Array 1 335127-335454 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSM010000001.1 Oscillatoria sp. FACHB-1406 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 335127 36 97.2 37 .A.................................. GACACAAAATGTATTTGATTCCAATTACTCCAGTTCC 335200 36 100.0 35 .................................... AAATAGCGGGCGCGCCACAGGATGCTGAGATTGCA 335271 36 100.0 37 .................................... AGTACAAGCCTACTTGCTAGCAAAAGACTATCGACAG 335344 36 100.0 39 .................................... CCTCGTTGTTCCGTTTGCCAACAATGTTGCCCTTGTTGT 335419 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 99.4 37 GTTTCCATTCAATTGGTTTCTCCAGCGAGTGGAGAA # Left flank : TGGCGTGGTCTTCGTAGCTGCCGTGGGAAAAGTTCAGCCGCGCCACTGCCATTCCCGCTTCAATCAGTTGGCGTATCACTTCTGGACTATTGCTAGCTGGGCCGATGGTAGCGACGACTTTGGTGCGATGGGATAAGGGCAACATTCGTGAAGAGTGAGGGGCGAATCGGTAAATCTGTGTTTCGCCACTCTAGCAAATGCGACCTAATTTGTCTGTGTTAATGCTTACTGAAAAGGTGGGAGTTGACACCAACGATCGCATTCGCCCGCGCCGTATACTTCACGCCGACACAAAATGCTATATCGCTGTTTTTGAGGGGATGAAGTATACCAGATAGGCGCAAGCCGCCGCGCCTCTAACCGTTGTGTTTTTGAAGGTGTATTCGATCCCAATTCTCAATCGCGATCGCTATTCAATCGAGATTGACTTTCGTTAGAAGATATTTTTAAGTCGAAAAATTAAGAGGGCATAGCAGTGCTATGCCCCTACGTTTTTATTT # Right flank : AGGCTACCCTTTCAAAGCCTCACCCAGAGCAAGTTCCAGATGCGGTTTTCGAGGGGGTGCTTCTATCATACCCTGAAACCTCAAAAAAGACTCGCGTAAAACGGCTGAAAGCTTTACTGGGAGGAATATCGAGGGGGTCAACGAAAGAATGCGGGTTTCAGCGATTTTCCGACTCCCTCGCAAACTGATGATACAAAATCGATCGCGAGGAAAAAGGCGCGGCGGGCTGTAACGTTGACTCCCCAGTTGTTTCGCGGCGGTTGGTGCGTTTTGGGCGCGCACCCCACGGCGACGGCGCAATGCCACTCTGTGCGGTACAAAGGGCGCTTTTTCGTGGCAATCTGTTATTTGTCTCAATAAGCCAATATCCAAAATATCTATCTAAATCGGTTATATCCTTTAAATGAAGGGCATCTTAGTGGCTGGGTTACAAGATTCAAGATATTGTCTTTTTAGAGAATCTCTCAAAAGTAGGCGAAATGAGGAGGCTAGGGATTTTG # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTGGTTTCTCCAGCGAGTGGAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 69739-69271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSM010000002.1 Oscillatoria sp. FACHB-1406 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 69738 36 88.9 35 CA...A...G.......................... TCTGACGACGAAAGCTCTGAATTACTGGATTTTGT 69667 36 100.0 34 .................................... GTTGACCGAGTTGATAAAGTAAACGGTCTGGCGA 69597 36 100.0 36 .................................... ACAACTCATAAAAAGCGTTGAGGCGCTGTCTGTCCA 69525 36 100.0 36 .................................... AACTGCTTAAGTCTCCTCTAAAAGGAATGGTCATGG 69453 36 97.2 38 .............A...................... GATCGAAGAACAAGTTAAGCTCTTATGGAGCGAAAGCC 69379 36 97.2 37 .............A...................... GAAAGAGATTCGCGGCGTTTACGCGGATGGGATTTGC 69306 36 97.2 0 .............A...................... | ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 97.2 36 GTTTCCATTCAATTGGTTTCTCCAGCGAGTGGAGAA # Left flank : GCGGAAATGTTCAGCGAGAAAAACGGCTGCGGTGTTTGATTGAATTATAATCGCCGAATCAATGCAGTTTTATTTAAATATAGATGAATGTTACTGAAATAAGCGTTGAAAAATCGCCTGTAGAGACGTTGACTTGCAACGTCTCTACAGATAATTTCGTAGGGTGGGCAGCGTCCACCAGCCAAAACTTTTGTGCGTTTATCGCCGTACTTTCACGTTTCAGGTAATCCCAATTCCCAATCGCGATGTACATAAATTTTTTGCTCTCCGGGGCATAACATCGATGAGAACGGGTTATACCAATTCTCAATCGCAATGCACTAAATTTTGTGCTGTAGGGGCATAACATTGTTATGCCCTCTTCAGGAATCGTGCAAAATCAATGAGAATTGGTATTCTGAACCTCATTCGATCGAGAATGACGTTCGTTAGCAAATATTTTTAAGTCGAAAAATTAAGAGGGTATAGCAGTGCTATGCCCCTACGTTTTTATTTGATTC # Right flank : GGCTACCCTCTCAAACCCTCCCTCAGAAAGGGTTCTAGAGGGCGTTTGCGAAGGATAACCTTATTGTACCTCTTCCAACCCCTCAGCAAGTGTTAAAAAATAGCTAAATCGCAGACCCAGAGCGGTATCGAGGGATAGAACGAAAGAATGCGGGTTTCAGCCATTTCCCGGATCCTTCGCAAACCGATGATACAAAATCGAAATTGAGAGCGATCGCGCCACCGCCCAACCAACCCCCAACACCTTACTGCTGCGTCCATTTCGCCTCCCCCCCAAAAAAACGATGCGCTCCCCCTGTCTTGGGTATCGTGCCGAAAAACGACCGATTCCCGTCAACACATCTCAGATCGCAAAAAAGACAATATCACTTGAAACCGATAAAGCCTTTGTATTGACGCAATAACAAGCTTTTTTAGTCAAAAATCAAGATAAAGTAATATTGTCTTTTTATGTGTAGCAATAGACACATCAGTAAAGAGGGTGCGATCTGCCAAAAACCG # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTGGTTTCTCCAGCGAGTGGAGAA # Alternate repeat : GTTTCCATTCAATAGGTTTCTCCAGCGAGTGGAGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 123187-121350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSM010000010.1 Oscillatoria sp. FACHB-1406 contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 123186 37 100.0 37 ..................................... GGCAATTGTAGGCGCGGCGATAGCGGATTGGTAGAGA 123112 37 100.0 34 ..................................... TCCTCATTATCTCGGACAAATTTAACTATGACAA 123041 37 100.0 35 ..................................... GATGCCGATGCCTGCGTTGCTGCGGCGTGGCTACA 122969 37 100.0 35 ..................................... AACTTTATCTTGTAGTTTATATCTTAAATAAGGAC 122897 37 100.0 34 ..................................... TTAAACTTTTGTTAGCCTGCGATATTTCCCGCTC 122826 37 100.0 34 ..................................... ACAGAATGGTTACGCCTAGCGCTAATGGACTGCC 122755 37 100.0 37 ..................................... GTGAATCAATCCCCATTCGATCGCGCGATATCGGCTT 122681 37 100.0 35 ..................................... AATCAAGATAAACGGTTGCAAGAATTCCTCAAGGA 122609 37 100.0 34 ..................................... GGTTGATACGATGGCATAATATTCAATCATTGTT 122538 37 100.0 34 ..................................... CGCGATCGCTTGCGCCGTAGCGATATGGTATCGA 122467 37 100.0 37 ..................................... GAATTTGTGTGAGTCAAAATGATGGCACGTCGATGTC 122393 37 100.0 33 ..................................... AGTAATTATTCATGCACTTGTCTCCGATCTACT 122323 37 100.0 35 ..................................... GCCGCCAGTGGGATGGGGAGGAAATCGCAAAACTC 122251 37 100.0 43 ..................................... CCACCCATTGCTTGGCTACCCTGTCCCAAAGTGCCAGGTAGCA 122171 37 100.0 36 ..................................... TACAGTAGGGGCGTTACCTCGGAGGTTCCCTCCGAG 122098 37 100.0 33 ..................................... TGGGAAGATTCAATCGCTTGCGATATCGCACGA 122028 37 100.0 33 ..................................... ACCAGAGTATCGGGCGTTGTTGTTTGATCGACG 121958 37 100.0 34 ..................................... TTTAAAAAATAAAGGATAAAATCAAGCTATCACA 121887 37 100.0 34 ..................................... GATTCGGCGGGCAATATCGGTTGCAAGCTGAGGA 121816 37 100.0 33 ..................................... AAGCTGCAATTCGACTAAATCAAATATCTCCGG 121746 37 100.0 38 ..................................... CTCAATGAATTCTAATTGCGCCTGAAAATCGCCGTCGC 121671 37 100.0 33 ..................................... TGACGCTCGTATCTCCAGCCTTCCCGATGGCTA 121601 37 100.0 35 ..................................... TTCTCTCGCAACTCCTTAATTCGTCCTTTGTTAGC 121529 37 100.0 35 ..................................... TTCAATCCTGTTAATTTCAGAAAATCCCATAGTTA 121457 37 100.0 34 ..................................... TGAGAACATAGATGATACTACAATCGAATATCTT 121386 37 94.6 0 .............................T......A | ========== ====== ====== ====== ===================================== =========================================== ================== 26 37 99.8 35 GTTGCAACTAACATTAATCCCTATCAGGGATTGAAAC # Left flank : CGCGAAGATAAGCGCCGAACGAAGATTCACAAGATTTTGAAATCTTACGGACAGTGGATGCAATACAGCGTGTTTGAGTGCGCCGATCTGACAGAAACGCAGTATGCTAAACTGCGATCGCGTCTGAGCAAAGTAATCAAGCCCGAGGAGGACAGCATTTTGTTCGTGCCGCTGTGCGCTTGCTGCCAAAAGAAGATCGAACGTATTGGCGGAATCGAGCCAATCGATCCCACTGTATTTTTTGTTTAATTGCCGGGAGACTGGGGGTGTAAATTTTGGCTCCCTGCTTTGGGAGGCTAGAATCGAGATACTGTAAGCGTTTGATGCCCTTCGTCCCCTTTTTGGTCTCCCGCGATCGCTAGGATGCTTATTCTGTAAAGGTTTGAAGCGTTGTTGCTACCTACCCAATTGACAAGCCGGAGTCTGAAATGGTACTTTAGGTTAAGTCTCCCGGAAATGAACCTTGAAAACCAAATACAGCAAGGGTTTCAGAGCCAGCG # Right flank : CACACCCCCGTGGGTTCCCGCGAGTTTCCCCCACTCGGAAAAGGGACGTTGCTCTCAACCCAATTTTCGGTAAGCTGTTCTGATGGCGTTTTTTGCGATTCATCTATGGCAACGATTAACGATAACTACCTCAAACTCAAAGCAGGCTACTTGTTCCCGGAAATTGGGCGGCGGGTGAATGCTTTCGCTGAAGCCAACCCGGAGGCGAACATCATTCGCTTGGGGATTGGCGACGTAACCGAACCGCTTCCGGAAGCGTGCCGTGCGGCGATGGTGCGCGCGGTGGAAGATATGGGCGATCGCGCCAGCTTTAAAGGCTACGGCCCCGAACAAGGTTACAATTGGTTGCGCGAAAAAATTGCCAGCCGCGACTTCCAGGCGCGCGGCTGCGAGGTAGACGCTTCTGAAATCTTCATCTCCGATGGGTCTAAGTGCGATACAGGCAACATTCTCGATATTTTTGGCAAAAATAACAAAATTGCCGTTACCGACCCCGTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTAACATTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 78268-78742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSM010000020.1 Oscillatoria sp. FACHB-1406 contig20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 78268 37 89.2 35 ....TTG..T........................... CCTGCTAAGGCTGACCCCATCGATGATGCGGTCAC T [78280] 78341 37 97.3 40 ........................A............ ATGGCACGGTTCCGCCCGATGTCCAGCAAGGTGTCGACGA 78418 37 97.3 35 .............T....................... TTTCAATCTGCTTTAAAGTCTCTAAAATACAAAGA 78490 37 100.0 34 ..................................... GGGGAAAACTTATTATTTAATACCCAAGCTACTC 78561 37 100.0 36 ..................................... ACATAATATCTCATTAATTCATAGATTTTATCTACA 78634 37 100.0 35 ..................................... TCGAACATCTCGAATGCGGCGATTATTGGGATTGG 78706 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 7 37 97.7 36 GTTTCCATTCAATAGGTTTCTCCAGCGAGTGGAGAAC # Left flank : GCCCCCACACAATTAAACGCATTCTCGACAGTGGCGACTGTTCCGATCCGAAAAATCCGCAGTCCTGCCGTGCAATTTATACTTTCGAGCAAGATGCGGAGTCCAATCGTCAAGCCATCTCCCCGGGGACGGCGAATACGATGACGACGTTGATGCGAGGCGTGGTACAGGGGGGAACGGGAAGTCGCGCGGCGATCGGAGTCGATGCGGTGGGGAAGACGGGAACGACGGATAAAGGGGTGGATCTTTGGTTTATCGGTTTCGTTCCGTCTCAGGATCTTGTAACCGGCGTATGGTTGGGTAATGACGATAATACGGCCACTAATGGCAGCAGCGGCAACGCGGCTACCATTTGGGCCGATTATATGCGCAAGATTACGCAGTAGGGGTTTATATTCCCGAGCGGGATTAGGGTGAGTTGCAACTTTGAGAATTCCTGGGAGTTGGCGAAGCTTTGTTGCTTCAATCTCCTATTTGGATTCAGATTAGTTGCAACCGAA # Right flank : CTGCCGGCTCCAGAACCCTTGCTGCGTTTGCTTTTCAAGGGTCGATTTCGCCGATCGCCTCAAAAATATCATTTCAGCCTCTGGCTTGTCAATAATTCACCCCCCAAAATCGCCTCAAACCCTTACCCAGAGCCACGGTGCGGATCGGCATCAACGATAAAACGCTTGAAACACAGACTAGGACTCGCATACAGCCTCAATTTTCCCACTTCCCGTTTCTACACCACCCGATCCGCACCCCAGTTGGGTGACGAGGTGACGGGGTGACGGGGTGACGAGGGGACACCGGATAAAAATCTTACCCCCAGTTTTAACCTTGTCAAAGTCGTGCTAATTGGTGTCAACTTAAGCTTAATCCCCCTCTCACCTAGCCGCCTTGGGTTCAAACCCAAGGCTAATAACTTAAGTCATCTAAAGATGACTCGGAAATTCAGATGTCTCCAACCCGTTTCAACGGGTTTCAGCTATTAGCCAGGAACTTAAGTTCCTGGCGGGCTAAG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATAGGTTTCTCCAGCGAGTGGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 6809-5911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSM010000028.1 Oscillatoria sp. FACHB-1406 contig28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 6808 35 100.0 37 ................................... GTCATCTGTATTTGAGAAAACTTCGCCGTCAGTGAAA 6736 35 100.0 36 ................................... GAGGAAAATGTAGCAGAAGAAAAGGCGATACAGTCG 6665 35 100.0 35 ................................... TTTTTTCCTCTGGAGAGAGGTTTGTTCTTTCAAAT 6595 35 100.0 34 ................................... TACTATTACCGTCTAACTGCATTGTTGTCTGAGG 6526 35 100.0 36 ................................... TCTGTTTTTTGTTCATCAGAGTAGTAAAAACCCATT 6455 35 100.0 41 ................................... CATGCACAAATTTCCCAGTGCGGAAATCTTTGATCTGAACC 6379 35 100.0 38 ................................... TCGATAAACAATCACTGCTTTCCCAGTTACTGGGTCAG 6306 35 100.0 38 ................................... TTCGCCACGTGAATCTGGCTTTGTCAGCCGGATTATAC 6233 35 100.0 38 ................................... TTTTTCAATCTTTGTTTGGCGCATTCTCGATCGAAAGT 6160 35 100.0 41 ................................... TGTTCCGCACTTAGTGCAGACATATGTGGGCTTACTAACAT 6084 35 100.0 33 ................................... CCGTCATGTCTCTTTTACAGATTGAACAATACC 6016 35 100.0 35 ................................... ATAACTATATGATCCGCTATTGCTTGGCGGCATTG 5946 35 97.1 0 ..................................T | C [5913] ========== ====== ====== ====== =================================== ========================================= ================== 13 35 99.8 37 CTTTTCCCTTCGGGGAAAATGAATCGAATGGAAAC # Left flank : GTTGAAGTCTACACACCCGAAATCCCCACGAGTGAGTTAGATGCGATCGCGATTTGTTATTGTGAATATGCCCCGATTGATGCTCCTCTCGAACCCATGCCCGAGCGTCAAGTTTCTCTCGATTCCTTCGGCGGGAATCAAAATGCTTATCGGGAGTGGTTAGAAAGCCTGGAAACAGCGGAAGTTTGAAGACCTAGGACGAGTTAAGGGCAGGAAGGAAACGCGATTTTGACGATATTTTATGCTCTGCTTCAATATTTCGCTATCAATCTTTTCTATCTCCCGCTTTCTTCCATTTCCTCAATTTGCTGAGGCAAGTTCGAGATCGCTGAAACCCGCATTCTTTCGTGGTTTGCCTCGGATACCGCTCTGGGTGTGGGTTTGGAGGGGGTCACTCCGCTGCTTATTGAGAATCTGTAGCGATTATTTACCCCTTTTTTGCCGAGCCTCAGATCGAGGGGTGTATAATGCAGTCAGGACAAGCCCTCTAGAAGGGTAGC # Right flank : TGAAAAGGCTAACCTTATGGTTAGCCTAAAGGGAATCATGATTTAGTAAGTTATGAAATATGCAAGGGTTGAGAAGCTGTAATCAGCAATCATAGGAAATCCGGATAAACAGCCGCACCACCCTAATTGACTTCCCTGCGGACTGGAGCGAGAAACAGACTATGGTCATTCAACCGGATGTCAAATCATCACCTATTTTGTCTAGCCAGAAAGCCGAAAAACGCAGCAGGTTAGCGAGTTCGGGCAAGGTTGCGCCCAGAGGTTTAGTTGCTCGGATTTTTGCGCGATCGCTCGCACCGTTCGCCCAATTTTCCCATCGCTCTAACCATTGACAAAGTAGCTCAACTGTGTATTCGATATTTTTATATTCTTCCCGCCGTAGAGCGATCGCGCGGGCTGCTTTAGCGATGAGGAAATGCTCGGAAGTAATAACAGCATGGCGGGGCAAATCTTCGGCGAGGCGATAGAGCAGAGAACTAAGTTCCTGGCGATATTCGGGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCTTCGGGGAAAATGAATCGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 17603-17354 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSM010000028.1 Oscillatoria sp. FACHB-1406 contig28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 17602 35 100.0 39 ................................... CCGCGTTCATCTGGTGTACAGCTAAAACTGAAATTGCCA 17528 35 100.0 34 ................................... GGATTTCCGCACTCCCATCGCTGTTTTGCTTCAT 17459 35 100.0 36 ................................... TGGTCTTTGTCTGCTTGTTCACACTGCATTTGGCTG 17388 35 97.1 0 ..............................A.... | ========== ====== ====== ====== =================================== ======================================= ================== 4 35 99.3 37 CTTTTCCCTTCGGGGAAAATGAATCGAATGGAAAC # Left flank : TGTCGAGATCGATCTCTAGCTCTGCAAACAGCCGCTGGCTTGAAGAACCATCGTTCGTGCGCGCTCCCATGTTAAATTTTGGAGAATTTATATCATCGTAATTGTAAGAGAGACTCGTGGGAGGGAGCAAGTCACTTTTGTCGCCCTCTCCCTAAATCTCTCACCGAAGCGAAAATCGTAGCAGACCCAATCGCCAGCAGCGAAGTTAGAAAAGCCAAAAGCCTAAATTCGCTTAAATTTAATGCTCCAGATTTATAAATCGTCGTTAATCTTGTTTTCCTCTTTATTTCTTTCATTTCCTCAATTTGCTGAGGCAAGTTCGAGATCGCTGAAACCCGCATTCTTTCGTGGTTTGCCTCGGATACCGCTCTGGGTCTGGGTTTGGAGGGGGTCACTCTGCTGCTTATTGAGAATCTGTGGCGATTATTTCCCCCCTTTTTGCCGAGCCTCAGATCGAGGGGTGTATAATGCAGTCAGGGCAAGCCTTCTAGAAGGGTAGC # Right flank : CCTCACGAGCAGAAGCCAAAGTGAGGGTTATTTTTACCAGAGCAATTGCTGAGCTAAAATACAGCTATCCCTAACCCGGCTCTCAAAAACTGCTTATGCCGCGTTCCGTCCGACTTCATCCAGAGCGCAAACCTGAAGTTCTTCGTGCCTTAGAACGCAATGGTTTTCTTACTCAGGGTCAATTCGCTTCTCATATCGAGATATCTCTCTCCACAGTCAATAATTTCATCAATAGTCGTCGCGTTTACGTCTCTAAATTTGAGGAAATTTGTCATGTTTTAGGCTTAGAGCAACAGGAGATGGTTAAACCGCTCTCCGACTCCATAAAAATCATTTCTAAGACTCAAAACGATTTGCCTCCTGTCCCCCTTTATGCTTGCGACGATAACTGGGTAGGACGAGAAAAACTGGTCGCAGAACTAACAGAAAAACTGACAGATTCTTTTCGATTATTGCTAATTCTGGGACTGACAGGAGTCGGAAAAACCGCTCTCGCCGAA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCTTCGGGGAAAATGAATCGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 21085-20544 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSM010000028.1 Oscillatoria sp. FACHB-1406 contig28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================= ================== 21084 35 100.0 36 ................................... CACTACTGTATACCTCCCCTCTAAGACTAGGGGACT 21013 35 100.0 41 ................................... CCGTAGACGGCTTTATGGTCTGAGATGGCCCGCAAACATTG 20937 35 100.0 36 ................................... CGGTTTGTGCCATACATGGTTGCATCCATGTCCAAT 20866 35 100.0 33 ................................... GCGACTGTTGCTTCAATCCCTTTTCAAACCCCT 20798 35 100.0 45 ................................... TGTTAACCATTGTTATACCAACTTTTCTTTGGTTTACAGTGCATA 20718 35 100.0 37 ................................... TGGTTGCTGAGGGCAGCAACCTCTTCAGCTGTTAATT 20646 35 100.0 33 ................................... AACCAACTGCGATAGCCACTAGAGCGAAAATAG 20578 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================= ================== 8 35 100.0 37 CTTTTCCCTTCGGGGAAAATGAATCGAATGGAAAC # Left flank : GGGGGATCGCACCGCTGTACTACTCAACTAATGAGTTGTGTGTACACCGTAGCTTACTAAAGGGGAAAATGCGAGGGGAGAAAGAACAGTAATAGCGATCTTTCTGGCTTCTAATTCACTTTAGGCGTGAGTTAGGAGTTAGGCACTTTAAGACTCGCACTTTCCTCTTCATCCCATCCCCGTGTCAGCGCGTCTCCCTACATCGTCAAAAAAGCCAAAAGCCTGAATTCGCTTAAATTTAATGCTCCAGATTTATAAATCGTTTTTAATCTTGTTTTACTCTTTATTTCTTCCATTTACTCAATTTGCTGAGGCAAGTTCGAGATCGCTGAAACCCGCATTCTTTCGTGGTTTGCCTCGGATACCGCTCTGGGTCTGGGTTTGGAGGGGGTCACTTTGCTGCTTATTGAGAATCTGTGGCGATTATTTACCCCTTTTTTGCCGAGCCTCAGATCGAGGGGTGTATAATGCAGTCAGGACAAGCCCTCTAGAAGGGTAGC # Right flank : CAGGGTTTTTGAGAGCTTCTTCAAGCTCTTTTTTGTTGAATTTCTAAACAGCGATCGCGCCCTAAAAAGATAGCGCTATCGATTTTTTTGCTTCACCCCAAAATGAAAGTGCAGAGGGAATGCTCCAGACACAGAGATACGGCAAAGATAGAACGGCGAATAACGATCGCAATTTCATCCAACTTATAACTCAAAACTCATAACCCACGAATCCTTAAGCGCCTGACATTCCTCAAGGAGCGCAATTCCTAATTCTGTAGAGAGCGATAAAGCGCGATCGCAGTATTCGAGTGCTTCGGATAACTCTCCTTGTTCGTAATAAAGAATTGCCAGAGTTTTGAGCGCAAAGGCTTCAGTCGAGCGAACGCCAATTTGTTGGCAAAGCGAGATCGCGCGCTGCAAAAATGTCAGAGCTTCCGAATATCGTCCCAGCTTAATTAACGTATCGGCTAAGTTATCTAAAGTTTGTGCTTCCATTAATAAGTCGCCGATGTCGCGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCTTCGGGGAAAATGAATCGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 115934-115675 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSM010000003.1 Oscillatoria sp. FACHB-1406 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 115933 36 100.0 37 .................................... CAACATAAAAGAATATTTGAAGGAAGGTAAACTTCAA 115860 36 100.0 42 .................................... TCGCTCGCATCCCTTTGCCGGGAGAGGTTGTCCTCGTTCTTT 115782 36 97.2 36 ........................A........... TTGTTGAATCAAATTGCAGAATCCTTTTTCAATAAA 115710 36 97.2 0 ........................A........... | ========== ====== ====== ====== ==================================== ========================================== ================== 4 36 98.6 39 GTTTCCATTCAATAGGTTTCTCCAGCGAGTGGAGAA # Left flank : TTTTAGTCAACAAACTTTGGAGTCGGGGAGAGGTTGTTGGAATTTTACGAAGTTAACCCGCTCTATTCAGTGAAGGTTAGGCGAATTCGAGCGTTGCTATTCCATCTTGTTTCTTGGGCGGGTGGAAAGCTCTTCTTCGCTCGAGTTAGAAGCCCCTGGGTTTCTGACTATCAATCGGGGAGTTATCCCTCGTCCCAGCTTTCCTGGGTATAACCGAGTTCTGATGCTGCATCCTGCTCTTCGGGCGTTAGTTCTTCCCAGTATTTATCATTAGAGTCGGGTGCATCATCTTCTTCTTCCCAACTATCCCGATTCCAACCGAGAACTCTCCAAGCGTCTTTTTCTTCGTCACTGAAATCGCTCCAGCTTAAATCGTCCCAAGTGTCGCCCGGGTCGCCTTCCACTAGCCGAATTCCTGTCATGGCTTTGACCTCCAAAAAGGGATAAGTTTACTTGAAGTTTACGCTAGTTTAACGATTAATGAAATGTTTCCATTTAAT # Right flank : GGCTACCCTCTCAAACCTGCTCCTGGAGTGAATTCCAGAGGGCGTTTGCGAAGGATAGCTTTATTGTACCTCCCCAAGCCCCTCAGCAAGTCTTAAAAAATAGCGAAATCCCAGTCTCAGAGCGGTATCGAGGGATAGAACGAAAGAATGCGGGTTTCAGCGATTTTCCGGATCCCTCGCAAACCGATGATACAAAATCGAGTTTCCAGCTTTAACGCCGATCTCGCCCTTCTCTCTCTTCAAAATGCTGTATCCCTTGCTGTTGCGTCCATCCGCCCAAGGTGTTGATGCTTTGAGAGCGCAACAACCAAGCGACAACGCGGTCGCCGAGGGTACAAGCAACGAAGGTGGAGAGGACGATGAGAACGGTGTTAGTGATGACTAAGGCTAAGCCTAGCGGCGCAATTAGGAGTAAAATTAGGGTAATTGCGCCGTTGATGCCGGAAACGACGATGCTACGCACGAAAGCCGCACGATTGGATAAGTACATCGCAGTTATT # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATAGGTTTCTCCAGCGAGTGGAGAA # Alternate repeat : GTTTCCATTCAATAGGTTTCTCCAACGAGTGGAGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 2 207294-208194 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSM010000003.1 Oscillatoria sp. FACHB-1406 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 207294 37 100.0 37 ..................................... GGGAGATGCGGGTACAGGGCCGCATCTTCACTTTGAG 207368 37 100.0 33 ..................................... CTCTCCAATGATGCGATCGCATCTGCTGGCAGC 207438 37 100.0 33 ..................................... GACAAGGATGAGGAAGTAATTTTTACTGATGCA 207508 37 100.0 34 ..................................... ATCAACTGAAAAATCATTTACCTCTAAGCCAAGG 207579 37 100.0 35 ..................................... TCAATTTCGCGATTGATGGGCTTCGCTTTGCCGAT 207651 37 100.0 36 ..................................... TTGGCTCTCGAACGCGAACGGGAGCAGATCGGCGCG 207724 37 100.0 34 ..................................... TCAGTTGACCACGGCAGAACGCGACGGCGACGAT 207795 37 100.0 35 ..................................... GCTTTTTTTGGCTTCGGTCTTGTGGTTCGCAGTAT 207867 37 100.0 35 ..................................... GAAATCGCGATCGCAACACCTGCGGGGAGGCTTAA 207939 37 100.0 35 ..................................... ATATACCAGAATACCGTTACTGCGATCGCGAGCGA 208011 37 100.0 38 ..................................... AGGGGTATAAGTGGCGATATCTCCATCTTTCGTATATT 208086 37 100.0 35 ..................................... GCGGGGAAACCCTTTCCCACGCCCTTGGAAGCATC 208158 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 13 37 100.0 35 GTTGCAACTTCAATTAATCCCTATCAGGGATTGAAAC # Left flank : CCGGAGGTGAATGAGAAGTTAGCGAGGTGTCGGAATAATTCTGAAATTTCGGTTTGGGGGCGTTGCAATGAGTCGGGGGGGTGGTTGTTGGTGGAGAAGTTGAGTGAGTAGGGACTGGGGGACTGGGAGAGGGGGAGAGGGGGAGAGGGGGAGACTGGGGAGCGGGATTTTGTTTGTGCTGCGATCGCGAGAAGATAGACTGTAGGGGTGGTATTGAGCTAATCGAGCCGATTGGATTTTTGGGTCGGATTGCCGGGAGAGTGGGGGTGTACAAATTGGCTCCCTATTTTTAGAGGCTAGAATCGAGGTGCTGTAAGCGTTTGAGGCACTTTTTACTTTTTTGAGTCTCCCGCGATCGCTAGGATGCTTATTCTGTAAGGGTTTTGGGCTTTATTGCTCCCCCCGCAATTGACAAGCTGGAGTCTGAAATGGTACTTTGGGTAAAGTCTCCCGGAATCGAACCTCGAAAACTAAATACAGTAAGGGTTTCAGATGCAGCG # Right flank : CACCGAAAGAATGTTTCCTCCCCTGATGTGATATAGCGCTACTTGAAACGTGAATTTACGTTGCTAAATGTACCAAAATCTTGGCTGGTGGGCGCTGCCCACCCTACTAGACCGGCAAGCTTAAAACTATCTAGGTTTCTTCATTTTTAATTTTTAATTTTTAATTGGTATTACCCTCCCTGATGTGGCAGTAAGGACAGTCGCTTTAAAACGGTAGCCCATCATCTTCAACTTTTTGCAATTGAACGGGAGGATTAAAGGGAATCGGTTGAACGCTCTCGCGTTGCTTATCGCTATTTTGTAAACTTTCCGTCCATTGTTTAGCCAAAGAAATGAAATCAGACGGCATCATGATTAAGGTTGTCGTATTATTTTCTGCGCCAATTTCAGTGAGCATTTGCAGCCGTCGCAATTCCAAAGCTACTGGATTTTCCATGATCTTTTGCGAAGCTTCGGAGAGTTTTAAAGATGCTTCTTGTTCGGCGGCGGCTTTGATGATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 90030-91003 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSM010000009.1 Oscillatoria sp. FACHB-1406 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 90030 36 100.0 37 .................................... TCCGTTTCCCAAACGGCCGCCGCCCCCACCCAATAAT 90103 36 100.0 42 .................................... TGTAATTCCGCTGATCTCTTTTTTGACTGGTGTTTTTACGAC 90181 36 100.0 34 .................................... TAGCACCCCCACATCGGCTTACGGGGAGTTCATC 90251 36 100.0 36 .................................... TATTCTCTCTGCAATCTTCGGGACGGATATCTATTA 90323 36 100.0 34 .................................... TTTTACGTCCATCGAGACGTATTGATCGATCAAA 90393 36 100.0 34 .................................... TCTGGAAACGGGTAGACGAGAAAAACCCCGCTGA 90463 36 100.0 40 .................................... CACGCCTGCTCGCAAACACTCGGTAATGAAGGTATGCCTG 90539 36 97.2 34 ...............C.................... CCCGCTAAGTAGCGATCGAGGCACGGATCGCCAC 90609 36 100.0 33 .................................... CCGGTCTGGCGCTTGCTGCCTTGACCGTTGCGC 90678 36 100.0 37 .................................... CTCCCAATAACCCCTATCCCGGCAAGCTCGCGTTGCG 90751 36 100.0 39 .................................... CTCGATAGTTGCGCTTATTCCAAGCATCGAATAAATCCT 90826 36 100.0 36 .................................... CGCTCAAAGAAGGCTCGGAGGAAGCAGCGCGCCGTG 90898 36 100.0 34 .................................... CAAGGATTCGCTTCTGGCAAAGGGAAGCTCATTA 90968 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 14 36 99.8 36 GTTGCAACAAACATTAATCCCTATCAGGGATTGAAA # Left flank : TGCGGAACCTCGCGATCGCTTACGATATGGTAGATTACGGCACGATGCGCTATAACCTACTCGGCAGCGGCGGGCATTGGTTCCCCGGTAACAAAGCCAATAAGTTGCCCTCTGCGCGCGAGTTGCAGCGCTGTCTGGCAAGCAGTCCCCACGCCGATAAAGTTCCCGCCCTCCTGGCGGAAGCCGATCGATTGTTGGGCGGTAAGGAGGTTAAACGATTGTCTGAAAGTTAGGGGCGCGGTGCGAATTTTGCGGGAGAGGGTAGGTGTAGAAATTGCCGCTTGGAAAAATTGGGCTGTAACCCAATAACGGTAAGGGTTTGATGCCGGCCAGGGAAATTAATCTCTCCCGCGATCGCTGAAAGCCTTGCTATATCTAGGTTTGCGAGGATAAAATTGGGGGTGAACTTGACAGGTCGAAGTCTGAAATGGTACTTTTAGGAAAGTCTCCCGGAACTGTACCTTGAAAAGTCCATATAGTAAGGGTTTCAGAACCAAGCG # Right flank : ACATATCAGCCGTCTGATGTGTCTAGGTTCGATTCGTCGCAAACGATCGAGATCGCGCTCTATAATTGAGCTATATTGACGCAAATGAAGTCGGAATCTTTCGGAAACAATGCGAAAGATTTTTATCCGTCTGAATTAGTTATGCTGCTTGCAATGTTTGAGGTGTCGGTAACAGTCGTCCTTCTGCTTCATAACTTTCGATTAATAGAGCTAAAACCTCACGAGCGTTATTTAACGCTTCTTCATGAGTTTCTCCGTGAGTAAAATACCGCTGAATTTCTGTTGCAAATTCCGGCAGTTCTACAACATAGCAATTATCATCGTCCGACCAAATAATATCGATTCTGTACTTGAGTTTTTCCATTTTATTCTTTCTTCTTTACGCTCGATCGATTTGTTACAGTCGCAGTAGAAATGGTGTGTCACGGCACTACAGAGGAATGGCTTTTCATCATCGATTATCCATTATCAAACTGTTCGATCGCGCGGGCATTTTCCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACAAACATTAATCCCTATCAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 60038-59433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSM010000015.1 Oscillatoria sp. FACHB-1406 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 60037 37 100.0 31 ..................................... GCAACTCAACAGATAAGAGCCATTTCTTAGC 59969 37 100.0 33 ..................................... CGCTACAATTGGGCGGTCGGATTATACCAACAG 59899 37 100.0 35 ..................................... CTGAGTTCCGGACTGATTGTCCTGAGTTCCGGACG 59827 37 100.0 33 ..................................... CTTCGTAACTCCCGGCACTTCTTCGATGAAATC 59757 37 100.0 37 ..................................... ATCGGTTAAAGTTGCGACTTTGCGACCGAAAGGAAGC 59683 37 100.0 33 ..................................... GGTGGGAGGGATATTAATGGATACCCCAACACT 59613 37 100.0 34 ..................................... GATAACGACGGAAACCTATATCTAGAAGAAAAAG 59542 37 100.0 34 ..................................... GACGCAAAGAAGAATAGGCGATTTTTCATCAATT 59471 37 86.5 0 ...........................C....T.GGA | AT [59441] ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 98.5 34 GTTACAATCAATTCCAATACCTCTTAGGAATTGAAAC # Left flank : GTAAGTCTTTAGTCGATGCTGCCCCCGGACAACTGATTAGTCTCATCGAACAAAAGTCTAAGGTTGCTGGTGTAGAGTTTAAGCGCATTGAGAGCAAAAATAGTACAAAAGAATGCCCCGTTTGCGGAAACATCGTCGATATTACACTAGAAGAGCGTTGGTATCGCTGCGATCGCTGTAATTACGAGGAAGATCGCGATTGTAAAGCCGCGATCGTGTTGCTACAACGGGCTAAGTTTGACGATAAGTATATTTACTCGGAAAATTATGAAGATGCGGGAGGCAGGAGGTGTAAATGGAACGAACAAAACAAACAACCCTCAAAAGTCCGCAGAAAGCGGGTTACAGGCGATGATGCGTGAGATTGCCTCCCGCACCAGATGGGGTAAGGGTTTCAGCGATTTTCGTGCTAAACTGAAACTCTGGAATCCATTACCGATATGCAAGCCCCGGAACCAGAGGCTGAAAGCCTTACTGAGTCTTGGCTCTACAGCATAGCG # Right flank : TTGCGTTGCCTAGAATAAACTCTCCTAAATTATCAGGATATACGGTGCGTTACGCTTCGCTAACACACCCTACTGTATTGTTTAAGCTAAAATGAGGCTTTAGAAAAACTCTCGAAACCCCGATCGAGTAAGCAATAGAACGAGAAACCTATCGCACAGTTTTAGCTGAAACAATCCACTACGTTTTATGCTATGCAGCTTCACATCAATCTGGTATGACTTAAGAAAGAACAAATTGCCTGTAGAGACGTTGCAAGTCAACGTCTCTACAGATAACTTTGTAGGGTGAAGCAGCGCCACCAGCCTTAAAGCAGTGCCATTCTACCCTAATCCCTAATCCCCGACCCCCCCCTGCTAATCGAGCGAATTAAGCGCGATTTTCAACAGTTGCCGTCGCTGTCGCTAAGGCTTCGACTAAACTGCGGACGGCTGCAACCATTGCTACTTCGTCGCCGAGCTTGTTGATAGCCGAGCCAACGCCAACGCCGGAAGCGCCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATCAATTCCAATACCTCTTAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.40,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 52657-53482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSM010000014.1 Oscillatoria sp. FACHB-1406 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 52657 37 100.0 35 ..................................... ACCAAAACCGCCACCGCAGAAACTCCCCTCACCCA 52729 37 100.0 36 ..................................... GGGGGAGATTACCAATGCGGACGGAGCTTTTCCTCT 52802 37 100.0 34 ..................................... TCAGCGCCCGCAACTTTCCGCTCCCCCAGCAGGA 52873 37 100.0 33 ..................................... CGGGCAGATAATAATCGGCGACCTCTAAGAAAT 52943 37 100.0 36 ..................................... GCAACAGGGTTCTCCTTCCACGACGAAAATTGTTTC 53016 37 100.0 33 ..................................... GAGGAATTGTGCGATCGCCTCAATCAATTTTGG 53086 37 100.0 38 ..................................... TTTGAATAATAAATCGATTCGGGGGGACAACAATAAAG 53161 37 100.0 34 ..................................... GCTGAATACAGAGCAATTCGGCGCGTAGAAGGAA 53232 37 100.0 35 ..................................... TTTGAGGGCGCTCTCAAAGAGTATTATGAGCCTAA 53304 37 100.0 36 ..................................... TCACACCTCACGGTTAGCCGTCGCGTTGAACAGGCT 53377 37 100.0 32 ..................................... CTTTTTCATACCCTAGGCAAACTACCTTTTTT 53446 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 100.0 35 GTTGCAACTTCAATTAATCCCTATCAGGGATTGAAAC # Left flank : TGTCTTCCGGCTAACCTTAAACTGGCGCTGCTTTCGGAAAGTGGCGAAACGCTGAGAACGGTGGAATCGCGCCCGAGCGACAGCTACATTCAACTTCCTCGTTTTAAGTGCGCCAGCGGCTATCGGTTTAATTTACAAGTAACGCTCGATGAAATTAGCAATACCGAAGCTTTTGAGCTATAAAGGGATGGGATCGGACTTAGAGACTACGCGATCGAGTCAATCGAACCGACCGTATTTTTTTGATTATTGCCGGGAGAGTGAGGGTGTACAAATTGGCTCTCCGCTTTTGGAGCCTAGAACCGAGATGCTGTAAGCGTTTGATGCTCCTCACGCTCTTTTGAGTCTCCCGCGATCGCTAGGATACTTATTCTGTAAGGGTTTGAAGCGTTGTTGCTACCTCCCCAATTGACAAGCCAGAGGCTGAAATGGTACTTTAAGGGAAGTCTCCCGGAAGTGAACCTTGAAAACCAAAGACAGTAAGGGTTTCAGAGCTAGCG # Right flank : CGAGGCGATTTTTGTGACATACATTTAGGTCGTCAACTCAACTATCTTGGCTGGCTTTGTTGTTAGCAAATTGTCTGGTAGAGGTTCCAGCATTAAGGCGATTGCGTCTTGTAAGTTAGCGATCGCTTCTTCTTGTGTCTCACCGCAAGACGAGACAAAATTCAATTCAGGACAACTTGCAGAATTAAGACTGTGCCTCTTCATCCCAGTCTAGGATTGCTCCGATCATCATTTTTTTTCTGATGATGACGAATTGTTGACTACGGCTGATACCAATTGAATATGACGTTGCACAGAATCGACTCCCCTCAATTTTGGGTTAAATGGTGCGTTACGCTTCGCTAACGCACCGTTTCCTGAGAATTTAGGAGGGTTGATTCTAGGCAGCGCAATCTTATAATTGGTTCTAAACGCACAAAAGTCTTAGCTAATGGGCGCTGCCAACCTGACGAGACTCCGAACGTTATCAATTATCAATTATCAATTGTCAATTATCAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA //