Array 1 173444-171707 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATM01000005.1 Bombella intestini strain R-52487 R-52487_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173443 29 100.0 32 ............................. ACAGTAGCGGCCATGAGCGGCTCTATCACCGC 173382 29 100.0 32 ............................. AGAGGGAGAAAATACTTACGATTACTCTTCTA 173321 29 100.0 32 ............................. GTCTATGACAGTGGGCGGGCCCTTGATGTTCT 173260 29 100.0 32 ............................. CAAAAAATGCGCAACGTAACGACAGCTGACAT 173199 29 100.0 32 ............................. GCAATTCAGACTAACGCCGCCTCTATTTCTAA 173138 29 100.0 32 ............................. TAGTACCGATTACAAACTGATGACCGATACAC 173077 29 100.0 32 ............................. GGCCGGAGAAACGCCCCAGATTCGGCGATTGA 173016 29 100.0 32 ............................. CCACAGCTATTACCGCTGCTTATACAGCCGCC 172955 29 100.0 32 ............................. TCTCATCCGTGCATAAGACGTTATAAATATTG 172894 29 100.0 32 ............................. CTAGGGCGGCCAAACTCTAAACTCATTGCCGG 172833 29 100.0 32 ............................. GCTAGAGAGCGTGCCAACAAACGTTTCTCTAC 172772 29 100.0 32 ............................. TATTGGGGACTATTTTGCGGAAACTAGGGGAA 172711 29 100.0 32 ............................. CATACGCAGAGGTCTGATCTGATTTACCAGAT 172650 29 100.0 32 ............................. TGGCTGTGCATCTGCCTAGTGCTGAAGGGGAT 172589 29 100.0 32 ............................. TATTTCCTTTTAGGGCGTTGTCAAAATTATAC 172528 29 100.0 32 ............................. AAATTCTGCTCCAGACCAAGAAACAGCCCCCA 172467 29 100.0 32 ............................. CAAAATCAACCCGCATTACCCGGCTCGGTTCA 172406 29 100.0 32 ............................. CCCGCACCGTCTGAGGGGACCGCTGGGCAGCT 172345 29 100.0 32 ............................. CTCAATTATGGTGTGCCTCGTGGAAAATCCAC 172284 29 100.0 32 ............................. CTCGGTAGCTTATTACAGGGGCCTCGCATCTC 172223 29 100.0 32 ............................. GAACGGGCCGGAACCCGGTCATTCCCGAACTC 172162 29 100.0 32 ............................. TCGCCACAGAAATCCCTTCCTGATCGCAACGA 172101 29 100.0 32 ............................. ACATAGCTGCAGCGGATAAAACGGCTGTTTTA 172040 29 100.0 32 ............................. CGCAGTGCCTATGACGATTTCGCACCGGCACC 171979 29 100.0 32 ............................. ATTGACCCGCCCCACGGGAACAAGTGCCACAT 171918 29 100.0 32 ............................. GTCAAGTAATTATCGAAATAATTATGAGGTAC 171857 29 96.6 32 ............................A TTGAGCCAGTAGAGACGTGGCGCAGCCGGATC 171796 29 100.0 32 ............................. GCCAGACGAATGTCATTCAGTCGCATCCAGTC 171735 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.9 32 CTGTTCCCCGCCCGTGCGGGGATGAACCG # Left flank : CTGCTGGAGAGGATTATTCCAACCATTGAGCATGTTCTATCTGCTGGCGGTCTGCCTCGGCCTGCACCGCCGCCAGAAGCTGTCCCTGTGGCGTTTGAGGATGAAGTCTTTGGGGACCCGGGGCATCGGTGATGTTTGTAGTTGTTGTTACAAATGCTCCGCCTCGTCTGCGTGGCCGTTTGGCGGCGTGGCTGGTAGAGATTCGGGCTGGTGTCTATGTGGGTAATTATTCCAAACGGACAAGGGAAATGATCTGGGAGCAGGTTCTCCTTGGGGTGGGGCCGTTGGGTGATGCTCTTATGGTTTGGCGCGCTTCTAATGATCAGGGCTATGAGTTTCGTACGGTTGGCCAGAACCGCCGGATGCCTGTAGATTTCGATGGATTGAAGCTAGTTTCTTTCTATTCAGAGTAGGAAGGGAGAGAAGATTAAAATATAATTTAAGTTGGTAGGATCTTTGACAACAAAAAAAGATATATCTTACAGTGCGTTATAGGAAGT # Right flank : GATAGGTGATGCGGCGGCGGGGCCTGCAACGAACCCCGCAATGCGCCACGTGGCGGGTAGCCACAGCTACGGCCTACAGATTATCACCGTGTCACGCCGCATCAGAGTTAGTGGATGCGAAGAGGCCAAAGAGACGTCAAGAGGCACATCTCATTGTTTTTCCTTACCACCGGTAAGACAAATCACCATACAAAGCCCGTCCGGGAGCGTAAGAACAGTTGGTCGTGCTGGTACATACGGAGACATATTTCGAGTTGGCAATGTTGGTGCCGTTTAGCTGGAGGTGCCAACGCCGGTAATCGAGATGCGCCTCAATATCGCCAACCAATTGGGAAGGAACGATGATGGTGTTGGGTAGGGCACCGGCTGTTGTGCTTGTATAGCGTAGGCCACCACCAATTCCGGCACTCAGGGAGTGTGTAAGGGCGAAACTGCGCCGCAAGAAGAAGGATGCCATGCGAGAGGGAACCGTTGTCGGGCGTTGGCCGACTTGGTTTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCCGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.00,-12.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77664-75926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATM01000004.1 Bombella intestini strain R-52487 R-52487_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77663 29 100.0 32 ............................. CTCAGGCTTTGGAGCAAATCTGCAACATCACC 77602 29 100.0 32 ............................. GCACATTTCCTGAAACAGGGAGGGAGCGTTTT 77541 29 100.0 32 ............................. TTTTCGGGCCCCAAATGCGCGACTACGTGCAG 77480 29 100.0 32 ............................. CAGTCCTCTGGCTATCAAATTGCTGCCTATAT 77419 29 100.0 32 ............................. GTAGCGGTTGTCTTCACTAATAAACTCATCAA 77358 29 96.6 32 ............................T ATCGTGCCCGATTCCAAACCTCACAGCAAAAC 77297 29 100.0 32 ............................. CCGGACATTGCCAGCCTGCCTTCCGGTGCGGA 77236 29 100.0 32 ............................. TAAGGGCTCTTAATCAATGGCTATGACTAATC 77175 29 100.0 32 ............................. AGTTGGAGTTTTTCCAAAAATATTACGAATAC 77114 29 100.0 32 ............................. CAGACAAATTGTTAAAATTGGTTTGCAACTGA 77053 29 100.0 32 ............................. TAACACCCTACGAATACTTGATTAGGGTCTAT 76992 29 100.0 32 ............................. GGTGTCGGTATTACCGATACCCTTCGAATCAA 76931 29 100.0 32 ............................. CCAAAATGAACAACGTAACGACAGCTGACATC 76870 29 96.6 32 ............................A GACCCTGGTGCCAAACCCCAGTGCGTTCTGGC 76809 29 100.0 32 ............................. GGCGTTATCAGCTAATTAACGCTGTCTTTACT 76748 29 100.0 32 ............................. GAATCGAAGATTTATATAGTCAATACTATTTC 76687 29 100.0 32 ............................. CTCAACAGATTTAAAAAGGTGCAGGGAGGAAC 76626 29 100.0 32 ............................. GAAGAGGATCGGGAGGAGATTGAGCCTAATGA 76565 29 100.0 32 ............................. CCAGCCCGCCACCACAGCCATTTTGGTCGAAC 76504 29 100.0 32 ............................. GAAGAATACGCCCTTCATCGAGTTGACGAAAA 76443 29 100.0 32 ............................. AGATGGTGGAGCGTGCCCGCCATATCCCTGCA 76382 29 100.0 32 ............................. CAGCCTCCCTGCGTGTAGGAAGTGGAGGTCAG 76321 29 100.0 32 ............................. TTCCCATGATCGTGACAGTACGAGGGCGGCCC 76260 29 100.0 32 ............................. CAGAATTATTTTTGATTTTTGTATTGCATCCT 76199 29 100.0 32 ............................. CGGTGCAGTGTGCGCCCCTCATGCTGGATTGT 76138 29 100.0 32 ............................. GGCCGGAATGTTGGATGAGAGGGAGCTGTGGA 76077 29 100.0 32 ............................. GCGAATATCGCCTCTGGTACCGGGAAACTAAA 76016 29 100.0 32 ............................. GGGGCCCTTCCACTCTACATTGTGCAGGGCAA 75955 29 89.7 0 ..............T........A.G... | G [75929] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.4 32 CTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : TATACTGCATGGCTCTCCTGCTGGAGCTGCTGCGTGGTAAGAACGAAAAGGGTGAGAAAATTGCGCTTCAAGAGCCTTTCTTGAGCGAGGATCAGTTGAAGATTGCTGCCTCTGATGATTTCTTAGAGTCGATCAATCTTCCGGCTTTTGATAGCTGGCGTGATCTTTTAACATCCGAGATTAAGAAAGAAATTGCCCATAATCGGGAGCTGATCCGTAAGGACGGTGTGCTGTCTAGCCTGCCTGTGTGATGCTACTTTGCATGACCGGTGTCTGAGTATGAGATAAAAAAAGGGAGGTTTAATCCTCCCTTTTTTATGTTCATGAGTTCTCTGTGGATAAAATTATTTTTTGCCTTGCCAGACTTATGATGTGAGAGGGTTTTTTATCTCATAATCAGAGAGGAAGGCTTGTGTTGGGGAAAGGATTAAAATTATATTTAAGTTGGTGGGTTCTTTGACAATAAAAAAAGACTTATATTACATATGGTTACAGGAAGT # Right flank : TGTTATTCACAGCATGCAGTTGCTTGCCCTTCAGAGGGGAAAACTTGCTAGTTGTGCTGTCGCCATAGCCATTCCAGAGCCTCAGGCAAAGTCTGCTCAATAGTGGGGGCGTCTACATGTTGGGCATTGCGGGAGAAAACGAACTGATAGTCATAGCCCTTGTTTCCCAGCACACGGGCCAGATTTTCGCCAGCTAATACCCAATCATGCATCCCATCTGGCATGGGGCGGACAGGGTAAAAGAGGTCCTGATCTCCCATTTCGTACCAGATATGTAGCGGGGCCCGTTGTGCGGCGGGTATGAGGGCAGCACCGGGCTGGGGTGGCACAGCGTGCGGTGTGCCTGCCCACGGGGAATGAAGCTGCCAACCGCCACCAGGCAGGGCTGGGTCATGCGGCCATTGCTGATTGACCAGAGATGGCGAATAGGCCAACACCCGGTGATAGAGATTCGGTCGAAACCATGCCATGGCAAAGGCCGCTGCCCCGCTGGAGCTAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 73-306 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATM01000002.1 Bombella intestini strain R-52487 R-52487_5, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 73 36 100.0 30 .................................... GGAAAAGCCCCCTGAAGGGCTGACACCATG 139 36 100.0 30 .................................... CTCTCTCTGCATGATGGCGTGCAACTCTTT 205 36 100.0 30 .................................... GTCAGGCGATGATAGGCGCAATAGACTATA 271 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GCCGTGGTTTCCCTACCGATTTGCCTATGGTAGGTT # Left flank : GAAGCATCAGAGTATTTAGCTTAGAGTTGCTTATGGTAGGTTAACTCTCCACCTTGATCGAAGCGGAAAGTTG # Right flank : TAGCTCTTGCGTAACAGATTGATGTTGCATGATTTTTCATTGTTTTTACGATCGAAAATCATAGCAACACCATCTGTTTCGTGCCTATTCCTTCGGTTTTTTTTGCAAGGCCGAGCATAATCTCCATCCTTCCATACTGTTTGTCCGTTACTTGCAAAGCTCGGACGCTTCCTTCTTTAGGGAGGGCGGTCCGAACCCGGCGTAAATGTTTATCGAGACTGTCTTGTCCCCGTCCGACACGAACATAGACGGAATATTGTAGCATGATGAATCCATCATCACGTAGGAAATTACGAAACTGCGCTGCCTGCCGCCTTTGAATTTTGGTGCGGACGGGGAGGTCGAAAAAGATTATTAGCCACAAGAATCGGGTCTCCTCTGCTTTCATGAGCTACCCCCAGTGATGCAGACAGGCAGGCGCAGTAAGGCAGCACTGTTATGTTCAAGGGCTTTAACCAGGTTAGAGGCAACAATTTCAGTCGCCGCAAGAATGGTCATGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGTTTCCCTACCGATTTGCCTATGGTAGGTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //