Array 1 72758-78186 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCNX01000006.1 Methanoculleus thermophilus strain CR-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================= ================== 72758 32 100.0 35 ................................ TCGACCCACTCGTCGATAAGAGAGGCGGGATCAGG 72825 32 100.0 34 ................................ CAGATGGTTCCTCCGGTCGAAACAGAAACTTATT 72891 32 100.0 35 ................................ TCCCAGACCTCGACGGCACCGGCTGCCGGGGCGAG 72958 32 100.0 34 ................................ TGATTCTTGGAGCAATCATGGTCGCCGGGGCCAT 73024 32 100.0 35 ................................ GTGACCCCGGCCCCGCTTTCCCCTTTGGGGGAGGA 73091 32 100.0 36 ................................ TCATACAGAAACCTCCAAACTTGTTGCTCGGAGGCA 73159 32 100.0 35 ................................ GCGGTTTATACAAGCGCAAACCGTTAATGGAACAA 73226 32 100.0 34 ................................ ACTATCCAGGTATCCTGGACTCGTCGCATAGACG 73292 32 100.0 34 ................................ ATCGCTGAGCGGGTTCTCGGCCCGGACTCCCTCC 73358 32 100.0 36 ................................ GTGATTGATTTCTGCGGGCTCACCGGCGACGTGGTC 73426 32 100.0 34 ................................ CACCTGCTCGCCTCGTCCACGAACGGGAAGTCCC 73492 32 100.0 35 ................................ CCGGTCGGGACCGGCGTCGTCCGGTTCAAGATCCG 73559 32 100.0 37 ................................ AAGGAGAGATGAGGAATGAGCGTTACGGAACGTCAAA 73628 32 100.0 35 ................................ ACTCGCCCCTTGGTCATCCGATCATGCCTCCGGGA 73695 32 100.0 35 ................................ CCCCTCCTGATGGGGGTCGCGATGGAGCAGGTCAT 73762 32 100.0 35 ................................ ACCCCTACCGAGGTCATCCTCGGTGCCACTGTCCC 73829 32 100.0 34 ................................ ACGATAAATGGATACGCACAAAAGAAGAGCAGTG 73895 32 100.0 35 ................................ CTCAGCGGCGGTCAGCGCCAAGGGCGGCGGCCGCA 73962 32 100.0 34 ................................ TCTCAGAGAGTGAGCAAGACCCCCGGTACGGAAC 74028 32 100.0 34 ................................ TCTTTAAACGTGCCGTAGAACAGGATCGGCTCGC 74094 32 100.0 36 ................................ CACTCGTAGAGGGTGATTGTGCTCCTGGTGACCTCC 74162 32 100.0 35 ................................ TACGGCGATTTTATCATGGAGATCTACGGCGCCGT 74229 32 100.0 35 ................................ AGCATCATACGACTCTCACCCTGTCTCCTCTCTGA 74296 32 100.0 35 ................................ ATTCCGGCCAATCTCGACGACAACCCTGCGCTGAC 74363 32 100.0 35 ................................ TGCTCATAGTAGGATTGTATATCGGGCATCGATAC 74430 32 100.0 34 ................................ ACCGGCGTGGTAGACACTACGAAACCGGCAGGGG 74496 32 100.0 35 ................................ TGCGAGAACGATGCGGCGCTGACGCTGTCGGTGCC 74563 32 100.0 35 ................................ TTCACCGAGGAGGTCTGGAACTGCTCCGCCTGCAT 74630 32 100.0 36 ................................ AGATTCGAAAAGCACGTCTATACCGGGTCCACAGAG 74698 32 100.0 34 ................................ TAGGTCGTAGGTGACTTCGCCCGGCGCGCTCGAA 74764 32 100.0 33 ................................ ATTGGACCGACGACGCGGAAGAAGTGCGCCGGG 74829 32 100.0 36 ................................ TCGTTGCAAATCGACCTGTAGGCTCGCCATCAGATC 74897 32 100.0 35 ................................ CAGGGTATACCGGACGCCACTATCACCTCCGTTTC 74964 32 100.0 35 ................................ AACCCCACAAGTTAACTTTCCCGGCGCCTTCAGCA 75031 32 100.0 35 ................................ TACAACATGAAATATCGCTACTATGCTGAATCCAC 75098 32 100.0 35 ................................ AATCCCGATACTTTAAAGGTAAATGGTCGCGCTCC 75165 32 100.0 36 ................................ GATGTCCCCGTCGAATTTATAAGAGACAACACCAGC 75233 32 100.0 35 ................................ CTGATGGGCGAAGACGGCCTCGTCGTGATGCTGCT 75300 32 100.0 35 ................................ CCGTTCGGCCGCCTGCCGCCGTACAAACTCCGCGA 75367 32 100.0 35 ................................ TTACCCATGCCGTAGAGGATCGCCATGATCTGCTC 75434 32 100.0 34 ................................ TCCCGGCCGGTCGCAAAGATGTCGCATTCAGACC 75500 32 100.0 34 ................................ CGCTCTGCAACCACTTGTACACCACCTCTCGGTT 75566 32 100.0 34 ................................ CAGGCGTCCCGGATAATACAGTACACCTGCAACC 75632 32 100.0 33 ................................ TACATGCGTGGCGGCGGGGTGCCCGCCCCGTAC 75697 32 100.0 34 ................................ CTGGCGAGACTCTCCCGGCTCTCGCCCCTGATGC 75763 32 100.0 35 ................................ CGGAGGCGCGAGTCTGCAACCGTTCGCCTGATACC 75830 32 100.0 35 ................................ ACGGTCGTCCGGAGGGTCTCATTGCGCTCCGGGAA 75897 32 100.0 34 ................................ ATCGAGTGCGGGCCGGATGTGCGGCCGGGCGGCC 75963 32 100.0 34 ................................ TCCCACCGATCGATGATCACCTGACAATACTGCG 76029 32 100.0 34 ................................ TCGGGGTAGAACCCTATGCGCAGGATCTCCTTAC 76095 32 100.0 36 ................................ ACAATGGAGGGAGGCCATATCCTACAACAAGTTCGA 76163 32 100.0 37 ................................ AGGGAGAGATACCGCGCCTGACCTACTCCCTTCGGCC 76232 32 100.0 35 ................................ GAGTATGTCGCGCTCAAGAAGGTCGCAATGAAGAT 76299 32 100.0 35 ................................ CAAAGGGATCTGTTTCCCATGAGACAAATGCATAT 76366 32 100.0 36 ................................ AAGTGCGGGGTGATTGCCGCCCACCCTTTCTCCCAG 76434 32 100.0 34 ................................ AAATCCGTGGGGTCCTGCCGCGACATCTGGCGGG 76500 32 100.0 35 ................................ CTCTCATCGCCCTGGTGCTCCTCGCGGCCGTGCTC 76567 32 100.0 34 ................................ CGTTCACCATCTGCATCCTGTGCGCCAACTCTCT 76633 32 100.0 36 ................................ CCAATAGTCGGCTCTGACGATCGCCTGACCGTCCCT 76701 32 100.0 34 ................................ CGCGCACATCGCGTACGCGCAGTCTCGGCAGATC 76767 32 100.0 35 ................................ TTCCCAAGTTTGTACACCAGATTTCGAGGTGTCGA 76834 32 100.0 36 ................................ AAGCGGAACCGGGAGGAGCCCCTTGCGGTGCTCCGG 76902 32 100.0 33 ................................ AAGAGGCGCTTGAAATTGCAGAAGAGTTTTACA 76967 32 100.0 36 ................................ GTGTATCCACCACTATCTCCGGCTGAATTTCAAGCT 77035 32 100.0 35 ................................ ACCGCTTTGACCTCAAAGCCTCTAATCGTCGTGCC 77102 32 100.0 35 ................................ CCTCGCGGGATATGGCGAAAATCCAGACAGCCATA 77169 32 100.0 34 ................................ GTGATCACCTGAGCCTGGAGCGAGGCGTCCGCTT 77235 32 100.0 35 ................................ ACGGACCCGCAGGTATCGCCGGGAATCCCGATGAA 77302 32 100.0 37 ................................ GTCTCCGTCACGCCTCTACCTCCATCATCCGCGCCTC 77371 32 100.0 35 ................................ ACCGATGTCCATCGCGAGCATTGAGAACTCGAGGT 77438 32 100.0 35 ................................ ACCGATGTCCATCGCGAGCATTGAGAACTCGAGGT 77505 32 100.0 34 ................................ TGGTGGCTGGCCCCACTCCCCTGCAGCGGGCCGC 77571 32 100.0 38 ................................ CAACATATTCGCGCGCCAAAACTAACGGCATCGTTGGA 77641 32 100.0 34 ................................ CAACACGTCGGTATAGTCATCTGCGACCGACATC 77707 32 100.0 34 ................................ TCCAGGTTGGGACGCTAAAGGGGGTGCTCCCCAT 77773 32 100.0 35 ................................ TCAAGCAGTCTAGGACTGAGTAAACACATTAAAAA 77840 32 100.0 36 ................................ CGTTCCAGTTCGTCGTTAATCAGCCTCTCCATCGCC 77908 32 100.0 34 ................................ TCGCGGCCTCGAAGGATTCCCTGGAGGCAAAGAT 77974 32 100.0 35 ................................ TAAACCGGCTTGCTCCATCCTCGAACAAAATGAGG 78041 32 93.8 81 .......................AG....... CGCCGGACCACGGGCAGGTCCGGGCCGAGGGTGTGTGGATTGAGGTATCCCCCTCCGTTCATCCTGCCCAACTCAAAGATT 78154 32 75.0 0 ..............AA.C..AC.......TCC | A [78180] ========== ====== ====== ====== ================================ ================================================================================= ================== 81 32 99.6 35 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : AACTATGGTCAACGGGTTCAGAACTCAGTCTTTGAGTGTCTGGTCGATCCTGCCCAGTTTGCGAAACTTAAACATACCCTCTGTGAAATAATTGACGAAGAGAAAGACAGCCTCCGGTTCTACTACCTGGGTAAGAACTGGAAGAACCGGGTGGAGCACTACGGTGCAAAAGCGGGGTACGATCCAGAAGGTTTATTAATTACGTAACCCTGCGAACCTCAAGCGAACAGTATATCCCTGGAGGGTTCGCGGAGAAAATTCTCTGATATTATATTATTTTTGTGGTGCGGCTGCTCGGGTCTGTGTGTTGTGTGTTCGCCCTGTCGGAGGGATTGTTTTGAAGTAAATATATGATATAAATTATATTTTTAGTTTCATTATGGTTGGATCGTCAAATTTGTTAAAAGGAACATTTATCTACCCGCGGATTGAATACCAACTAAACCCCGATCGTCCTCTCTCATGAATGGGTGGGGTGGATGATCCGGGTTGTCTTTGCA # Right flank : CATGCTTCTGGCGGGACGTCCCTCACTCCGCCCTCGTCTCCTCCCACCCGATACAGACCCTGATCGGGACCCTCTCCGCAAGCGCCGCCGCGACCGGCGAGCGCCGGTAGGCCCGGTTCACGAGGTCCTCGATCGTCTCCCGCGGTGCGTCGGCATCCACCCGGACGGTCAGGCGGACCTCGTCAAGGCCCGGCCGGGTGTTGCCGATCTCAAAAAAGCCCGCGAGGTCGAGGTCGCCCGCAACATCGATCTCGATCAGGTCGACCTCGATCCCCTCCTCCGCGGCGCTGTAGGCGATAGAAGCCGCGATGCAGGCCGAAAGCCCCGTCAGCACCAGTTCCGTCGGGCTTGGGCCCCGGTTGCTCCCGCCGAGCATCGCCGGCTCGTCGGCCGGGACGGCGAAGTCCCGGACGATCGTCGTCGTGTGCGCACCCCCGTTCCAGGTTGTGAGGGCGGAGAGGGTCCTCTCGCCCGCTGCAGGATCCCTTGTTATCCGCTCC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //