Array 1 218-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGRK01000077.1 Azospirillum sp. Sp 7 Contig29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 217 33 97.0 36 A................................ CATCCCCTCTCAGTACAAGATCGTCCAGCTCACGGC 148 33 100.0 34 ................................. AGGAAGGTGTGCACGCTCGCCCCAACGCACGTCA 81 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 99.0 36 CGTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Left flank : CCTGGATGGCTACCCGCCATTTCTATGGAAGTGAATCCCCATGCTGATGCTCATCACCTACGATGTGAACACCCAGGATGCATCCGGGCGCCGCCGGCTGCGCCGGGTTGCCAGAGCCTGTCAGGATTTTGGGCAAAGGGTTCAGTTCTCGGTTTTCGAATGCGACGTCGACCCGGCACAATGGGCCGTTCTGCGTGCCCGTTTGATCGGAGAAATCAATCAAGAGACGGACAGTCTCCGCTTCTATCATCTCGGAGCCAACGCGGCCCGCCGCATCGAGCATGTGGGCGCCAAACCGGTGCTGGATCTCGGTGGCGCATTGATCTTTTGATCGGTGCGAACCGGAAGCGGACACGAAACCCCCGAGGGGTTCGCACGTCATTCTCATCAATGACTTGTGCGGCTCCGACACCGGAATGACTGCTTCCGCGGCCGCTTCCGAAGTAGGTTCGCATCCGTCGGGGGATTGTGGGTTCTTGAACAAGTGCATAAAGATGAGG # Right flank : CTGCTGCCAGCGTGGGCATGGCACGTTTCGGCGCGGTCGCCCTCTGTGC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : NA // Array 2 9702-10203 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGRK01000077.1 Azospirillum sp. Sp 7 Contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 9702 32 100.0 34 ................................ AGCGAAAACTGGTTCCGCAGTCCAAACTCGGACG 9768 32 100.0 35 ................................ GCCAGGACCTCGCCGACAATCGGGTGGCCGAGATC 9835 32 100.0 35 ................................ TGCCCCATGAAGATGGGCTCCAGGGCGGGCTTGAG 9902 32 100.0 37 ................................ AGCACGAAGGCCGCCGGCTCGGCGATGCCGACATGCG 9971 32 100.0 35 ................................ CCGCTGGCGTCCAGTGCCTCAAGCCAGTAGTAGCG 10038 32 100.0 35 ................................ TCGACGACCTCGATGGCCGGTTTGAAGCCGTCCTC 10105 32 100.0 35 ................................ CGTCCGCGTCCGCTTGGTCAGAGCGGGCGCGGCGG 10172 32 96.9 0 ....................C........... | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 99.6 35 GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Left flank : TCGTGCGCCAAGGTCCGCTTGCCTCGGCCGGAGCGGCAGTCGAGGCATGGCCTCCTCCCAACGGAATGGACAGCGGTTCGGGCGGTCGTTCGCTCGGCCCGTTAAGGACTTTTGTTCGGGAGAGGGGTGCGGTTGAGTGTCGGAAGAGGATAAGGATCGTCGTAATCGTCAAGGCTGAGGAACGGGTTCCGCTTTCCCCATCTGGGAGCACATGGCGCCCGCCGATGTGCAAACGGTGGGCGGAACACTGATCGGTGTCGAGGCGGCCTGCCGTATCGAGCACAGGGTGTCAAACCGGTGCTGGATTTCGGCGACGCGTTGGTTTTTAAATCGGTGCGAACCGGAAGCGGACATGAAACCCCCGAGGGGTTCGCACATCATTCTCATCAATGACTTGTACGGTTCCGACATCGAGATGGCCGCTTCTCGATTCGCTCCCGATGGAGGTTCGCGCCCGTTGGGGGATTATGGGTTGTTGAACAAGTGCATAAAGATGAGGA # Right flank : CAGATTATTACTATTTCGAATGCTTTGAATCGGGCCATCTTTATCATAGAACCCAAGTCACGCTAGTTCGGATGGACCCTGATTTCTCAGAACATCAACAAAGACTGCCCAAGCGTGACCCGACATAAGCGGCTTCGTCACTGGGAGATGGCCCTGACGGCGAAGTTTTGACGGAGCAGCACCATGGGGCCGATCCCGCAGCCCCGATCGATTGTCCTGCCCTCGCGCCGGTTCTATTCATAAACGGCGTTTCTGACATCGGTCGGAAACGCCCCAGCCATGCCTTCGAACGCGGTGTTTGTCAGGGCAACCACCGAGAGGCCGTTCTTGCGGTCGATGAACCAGGAATGGCCGTAGGCACCGCCCCATTGCAGCGTGCCAGCGGCCTGCGGTGTGCCCGTCAATGCCGGATCGTCCAGCACCGCCCAGCCATAGCCGAAGCCCCAACCCGGCCCCTGCGTTTGCGCCGTCGCGCCGACCTGATCATGGACCATCAGCCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 1 72926-72091 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGRK01000018.1 Azospirillum sp. Sp 7 Contig34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 72925 32 100.0 35 ................................ TGGCGCTCGGTCGATCCATGGCGGTAGACCCGCAT 72858 32 100.0 35 ................................ TTGCGGCAAATGTCAGCGAGCTTCGTCATGGGCGC 72791 32 100.0 36 ................................ GCTAACCACTATCGAAACTCTAGCTTCACGGCGGTC 72723 32 100.0 34 ................................ ACAAGTCCGGCCTCATGAAGTCCTGGGGCGGCCT 72657 32 100.0 35 ................................ CCTCCTCATCTGGCCCCTCAGGCGAGGATGGCGCG 72590 32 100.0 36 ................................ ACGATCCTGTGGGGGCGGGAGTGGCCGCGGAGTTTC 72522 32 100.0 34 ................................ ACGCTCCAGGCCGGGGACAGCCTGGGCACCGGAC 72456 32 100.0 34 ................................ CGGGCTGGCCGGGGCGGCGTGTTGCTCGGCAGCG 72390 32 100.0 36 ................................ AGTGCGGTCGCGATGCTCGACGCCACGCCGTTGAGG 72322 32 100.0 35 ................................ ACCGTCGTGTGGATGGACTTCGACGCCGCCAAGGC 72255 32 96.9 34 .........C...................... ACCTTCCACACAGCGGCCTGCTTCCAGGCGTCGT 72189 32 96.9 35 .........C...................... GCCACCTGCACCGGGTCCGTGCTGGACTTCACAAC 72122 32 96.9 0 .........C...................... | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 99.3 35 GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Left flank : GTGGATTGAAACTGCTGCCAGCGTGGGCATGGCACGTTTCGGCGC # Right flank : TTGTAGCGGTGGGCCTCGTCGACGAACAGGCAGTAGTCGCCCTTCGTGCGAGGGCTGCTTCCTCAAGCCGAATCGCTCCTGTTGTGAAAATCGGTTCATGACGGCTCGGGGAAATTCAGCGTTCCCAGGGCATCGGCAGGTTCAGTCTATCTGTAACTTGATACGGGTGTATTGAGTCATGGTTGGGCTAAACCTGTTGATGTTTTAAATAGGTTAAGTTGGACCGACTTTTGACGGTACTGTTTCCATAATAAATCTTAAGACAAATGGGCCGTCACTGCTCAATTATTATCACTGCTTCGGGTGAAGGCTCACGATGTGCTGCGGCGGTTTGGTTCTGCCCGGTTTAGGTGTGGGCGGGGCGCCATCCGTCTGCTAAGGAAGAGGGTGCGGCCGCCAGCCGCGGGTGACGAGAATGCGAAGGGCGGGAAGCGCGTGTTCGTTGATAGCTTTATGAATGACCGATGCCTCTCATGCGCTGATGTCCGGTCCGTCCATGG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //