Array 1 205671-204252 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAWI01000004.1 Streptococcus agalactiae strain BSE003 out_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 205670 32 100.0 33 ................................ AGTATCTGTAAAGGATATTTGCGTACTTGCTAC 205605 32 100.0 34 ................................ ATCGTAACGAAGTCCTTTTTGATTACTCAAAAGC 205539 32 100.0 35 ................................ TCCTTTTGATTTGCTAATATTATATCACTAAATCA 205472 32 100.0 33 ................................ TTATCCTTGTCCAGACACTCGCTCCTCTCCTGT 205407 32 100.0 34 ................................ GGGAGTTTGGGAAGGCATTAAGGGTGGCTTCAGC 205341 32 100.0 34 ................................ TAAGATGTCGCAAGCAACAAAAGATATGCAGCTT 205275 32 100.0 34 ................................ TGACAGAACAGCGTGATTTGCGGCTTGTTGCATA 205209 32 100.0 36 ................................ AAATCAGAAATCGTTAATGGTCGTAGAAGATTTGTA 205141 32 100.0 34 ................................ AATTGTGATTATCGGAGAGGACAATAATGGAAAT 205075 32 100.0 34 ................................ TAGATTTAACAATCTAGCTTTTCGCATAGCTCTC 205009 32 100.0 35 ................................ TGATGTTTTATCGTCTAGGCTTAACTCTTTGACAC 204942 32 100.0 35 ................................ AAAATCAATTTTCTTTGACCACGCTCTAGGATTCC 204875 32 100.0 34 ................................ TATAGTGGATATTATGGTTAATAATAACGACCTA 204809 32 100.0 34 ................................ CTATGTTGGCAAGCGAAGAATTTGAACGAGGATA 204743 32 100.0 33 ................................ TTTCAGTTGAAGCAGAAGAGAAACAAAGAGCAG 204678 32 100.0 34 ................................ TCAATATCGCTTACTTTTTTAATAACATCTAAAT 204612 32 100.0 34 ................................ AAAAGTAAAGCAGGTGTAGTATACTACACAAGTT 204546 32 100.0 35 ................................ TGATAAAACTAATTCCGTTTTTATACGTTCAGCAA 204479 32 100.0 33 ................................ ATGAAAATCTAAAGTCTGTTATCGCTCACAGAT 204414 32 93.8 33 ...................T...A........ ATATTACCATATTTTAAAACAACCTTTAATTTA 204349 32 100.0 34 ................................ ATAAGTTCAGCAACTTCACGAGAAAATGTTCCTC 204283 32 84.4 0 ...................T..A.T..C..C. | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 99.0 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : TCTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : ATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAACTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGCCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACATTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTATTTTTGATGGAAG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 159117-158421 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAWI01000003.1 Streptococcus agalactiae strain BSE003 out_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 159116 36 100.0 30 .................................... AGCCCAAGCGTTATAACCATCACCGATTAG 159050 36 100.0 30 .................................... ACGCCAAGGTGTAGCAGTAAAACCAATCCT 158984 36 100.0 30 .................................... TAATACTAATTTACTAGCGTCAAATAAATC 158918 36 97.2 30 ..............C..................... AGCCCAAGCGTTATAACCATCACCGATTAG 158852 36 100.0 30 .................................... CAAGGACAAAAAACTTACTTTGGAATGGAC 158786 36 100.0 30 .................................... CGCTGTTTGTTTAAATTTTTATCAACTAAA 158720 36 100.0 30 .................................... ACGCCAAGGTGTAGCAGTAAAACCAATCCT 158654 36 100.0 30 .................................... TAATACTAATTTACTAGCGTCAAATAAATC 158588 36 97.2 30 ..............C..................... AATTTCCATAATCTGATCGCCAACCAGGAG 158522 36 97.2 30 ..............C..................... CAATATACCAACCAATCCTGTTACCTGATT 158456 36 97.2 0 ..............C..................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGTATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATCACGATTTTAGAACTCATTAAGGCACTAGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGATTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCAACGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : ATTAAAAGATGATTGTGGAGGCGTTGCAATGTTTTAGAGCTGTGCGGTTATTATGCTAGGGCACCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGGACGTCATTTATAGGTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCAATAGAAGAGATACGAAAGACTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //