Array 1 27822-27522 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODF01000032.1 Listeria floridensis FSL S10-1187 c29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27821 36 100.0 29 .................................... TCTCCATTCATTCTTTTTGTTGTACCCTG 27756 36 100.0 30 .................................... TTTACCTTTTGGTATTCCATCTTTTAATAC 27690 36 100.0 30 .................................... CTAATTTTATTGTAGCGCACGAGACCGCTA 27624 36 100.0 30 .................................... GATCTTCTTTTATTCGATAGATAGTTGGGC 27558 36 86.1 0 ..........................A.C..C..TA | A [27526] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTTGTACTCTTAAAGATTTAGTAGCAGTAAAAC # Left flank : TGCATAAAAGCATTGACAAAAGAGGGAAATAACCATAAAAATAATATTTGGCTGTTGAAAAATAAGCCAATTTGTCCTGATAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTCGGTCGGGGGTTCGAATCCCTCTCAGGACGCTCATTTAAAGAGTACACTATTACCTAACTGGGCAGAAATGGGGCAGAGAATCCTAAAAAGGGTTTTTAAACTCATTCGCTGCTTTCATATCAGTTTCTTGTAAGAGATGACTGTATATGTCCGCGGTGGTAGTGTATTTTTTATGTCTTAATCTCTCTTGTACGATTTTACTATTTTTAAACCTTGTTTGAAAAGGAGTTATATCTAGATTACATTGGCTGGAAAATTTGTTAAATTAAGTGATGGATAGTATTGAAAAAGTTAATCCGATTATTAGAAAAGACAAAAATAGCATTTTATGCTAGAATGTTGCTATAGAGCCAATCCTTAATTTAAAGACGTTTATTTTGAG # Right flank : GTTGACCTCGCCTTTAGGCGAGGTCATTTTTTATGCAATAAACAGAAAATTTCACATATAGGTTGATGAGGTTATGATATATTGGATATAGTATTGCATACAAATTTAGGTGACGGGATGAAAAAGATGTGGCTAATATTACTTGGACTTATACTACTACTTAGAATCGGAATTGGAAAGAAAAATATATGGACAATAAAAAGGAACTAGAAAAGTTAGAGGCTAAAAAGCAATCCGCTGAGCTATTAAAAAAAGAAATTTTTCGATATAAAAAAAGTGGAAATAGAGAGCACTGGGTATAATAAAATGGCAGGTTTTTATCGAATGGTTGTGAAGATGACAAATGATAAAAATAAAACTGCTCGTTTTGATTATGGCTATGTAAAAAAACAAAACGAATTATCTACCATAGGATTAGTTGATGAAGAGGTTCAAGAGAAGGGGATTACAACCAATAAAATCAAAGTCATCTATTCAAATGGTAAAGAGGAGGAATTTTG # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTTAAAGATTTAGTAGCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 40142-40814 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODF01000026.1 Listeria floridensis FSL S10-1187 c23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================= ================== 40142 36 100.0 30 .................................... AATCCGAGGAAAAAATAAAACAGGGTAAAC 40208 36 100.0 30 .................................... AAGCAGGCCGGACATTCAAAGGAACGTTTG 40274 36 100.0 30 .................................... GACTTATTGAACAAGTTGGCAAGCGGTAAG 40340 36 100.0 30 .................................... AATTCAATAGTATCATTATCATAGTAATCA 40406 36 100.0 30 .................................... AATTCAATAGTATCATTATCATAGTAATCA 40472 36 100.0 30 .................................... AGAACAACAGAAGAATCAATCAAAAACGGG 40538 36 100.0 30 .................................... TTAGTTCGAAAAATAAGACTTTCGAGCTTA 40604 36 97.2 31 .........................T.......... TTCTGAATTAGAAATTATTGATAGATATGAA 40671 36 94.4 71 ..................................CT CTTTATGATTAAGGCAGATACTTTTCTTAGTTTTTTCAACAAAGTTAACGCTCTTTACTAGGGGTAGTTGT 40778 36 86.1 0 ...........T..T.C............A.....T | T [40797] ========== ====== ====== ====== ==================================== ======================================================================= ================== 10 36 97.8 35 GTTTTTGTACTCTTAAAGATTTAGTAGCAGTAAAAC # Left flank : GGAAGATCGCGGAGAAATGATTTGTGCGGTGAAAGACGAAGTGGTTCAAGCAGATGTTGCTCCTTTTGAATTGATTGATTTCCCAGGTGGATTGTATGCCATGGCCGTTAGTATTGATGAAGATGATGAAAGTATTGAAAAAGTACATAAAAAAATCCATAAGTGGCTTGAAACCACTAATTTTGAACTCGATGATACCCGTAGCTTCATGTTCAATATGCCTTACCTCGACGAAGAAAATCTTCACCAGCAAGATATTGAGAAGGGACTGGGTTATAGGCAAATGCAGCGGTATGTCCCTATCAAGCTGAAAGAAGACTAACAAATTTGTACGTTTTTCAAAACTATGGGGAGAATCGTTAGAACAAGGCACGAAATATTTTATCCTGGTTGCAAATGGAGAAAAATGAACCATCTGATTATTAGAAAAGACAAAATGGGATTTTATGCTAGAATATTGCTATAGAGCCAAATCTCAATCTAAAGACGTTTATTTTGAG # Right flank : TCAGTTTGTCCTTTGGTTCGGTCTAAATGGTTGAATGAATTCCTAGGGCAAAAGAGATGGTGGAAATATGCAACCATCTCTTTTTTATGTTTATCACGATAAAAAAAACCGCCTCCCCTAGACGGGAAAGCGGTTTTCGATTGTTTCATTTCAGCTGTTATTTCTTCTTCTCTACTAAACGGAAATGCTGCCAAGGGCGAATTGTTTCAAGTAAATAGCGTTCTTCTGGAACGATACGTGCAACAACGTTTGTATTGCCGGAATTTTCCATTGCTTGAAGTGCTACTTGCATTTCGCCTTTATAGCGCTCATAGCCGTTGTTATCAATTGTCACATCTCCAAGTTCAAGCGAAACTGTATCATGCGGCGCGAAATCAAATTGTTTGTAATTAACACGCGTCATCGTCGAACGAACGACATAGGCCGATACGTCACCGCGATTGAAGTGTTTTTGTGTCAAGACGATTTCTTTCTCAACGTCCGTCGTTCCTTCCAAAAAC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTTAAAGATTTAGTAGCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 411-567 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODF01000038.1 Listeria floridensis FSL S10-1187 c35, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 411 26 100.0 39 .......................... ACCGCTCAGCTTCATCTCGAGCCGCTTCAGTTTTACTGC 476 26 100.0 40 .......................... CGCCAGCAGGATTATAAAGTTCAAAATGCGGTTTTACTGC 542 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ======================================== ================== 3 26 100.0 40 TACTAAATCTTTAAGAGTACAAAAAC # Left flank : GAAACTGGTGCAAGACTTCAAAAATCTTCAAACACGGATTGAAGCTCTTTTTCTAAACTCGTATGGCTGAATGAAATCGCTCCATCACAATCCAAATCGCGAATCATTTCCTCGACATCGTCCAAGTTCTCGGACGCTTTCTTTAGCTCATCAATGGCCCCTTTTCCCCAAACGCCTTTTCCGATTAAGTTTCCAATGCTCTCATGCGCACGGTCAAAATCATCTTCCTTGTACTCCACATCTTTCATGCTGTATACTCACCTCTTCGTTGTATTCTATTTCTACTTTTACAGTGTAACATACAATATGGAATAGAAATGTGACTATTTGATGAAATCGTCTAGTAACAATAGAAAAAATGGCATAAAAAATAACCCCATCCATTTGGACAAGGTCAACTTATAATCCGTT # Right flank : CCTCAAATTAAACGTCTTTAACTGGGAGTTTTGCTCTACTCCCGTATTTTAACATAAAACTCTGACATCGAACAATAAAAAATGCCTCACTTGTATAACAGCAAGACATCTTTTTACCGTTAGTTCATGTTTTCCCTTATAGACCAGTTTTGTGTCTTCTCTCAAATACTATCTTTATACAAAATCCGCTGATTAATAGATGTCATACTCCATTCATAGTACGTAACCTAACTACTAAATTTATTCTGAAGCAAAGCGATTTGAAACCCTTAAAAATTGTCAATTTATGCTCAACTTATCTTTTTTCACATACAAAAAAATCCCAGCACTCTTAAAGTGTTGGGATTACTTCGAACCGGTACGTCCGTAACGGGCGCTAGATTTTTTTCTCGTTCAATAGGCTTAAAGTAAATTGATGAATAGAGAGTTGCACTATTCCGATTCAAAACATGTTCTCACAAATAAGCAATTTTCTTAACAGTATTGGCTGTTCGGGTTGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACTAAATCTTTAAGAGTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 56299-56729 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODF01000045.1 Listeria floridensis FSL S10-1187 c42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 56299 36 100.0 30 .................................... TATGAAAGTGGACAAAAGTTTGAGTGATAC 56365 36 100.0 30 .................................... CTTCGTTATGACGGAACAACAGACCACATG 56431 36 100.0 30 .................................... ATTTATTTTCAGTACCCTCAAGAACTCGCT 56497 36 100.0 30 .................................... AGCCCCCCACTCTTGACGTTCTTGTCTAGA 56563 36 100.0 30 .................................... GGGACGATGAACTTCCTGGTGCAACATTAA 56629 36 100.0 30 .................................... CTATATGGGTAACGGCAAGCTTAAATATAG 56695 35 83.3 0 .......................A..A.-.G.TT.. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 97.6 30 GTTTTTGTACTCTTAAAGATTTAGTAGCAGTAAAAC # Left flank : TGCTAGGGAAAATTGGCTAGTTTTGCGAAACGCAGAAAGCTTCATTTATGGAAAGCATTTGCAGCGGTTTATGGATGAGTTAGAGAAAATCAGTTTTGAAACAAAGCTTTTGAAAATTTTCGTTATCAGTGATTCATATGTTGATTTCACCTATACGCAAGAGGATATTGAAAAAACGATTATTTTAGGTGATCAAGATGAGCAATTGCCTCCGTTTGATGTGTTTCGTAAATCGATTTGCAATCACTATCCTTCGGAATTCATATGGTCGGATAATCAATTGGTGTCGAGTGCATTTCGCGTTTTTCATTATCTTGGTAATGAACGGCTTTACCCGTACATAAATGAAAAAGATATGGTATTATTAAAGGTAGTGACAGGTTTACTCGGAATGCCAACACTAGAATGTTTGGTGATGGAAGACGGTCTTAATGATCTGGAACGCGCTTTTTTGAGAGATAAATTACAAAAAATTTTTGATTGAAGACGTTTAATTTGAG # Right flank : TAGTTGACCTTGTCCGAGTGGATAGGGTTATTTTTTATGTCCTTGTTGTATGTTTACTAGATGATTTCATAAAATAGTCACATTTATATTCTGCATCGTGTGCTACACTTGAAAAGTACAAATAGAATACAACAAAGAGGTGAGTGTGCAGAGTGAAAGAGGTGGATTACAGCGAAGGTGATTTTGATCGTGTGTATGACAGTATCGGGAATTTGATCGGGAAAGGTGTCTGGGGCAAAGGTGCGATTGATGAGCTGAAAAAGGTATCAGAGAACTTGGATGAAGCGGAGGAAGACATTCGGAACTTGGATCGTGATGGTGCGATTTCATTCAGCCATACAAGTTCAGAGAAAGAACTGCAAGAGCTGTTTGAGGATTTTGAGGTGCTGCACCAGTTTTCTGAGCGGGTGGATGAACTTG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTTAAAGATTTAGTAGCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 26118-27013 **** Predicted by CRISPRDetect 2.4 *** >NZ_AODF01000007.1 Listeria floridensis FSL S10-1187 c6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 26118 36 100.0 30 .................................... AGTTCGAGTTACATTTTCCCGGAAAATTGA 26184 36 100.0 30 .................................... TTCATGAACGTCGGGGCTCCCTCCGACGTT 26250 36 100.0 30 .................................... ATTATTAACGAATACTCAAAAACGCATGAG 26316 36 100.0 30 .................................... ATTATTAACGAATACTCAAAAACGCATGAG 26382 36 100.0 30 .................................... AACAAACCATTTTTTAGAATTTCTAGCATG 26448 36 100.0 31 .................................... TTTTCTTCCTCAAATACAAACACAGTTCTTG 26515 36 100.0 30 .................................... ATCATTCTTACCTTTTATTCGCAACTCATC 26581 36 100.0 30 .................................... ACCGCCAAAGAAACAATTATGCTTCTCAGA 26647 36 100.0 30 .................................... TGTTGGAAATAACTGACCTCTATGCAGTTT 26713 36 100.0 30 .................................... AAGCGAGTGCGTATCCAGAAGCTGATCAAG 26779 36 100.0 30 .................................... CATTCGTAATAATATAATGCCTAGCAATTG 26845 36 100.0 30 .................................... CCATTGGAACATGAAATGTCTGTGCATGAA 26911 36 97.2 30 ..............G..................... ATTTTGCCAGAAACGGATGCGTTGAGAGGC 26977 35 86.1 0 ..........................A.G...TG.- | AT [27007] Deletion [27012] ========== ====== ====== ====== ==================================== =============================== ================== 14 36 98.8 30 GTTTTTGTACTCTTAAAGATTTAGTAGCAGTAAAAC # Left flank : AAGTATGATGAACAAATTGACAGTGTTGTGAAGTATGAAGATAAGCTATTATCAGATGTAAATGAACAAGAAAGAAACTTAAAAAGGGAGGAATGTAATTTTAAAGTTTTTAAAAACGGACAGTATGTTTTTATTGAATATCCAGGGCGTAATGAAAGTAAAAAGTTGCGTAACAAGCTATTTAAAATAGAGTCTAAAAATGGAATTTTTTCTGTTCCTGATTACAAAGCAGATGACTGGGAAGCTGATTATACCGAAACAAATGTAAAATAATTTTTTTGGATTCGCTATATGTGTTCTGGTGTTTGCGAACGGGTAGAGTGATTAATAACTACGGCTCTCAGTAAAACAGGTTTATCAGGAGGGAAATAAGAACTAGTAGCAAAAAAAGATGTCTTACTTTTATACAAGTGAGGCATTTTTTTATTTTTCGATGTCAGAGTTTTATGTTAAAATAAGGGTGTAGAGTAAAACTTTCAGTTAAAGACGTTTAATTTGAG # Right flank : AGTTGACCTTGTCCAAATGGATGGGGTTATTTTTATGCCATTTTTGTATCGTTACTAGACGATTTCATCAAATAGTCACATTTCTATTCCATATTGTATGTTACACTGTAAAAGTAGAAATAGAATACAACGAAGAGGTGAGTGTACAGCGTGAAAGATGTTGAGTACAAGGAAGATGATTTTGACCGTGCGCATGAGAGTATTGGGAACTTAATCGGGAAAGGCGTTTGGGGAAAAGGGGCAATTGATGAGCTAAAGAAAGCCTCAGAGAACTTGGACGATGTCGAGGAAATGATTCGCGATTTGGATTGTGATGGAGCGATTTCATTCCGTCATACGAGTTCAGAAAAAGACCTTCAATCCCTGTTTGAAGATTTTGAAGTCTTGCACCAGTTTTCAGGACAAGTGGATGAACTCATTCATACGAAAATTGATCGACCATTCTTTGAAGACTTGGATAAGTTTGTGGAAGGAATGCGGAATTTGGATGCGTCCAAATT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTTAAAGATTTAGTAGCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //