Array 1 84-911 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGAP01000022.1 Neisseria meningitidis strain NmUS02x1 NODE_22_length_25245_cov_156.031_ID_56780, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 84 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 150 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 216 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 282 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 348 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 414 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 480 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 546 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 612 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 678 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 744 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 810 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 876 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : TTTCATATTAGGAGCTTATCAGGTTTTTTGATGATTTTGCTTCCTAAGCCCCTAATTTAATACGGCGACCATCTCGTGCCAAGG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 293-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGAP01000162.1 Neisseria meningitidis strain NmUS02x1 NODE_162_length_722_cov_164.894_ID_57060, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 292 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 226 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 160 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 94 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 99.3 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : CCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : TAATTTAGGGGCTTAGGAAGCAAAAATATTAAATTGGGTTATTTCGAAGCATCTTCATT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //