAGGCCGTCGCACCC 1834696 33 100.0 33 ................................. ACAAACCCATTGCCGAAACTGCTCAACACGACA 1834630 33 100.0 35 ................................. ATGATTTGGAGCCTAAAAAATCAAAAGTATTGTAC 1834562 33 100.0 33 ................................. GATGTGAAATTCGACGTGGACCGGACCAGCTTC 1834496 33 100.0 33 ................................. GCAACCTTACGCGCCGCCATCATGTGCAGTCGA 1834430 33 100.0 34 ................................. GCCTCACGCGAACGAATAGCATCGGCGGAGGCCG 1834363 33 100.0 33 ................................. ACCAAATACGTGTTTAAGGTGCAAGATGATTGC 1834297 33 100.0 34 ................................. CCGTCACCGATGCGGAAGTGGAAGCCTCCGCCAA 1834230 33 100.0 34 ................................. TTCTTTCTTATTACTACTACTCCTACTACTACTA 1834163 33 100.0 34 ................................. ACCATGCGTTTGCAGTCCTGCTTGCGCTTGTAGA 1834096 33 100.0 33 ................................. AAATGCCGGTATCTGCCCGGGATATGGAAGTTG 1834030 33 100.0 34 ................................. CTGGTGCCGTCAATCGGATTGACCGGCGAATTGG 1833963 33 100.0 35 ................................. ACCTTATCGTAGGCTACGGGGTCGTTGATCAGCCA 1833895 33 100.0 33 ................................. CTGCTGGCCATATGCCTGGAATCGCGTGGGTTG 1833829 33 100.0 34 ................................. CTCGATTTCGGTTTGCATGTGGGTCAGGATCCGG 1833762 33 100.0 34 ................................. CTCAACAGGCTGACCATGGCGTCGGTGGTCGCGT 1833695 33 100.0 33 ................................. TCATACCGTGATACGCTTACCGTACTCGGCTAC 1833629 33 100.0 33 ................................. GTTGAGCGTCCGTAACGCCATGGTCGCCTCCCC 1833563 33 100.0 36 ................................. ACTGCTTGCGGTGGCTGTCGAGTCTTGCGTGGTGGC 1833494 33 100.0 34 ................................. GCCTTGACCTCACGCGACATGAAATCGGCGTAGG 1833427 33 100.0 33 ................................. ACCAACGAACAGGTGAGCGCGACCCTGTTCGCC 1833361 33 100.0 34 ................................. CAGGATGGATGTCAATTCGATGAGGCAGATGCCG 1833294 33 100.0 34 ................................. CAACCATTTGCGGAACGTTGGTCATATTATCCCC 1833227 33 100.0 34 ................................. TTATGAAAGGTGTGAACATGAGCAGACGGAACAA 1833160 33 100.0 34 ................................. GGGTGCGGCGAATGCGATCGGTGCGGCCGCCACC 1833093 33 100.0 34 ................................. CTATCCGCAAATCGGCTCGAAAGAGTGCGTACCC 1833026 33 100.0 33 ................................. GCGCATGGTGCGGCCCAGGTAAAAGACGAACAT 1832960 33 100.0 34 ................................. GTGGACGGCTCGGGCGCTGATGTCCACAAGCTGG 1832893 33 100.0 33 ................................. TGGTTGGTCTTGCGTCTGCGTCGAGTCCACGTC 1832827 33 100.0 33 ................................. CTCCGGACAGGTCGAACTACGGAGATACATTTC 1832761 33 100.0 35 ................................. AATAACTGATGCCGGACAGTGGCTCGTTGTCGCCG 1832693 33 100.0 35 ................................. ATTGGCCAGCACGAACCTTTCGAACCAGCAGACCA 1832625 33 100.0 35 ................................. AAGCCAAAATAGTCGGCAAACCACCATACGGTTAT 1832557 33 100.0 34 ................................. TCCGTCGAGAGTGTTCCGTGATCAGGTCGGCGTG 1832490 33 100.0 34 ................................. ATGGCAAAGTCCCTGCATGCGCGTCTCGTGGCCT 1832423 33 100.0 33 ................................. ACGTAATCGCACGTCTGGACGAAATAATACCAA 1832357 33 100.0 33 ................................. GCTTTCGCGCCGACGGTCAAGATCACCCGCAAA 1832291 33 100.0 33 ................................. TACACGGCAAGCGTCGGCATCCGCGGCGTATCA 1832225 33 100.0 33 ................................. ACGTGATGACGCAGGTCGCAGTCGATGACATGC 1832159 33 100.0 33 ................................. GACAAGGACGGGTATTCGCCGCCATCAGGCGGC 1832093 33 100.0 34 ................................. CTCACCGGCGTCAACGGCACGGGGAGCAAGACAT 1832026 33 100.0 33 ................................. CTGTCCGGCGACATCGGCGGAGGCATCAGCGCC 1831960 33 100.0 33 ................................. CGATTTGGAACGTGAGATAGCGGAGAACATCAC 1831894 33 100.0 35 ................................. TCATGTTCCATTGCCCTGAGGTTGAGGATAGCCCA 1831826 33 100.0 35 ................................. ATGAGCCGTGAAGTCAAGGCGAAAGTGCATGGAGG 1831758 33 100.0 34 ................................. ATGCACGCGCACACCGACATCCGCAGGGAGCAAT T [1831730] 1831690 33 100.0 33 ................................. ACCGACGTGGCATGCGGCAACGACTACACTCTT 1831624 33 97.0 34 ......T.......................... TTCCGATCGAAGAGTCCGCTGTCGTTCTCGGCGA 1831557 33 100.0 35 ................................. GAGGACAGCCTGGAGGGCTGCTACGCGCTCATGCA 1831489 33 100.0 34 ................................. ACGCCGAGCTCCCGGTCCCCCGTCGGCCCTGGTG 1831422 32 84.8 0 ....................T.A.-...A...C | ========== ====== ====== ====== ================================= ==================================== ================== 81 33 99.7 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGGAAGAGACGGTTGCGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCGGTCACTTCATCGGATTATCTAACTTTAGTAAATGAAGTGATGAAAATCATGGATCAAGAAAAGGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGCTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTTGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : ATGATGGGAGCGGCCATGGGATTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGCTCCAGTTGGATGCGTTGACCGGTATCGCCTACACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCTCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCGTGGCGTGGCGGCGTGTCAGCCGGCGTGACCGGGTTGAGGAGGATTCGTAGGGAACGGCATTTGACGCAGCGGATGCTGTCAGCCTTGACGGGTATCCCCCAGCCTAATATTTCTTGGTTCGAGACCGGGTATCGTCCTGTGTCTCAAATGTATTTGGATACTGCGCGACGCCTGTCGGAGGCGTTGCAATGTGACCCTGTTGATTTTCTTATTGATTGAAAGGATATTGTGATGAAGGCTGAGGTTGTTATTGTTTCACGGTTGGAGCGCCATGGCGGGACGATGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //