Array 1 257-1015 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPRF01000001.1 Sulfolobus acidocaldarius strain GG12-C01-04 GG12_C01_04_scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================================================ ================== 257 25 100.0 76 ......................... CTNGTTCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACCA 358 25 100.0 39 ......................... CTCTGTTCACAGAAATATTTGTCAAGCTCAATCTTAAAG 422 25 100.0 42 ......................... AGTTTTGGGAACACTTCTCTTCCCTTTATCTGTTAGTTCATA 489 25 100.0 39 ......................... CTCAAATCGTTTGCGTACTGTTTAAAGCTTTTTAAACTC 553 25 100.0 37 ......................... AGCACCCTATTTTCAGGTGCTGGCTGACTAGAACTTT 615 25 100.0 38 ......................... GGGTATAAATAAAGTATGCCAGCCTGTGCTAATGACAG 678 25 100.0 36 ......................... AGTTTATTATGTCATTGGACAGCAAGTCATACGAGA 739 25 100.0 41 ......................... TTTTCTCCTTTTTTCATAATACTTCTTTCCATATTTCCGCA 805 25 100.0 37 ......................... GCTCTGCTAACATTAGCCTCTTCTCCTGCTAGAGCTA 867 25 100.0 38 ......................... ATCTTGTCGCTTATGTGAACGTCTAGGGAGTCGATAAT 930 25 100.0 36 ......................... CCAAACCAAGTTAGGTTTTATGTTGAAGGGGACTCT 991 25 96.0 0 ..............A.......... | ========== ====== ====== ====== ========================= ============================================================================ ================== 12 25 99.7 42 GATGAATCCCAAAAGGGATTGAAAG # Left flank : ACTCTTTTCTTCGATCTTTTCATGAAGTTTATAAATGTTGTTTTTCGAGTCTCAATGCGACCCATCCCAACTTAGTTACAACCCCTCAACATTTATAAATACACAACCATCTTTCAACTCTAGTTAAGCACCATGCGACCAAAAAACCTAAACACAATTACTAGGACTTAAGGTCGCATTAAAGTTCCCCATAAAACACCTAAAATTTAAATACAAGGAAAGGGAAAAATAAGACAAGGGATATAAAAACAAACCAG # Right flank : GACGGCAATTATGGTTATATCATAATGATAATGCTAAGTCGAGCGTATTAGACTAGTTATATCTAAGGGATGCGCTTTACTCACAGGTAGTATAGGAGTAGTGTAGACTTGGAGGAGGAATAACGCCATTTATTAGCTCTACCTCCACAATAGTTTAATGCAGCAATAATGTCGTCTCTGGACAATCAATATAGATCTAGAATTGCTAGGAAGGGGTGCGTTTTCGTAAGCTATACTTCTCCTCACACGCACGTTAGTGTCTGTACTGAATTACAAGAAGATCTTCTACTTTAACGGCACAACACAGAGCTCTAAGCGATAAAAAAATTAATAATGAAATAAATATAAAATTAAGTATGAAAGATGGGAAAAAGATAGCATTCGTTAAGGACCACGGGGCTCACCTGAGGGTCAACAAGGGAATGATAGAGTGCTCAGTTAAAGATGAGGTCAAGTGGTCTGTGTCTCCTTCAGAGTTGTCCTCGATCGTCGTGATCTCA # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.27, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGAATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 40413-40690 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPRF01000001.1 Sulfolobus acidocaldarius strain GG12-C01-04 GG12_C01_04_scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 40413 25 100.0 37 ......................... CATATCATCATCTCTCATCATCTGCCTGCAACGTATC 40475 25 100.0 36 ......................... TCACATTCATCCCTATAGACATTTATTGAAAACGAG 40536 25 100.0 41 ......................... TTTGCTTTAACATAGATCGGTGAAAGCATCTCAAAAGGTAG 40602 25 100.0 39 ......................... TAAGTATATATCATTTGAATGAATGTTGAGAGCCACATT 40666 25 76.0 0 T..A.G.........AA......G. | ========== ====== ====== ====== ========================= ========================================= ================== 5 25 95.2 38 GAAGAATCCCATAAGGGATTGAAAG # Left flank : TGCCGATTCCCCTCTTGTTTTGGTACATCGAGGGAAATTTTCATGTAGGAGAGATTAAGTTTCCTTCTAAATACTTTTCAGTAATAGAGGTTGTTTAATTTTAGATAAAAGAAGGGAATTTATAAATTTATTTATAAACACTACTATGAACGTCTTTTGAAAAATTATACTATGAGCAAAGAAAATTATGAAAAACTTTTCAAGGTGACCTTACGATTTAAGTAGTTAATACTAGGTGTAATCTTACCATAATTTTCGATTTCGTCATAAGGTTTATAAACGTCATTTTTCGAGTCTCAATGCAACCTATCCCAACTTAGTCACAACCCCTTAACATTTATAAATGCACAACCATCTTTCAACTCTAGTTAAGCACTATGCGACCAAAAGACCTAAACATAATTACTAGGATTCAAGGTCGCATGATTAAGTTAGGGGCTTAAGCAAAAGTTTATTAACAAGAACGTCAAATTTAGGATAAGGGAATAATAAATACATCA # Right flank : GCCGTATTCATTTTTATATAGAACTTTAATTATTGAGTAGAAGAGGTCAGTAATGAACATTTTAACTATTTACTTTCCCATTTCTCTACGGAGAAGTTCATTAAGAACTTTGATGATAAGAAAAGGACTCTATTATAATGAAGTAAAAAGTGTTTAAGTCAAGCAAGTGAAGCATAGGTACTAAGAGAGTCCTTTAAAATTTTATAGGGTATATCCCCATGAAGTATCTACTTATCATATTCGATAACGTAATCGAGAGGCGTGTTAAGGGCGTATAAGTTATGCAGGATTGAAATACGCTCAATTCTTGCATCATGTATAGGCTATAACAGAGAGCTGGTCATGAAGAGTTTTAAGAGAAACTCTTTCTTTAGATAGAGAATCACTTTAGGAGCCCTCATACCCTTTTATCTAGTTGAGACATAGGAAGAAACTAGTGAAGATAAGTGTAGATATTTTTCTAAGTCAAGTAACCTCGCAAGATGCCGTGATCTTTAGGT # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCCCATAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 3 156234-151543 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPRF01000001.1 Sulfolobus acidocaldarius strain GG12-C01-04 GG12_C01_04_scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 156233 24 100.0 38 ........................ CTCTAAGAGGATCTTTGCCAGGGCATAGTAATAAGCTG 156171 24 100.0 35 ........................ GAGTTCAAATAGAATAATGGAACTGAAGATACATT 156112 24 100.0 36 ........................ GAAGCAGAAATTCGATGAGGCATTAAACGCATTAAA 156052 24 100.0 38 ........................ AACAGCATTAATATTCCGAGGAGGATTGCTAAACCGTT 155990 24 100.0 36 ........................ ATCTTCTCTGTCCTCTACTACTTTCTGCTCTTCTTT 155930 24 100.0 36 ........................ TGAAAAGTTCATAAAAAAGTACCCTAACGTAGAACA 155870 24 100.0 34 ........................ AATTTTATGATATCGCTTTTGTTCAAGGAAACAT 155812 24 100.0 39 ........................ AATTCTAAGTGCACAAGAAGGACTAGAAGAGGCAGGCCT 155749 24 100.0 34 ........................ TAATGCCCAGTAACATAGATGCCTCCTTGATTAT 155691 24 100.0 35 ........................ AATTTGGATTGACGTCACCTCAAGATCTATTACCT 155632 24 100.0 36 ........................ ATATTTAAGCCTTACTCTTTACATTAAAAGTAACAA 155572 24 100.0 35 ........................ TCGACGTTAGTCTTAGATTTTTATCATTTTTAGGT 155513 24 100.0 34 ........................ TTGTGCTCTTTAATGTCAAACAGTGTGATCTATT 155455 24 100.0 35 ........................ ACAGTGCATGAAGTAGCATCATATGTCGTAAGTGA 155396 24 100.0 36 ........................ TCTCTGGGTTAAGTGCAAAGAGCACTGGGATTACAA 155336 24 100.0 34 ........................ CAACAAGGCTGAGAAGATAGCAAAGAAGCTAGTA 155278 24 100.0 38 ........................ TACAATAATTTCAGATTTCCAGTAAATGATACAAATTC 155216 24 100.0 36 ........................ TTGTCATTAAACTGACAACTTTGTCTCTGACCCAAA 155156 24 100.0 34 ........................ AGTAGCGGTATACAAAAATGTATTTGTTGTGATA 155098 24 100.0 34 ........................ TGGCTCACAGGCATTAATACCTGCAAAGCCTAGG 155040 24 100.0 39 ........................ AAAAGTTTGCCAATTTAGGTGCTGTGCAGGAAGCATTTA 154977 24 100.0 34 ........................ GAATAATTGTAGATCAGCCATCAACTTCCACACG 154919 24 100.0 36 ........................ AGAAAATGAGTAGTGAGATAAAGACAAAAAATAAGT 154859 24 100.0 39 ........................ AATTTCTATATAATCCAAGAGACACAGAGAGGTTTCTAC 154796 24 100.0 37 ........................ TACATTACTTTTAGAAATATAGTATGAGCGTAACATA 154735 24 100.0 33 ........................ CAGTACACAAAGTGGATAGGAAAAGTCAACAAT 154678 24 100.0 36 ........................ ATCGTATATTATATTGGGGCAGAAAAAATGAATGAT 154618 24 100.0 34 ........................ CAGGTTCAATTTCAGTAAATAATGGCATTACAAT 154560 24 100.0 38 ........................ AACATCAGACTTTTGCACTTTTATTAGAAGGCTTTGGA 154498 24 100.0 34 ........................ GATACATTGCATATATTGGCAATCAGCAATACAA 154440 24 100.0 36 ........................ ACTATATATTGTTTGGAGCTTATCATAAACTTCATC 154380 24 100.0 34 ........................ CTGAATAGAGAGATGATAGAAGAAACGGTAAGTA 154322 24 100.0 39 ........................ TCAGCCTCTAATTCTGCTGCAACTTCCATCAATTTCCTT 154259 24 100.0 39 ........................ ATTAATTCCAAAGGACATTGAGAAGAAATTTGGCTTAAA 154196 24 100.0 37 ........................ ATATGAGCAACAGCAACTCAAATCTTTATATGAAGTC 154135 24 100.0 34 ........................ CACCAAAGAGTTTTTGTCCAAAGCCTTTTATGGA 154077 24 100.0 37 ........................ CAGTCTCAATGTCTTTATGAGACAATTCTATATCCAA 154016 24 100.0 36 ........................ GCACTTCTACTTGCTTAACGCTATAGCAAGCAAGAA 153956 24 100.0 38 ........................ GTTCATCAACCTCATGCTGAGTAAGACTATTAGTATGT 153894 24 100.0 36 ........................ CTCGTATTCGTAAAAGCCCTCGTGGGTGGTGACGAT 153834 24 95.8 35 .......................A CTTTACAACTAATTTTTTCAGGAAAACAAATTGAA 153775 24 100.0 34 ........................ TATGTCTTAGATAGTTGAAAAAGCTAAAGCTTTT 153717 24 100.0 36 ........................ GAATGTGTCCCCCTAGAGGTTTTCACCAAACAACCA 153657 24 100.0 36 ........................ AAAAAACCTTTAACCTCTATCGAATGCTGTCAAAAA 153597 24 100.0 35 ........................ AACGTTACGACCACTACTACTCAGAAGAAGATAGT 153538 24 100.0 37 ........................ GAGGGATGAAGGCAAATCAGTATCAGCAATAGTAGAG 153477 24 100.0 35 ........................ GAAGTAGAACAGCTGTTTTTCAGGATTGAAATTAT 153418 24 100.0 39 ........................ AAGAGAATACTTTCTCGCCTCAGCAAGAATCGTATCAAT 153355 24 100.0 35 ........................ GTATGTGGGAGAGCTTTATGAGTGGTAAGACACAC 153296 24 100.0 33 ........................ ATGCAGGTACTATACTGAGCCTGATGAACAGCA 153239 24 100.0 34 ........................ AAATTTAAGGAAAATGGAGTGTATGTATATAAAT 153181 24 100.0 35 ........................ CTCAATTATTTTCAATGCTTTTTCTTTTTCGTTGT 153122 24 100.0 36 ........................ ACATCAGCACTTATGGATACTACGCCATGCTCATCT 153062 24 100.0 35 ........................ ACTATTACTTTTGAAAATATGTAGATAAGACTGGT 153003 24 100.0 34 ........................ TTACAGTTGTTCCGTTAGGAAGTATATAGTTACT 152945 24 100.0 37 ........................ AAAATAATCATAAAACCCGAGCATTACGAAGAATTGA 152884 24 95.8 37 .......T................ TGTAAAGGACTTCTTAAAAAGGTTAGAGGGGTTTCTC 152823 24 95.8 35 .......T................ GTAATTATTCTGATGGGTGCTATAATCTCGATGGC 152764 24 100.0 35 ........................ AGCGATTAGTTTAGTCGAATTAGCTATTGCGACTT 152705 24 95.8 34 ...........G............ ATGGGATCCTGATAATTCGGCATCAGCACAATTC 152647 24 100.0 35 ........................ CTCTTCATTTGTCTCGTGAAATATAGGGTTTTTCA 152588 24 95.8 35 ...........G............ ATAGGGTAGTTCACAAAGAGCCAGCCCTCGTCAAC 152529 24 100.0 35 ........................ CTTTACGTAGTAGTTATAGAGCTTCGTTACGTGCT 152470 24 100.0 38 ........................ CTTGAACCATTGAACCTGCGATTGCAGGGATTAAGTAT 152408 24 100.0 36 ........................ GCTGACTGGGGGTGAGCCAGAAATGAAGACTGGAAG 152348 24 100.0 36 ........................ TAAAATTAGTCTGCTGGCCAATTAAGAACAAACTCT 152288 24 100.0 35 ........................ GTGCAACAGGGTGAAACATAGATGAGCACATTTTT 152229 24 100.0 35 ........................ ATTATGCTCATTATCTCTGATTTCGACCTTAAAGC 152170 24 100.0 37 ........................ CTACATTGTCCTGAAGTCCTAACTTCTTTAATTCCTT 152109 24 100.0 39 ........................ TTTTTATTTTCAGTAGCTATCACCATAGTAGCCCTAAAA 152046 24 100.0 37 ........................ TACTCCCCAGGCTTACCCAGCAAGAAGAGGAAGCCTT 151985 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 151926 24 100.0 35 ........................ TAGGAGGAAAATATAGGAATATAAAGATAGTACTA 151867 24 100.0 36 ........................ CATTTTAGCTCAAGCATCACCAGCATCAATTGAAAG 151807 24 100.0 36 ........................ ACCGTTCCGTAGATATTATTACTGTAACTCCCTCCC 151747 24 100.0 37 ........................ ACTGGGCTCCCCGTGATCACTCCAGGTCCTTATGTTG 151686 24 100.0 36 ........................ GACGCTAAAAAGCAAGAACAACAATCACAACAATCG 151626 24 100.0 36 ........................ TTTCTTAGTGAATCCCATGTACGTATATCTAATTTA 151566 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 79 24 99.7 36 GTAATAACGACAAGAAACTAAAAC # Left flank : ATCACTTAGAGTATAAAACTTCCTCCTCACGTTCACTAAAGAGTTCAAGAACGGCGACACTAGGACCACATCGTTTCTCTTTCCGTGGACGAGAACTGGTATATTTAGACTGGAAAGGAACAAGATCACCTCTGATGTTAGCCTAACATTATTACCGACAATGACCACTAACTCTAGGTCCAGACTAGACACAGTTAAGTTCTTTCCAACGGACCATGTCATCTGAAGATCTGAGCCTTTCCTCATAATTGTAGCGTTTTTAATCACTAGAATGGACATAATAGAAATTTTTCTCTCAAAAATAATAAACTTTTATCATAATTAATAAATTTTGGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGCACCCCAGGGAACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGAAGCCAACGATCA # Right flank : ACTGTAACTATTTAAAATAGAATGATGAGAGAATGACAAAGCCTTGCCGTTTATGGCGAGGTAAAGGTTTCTACTTACGAGAGAAAAGTTGTTATTAAGAGGAAGCCCGTAAGAGCATGGGTCAGTCAGTGTGTGTCCCTCTTTCCTGGTACATATCCCTGAGTCTCGAGGAGCGTGGAGTTAGGGCAACTCCACCAAAGGGATAGGGGTTGAGTGGCTGAAGGCTCAGCCAGTGGTCTACCACTGAAAGAGTGGAGCGGAGCGGGCTTCTGAGCCCACTAGCTATGAAGTGATAAAAGTGAAGGTGATAAACTACAGACCTGTGAACTGCCCTAGGTAACCCTCACTCTTTAGAGCGAGGAGGAAGTCAGTATCACACCAGATGCTGTGATGTCTGTTGCAACCTTAATTGCAATTGTATCCGACGAGACTGTCATGGGAATCATTCAAACTTAGAATACATAGATCCTCAATTCATCCTCTCCAATCATATGTCTAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 168601-176768 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPRF01000001.1 Sulfolobus acidocaldarius strain GG12-C01-04 GG12_C01_04_scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 168601 24 100.0 35 ........................ AGCTCTTTCGCACTGTTATTTTACAATTTACACGT 168660 24 100.0 34 ........................ GCTTGTTGATTTGGGCCCATGCGAGGAGGATTAA 168718 24 100.0 38 ........................ TGATATTGTATCGTTGTAGTTAGTATTGTCCAGAAGAA 168780 24 100.0 37 ........................ AAGAACTCCCGGGAGCCCTGGTGGTATGCCCGAAATT 168841 24 100.0 38 ........................ ATCGTAAGAGAAGTGGGCTAGCGCTACCCTCCTCCACT 168903 24 100.0 38 ........................ AGAAAATATCTCAAGGAGGGCGAGGAAGTATGCGAAAG 168965 24 100.0 32 ........................ TGGATGCTGAGTTAACTCCCCAGTTTACCGTA 169021 24 100.0 39 ........................ TTTTAGCCTGACCATTTCCCTCGTTAAAAAATAAGGAAA 169084 24 100.0 34 ........................ TTTCACGCTCCATGACCTCAGTGAATATCTCATT 169142 24 100.0 37 ........................ TCATAGGGGCTATATTCAACAATACGTTGCTCCAGTT 169203 24 100.0 42 ........................ GAGAAGAAGCAAAGCATACCGCTCTACAAGGTTCCTTCAGTT 169269 24 100.0 36 ........................ TATGTCGATCTGTCCGGTGTGCTGGTGGGCGAGCAT 169329 24 100.0 39 ........................ AAATAGTGGTTTCCAAGACTGTGCAAATGCTTTTTTATA 169392 24 100.0 35 ........................ TTTTAGCTGTTTCTCCATTCCGTCCCACCAACTAT 169451 24 100.0 36 ........................ TAAAATATTTTAATGTTCCGGAGATAGATTATAACT 169511 24 100.0 35 ........................ TGATATTTGGAGTGGTCGTGATTTTAATGGGAGCT 169570 24 100.0 35 ........................ ATTAACTACATCGCTAACAGCTTGGTACAGCCTGT 169629 24 100.0 36 ........................ AACAAAAAAATGAAGTTTTGGGTTATGACTTTCTAC 169689 24 100.0 37 ........................ TAGAGGCACAATTACAGAATTTAGTAATTGATCAAAG 169750 24 100.0 37 ........................ TGAATTCTGCCTTTTTATATAACGCATTACTGTGATC 169811 24 100.0 35 ........................ TTTGAGACGCTGAAAGACGTAGCGAAAGACTCTGC 169870 24 100.0 34 ........................ ATTAAAATGCTGTAGAAACACTTGACCAAATATA 169928 24 100.0 38 ........................ TAAAGGGATCCTGACCTAAGGACTATCGGGCTTACTTT 169990 24 100.0 35 ........................ ACTATCTCAGCTATCGTCACTATCGACATCTTCAC 170049 24 100.0 34 ........................ CATTTTATTTATATAGCCTCGTTGTATAGCTTCT 170107 24 100.0 35 ........................ ACTGCTAAAGAGCGCAGGTATTGCGCAAGACTACA 170166 24 100.0 36 ........................ ATAATATACGACGCTCTGGTTAGGTAAAGGTACTCT 170226 24 100.0 35 ........................ AAAATTTCATTCTAAAGAGATAACAGATTTGGGCT 170285 24 100.0 35 ........................ AGTGAATGCTTGTCCTGAGCCTAGTCTGTTTAACG 170344 24 100.0 35 ........................ ACATTTGCTGGAGTTCAGAAAATATCAGTAACCAA 170403 24 100.0 36 ........................ AAAGTTGTTTCAGCCCCATCTTCAATAAGTGAAGGT 170463 24 100.0 36 ........................ AACATAAAAAACACTGCTAGTTTCTATCTGATTAAT 170523 24 100.0 36 ........................ ATAGATAAAATAAATAGTTAATGTTTCATAAAATCT 170583 24 100.0 36 ........................ AACAACGTGATGATACTGACATTTGCGGGCTATTGT 170643 24 100.0 34 ........................ GCTGTTCATATAACTGTAATAAATTAAGAAACTT 170701 24 100.0 34 ........................ AACTCTTGAATTGTTAAGTCTTTAATGAATGCAT 170759 24 100.0 34 ........................ AATGTACACCGTAGCCATTTTTTTGCACTTCTTT 170817 24 100.0 35 ........................ AAGAACAGCGATGTTTACAAGTCAGCACAAGACGT 170876 24 100.0 35 ........................ CATTTTCTTGGTTTTATCTATTTACCGTTTTAAAC 170935 24 100.0 37 ........................ CTAGATTGTTAGCACCGTGCATTAGCAATAATGCGTT 170996 24 100.0 34 ........................ GATTGCTGATGACGATGGAATAGTTACCACAAGC 171054 24 100.0 35 ........................ TTTTATTTTCACCGACAAAACGAAAAAAATTGAAT 171113 24 100.0 35 ........................ TTAAAGAGGCAACAAAGCGAAAAATTCTATATGCC 171172 24 100.0 35 ........................ TTGTTGTGCTAACTGGTTTATCGCATCCCCTATTC 171231 24 100.0 35 ........................ TTATGTTATTTGTACAAACTTCTTAGTTGCCAATT 171290 24 100.0 36 ........................ TTCTTGTAGTTTCGGGAAGACATTCTCACTGGTGTA 171350 24 100.0 39 ........................ TAGTAGTAGTTAATACTGCTGACTGAATTTTTCTTAGTT 171413 24 100.0 35 ........................ TTTATTTCAAAAAGTTACACTATAAAGATGAATTA 171472 24 100.0 34 ........................ TTGGGTAAGATCTAGACCTTATGTTCCTCTTTCT 171530 24 100.0 33 ........................ TTGGGATATATTGCACAGACAAACTTTGTCTCC 171587 24 100.0 40 ........................ ATGTTAGGAATATTGTTAAAAATCCGCCTATAATTCCGAT 171651 24 100.0 34 ........................ ATTTTTTATGCCATACCAACCCATTTTAATCAAA 171709 24 100.0 34 ........................ CAGTATATGCGTGTTGATGATTTTCTGAAGACTT 171767 24 100.0 34 ........................ ATAGCAAAGTACGAATAATCTATATTCCTGACCT 171825 24 100.0 34 ........................ ATATCTCATGGTTATGTTTCTTCAGATCCAGGCT 171883 24 100.0 35 ........................ GCGGCAGCTACTGGGTCTAACGCCTTCCACTCGAT 171942 24 100.0 35 ........................ ACATAAGCCAGCTAAAGAAGACGTATCTGACTGAG 172001 24 100.0 37 ........................ ATTATAAGTAAGGGCTGACTTGTTGAGTAAGACTGGT 172062 24 100.0 37 ........................ ATGATTATGAAATTTGTACAGCAAATGTTGATGAGAA 172123 24 100.0 36 ........................ AATGTCTTTTTTTATATAAATTTTTCGAGTCCTAAT 172183 24 100.0 35 ........................ AGGGAAAAGATCCTCTTCCTAGCTCCTTTCTCTTG 172242 24 100.0 36 ........................ CCTGTACAACGAAAACGGGACATTGTGGGCAATACA 172302 24 100.0 36 ........................ CTCGACCTCTTCTACTACTTCTGGTGGTGCACCCAT 172362 24 100.0 41 ........................ TTAATTAAAGCGGCAAGCTCTCTAGCCAGGCTAGATCCCTT 172427 24 100.0 36 ........................ AAAACAATGTTTTAGTTTTACAGACATTATAAAATT 172487 24 100.0 36 ........................ ACTTCAAGAATGGAATACATTTGTTAAAAATTTGCT 172547 24 100.0 34 ........................ GCCCAAGCTCAGGCTGGAAACAGTGGAAATCCGC 172605 24 100.0 35 ........................ ATATAACAAAGCGCATTGCTGATACGTTACACAGA 172664 24 100.0 34 ........................ TCCATGCCCTCGCCCCCGCCTTTTCTTTTTCTTT 172722 24 100.0 35 ........................ TTCCACATTGATGAGGTAAGCCTCTGAAAAGGTTT 172781 24 100.0 36 ........................ TGTGACCAAATTGAGGCAGAAGTATCCGCAGGGGAA 172841 24 100.0 36 ........................ ACCCCTGACTTTGTCCTTAAAGATAATGAGTTCTTT 172901 24 100.0 38 ........................ AGAAAATGAGTAGTGAAGTTAAGACAAAAAATAAGTCA 172963 24 100.0 38 ........................ TTCACTGTCAAATTTGTCTAGCAGTTCTTTTGCGACTT 173025 24 100.0 35 ........................ ATTATACCACGCCAAAGAGATGGCGTGAGGCGATA 173084 24 100.0 34 ........................ TATTTGAAGGCTTCCCTTAGGGCGTTCTTTAGCG 173142 24 100.0 35 ........................ GTTAAATTCGGCGCCCCAGTAGAAGTCTTTCTCGC 173201 24 100.0 38 ........................ CTATGTGTTGATGAGAGCACAGCTGGGCATGGAGCGTA 173263 24 100.0 35 ........................ AGATGTAGAGAAAACGATCGATTTAAGGCATGCGA 173322 24 100.0 35 ........................ AATAAATCAATCCTTTTTTTAAGGTCTTTCCAAGA 173381 24 100.0 40 ........................ TCAACACAAGGAAACACTTACAATTGGTATGAGTATGAAG 173445 24 100.0 34 ........................ CACTAGACACTGCAGGGACAGATATCAAAAACTT 173503 24 100.0 37 ........................ GTGCCCCTGTCTCCTGCAGTTTTAACGCTAAATATCT 173564 24 100.0 36 ........................ ACCTATCACTTTCCTTGCGAATTCAACCAGTGTTAA 173624 24 100.0 37 ........................ CACCAGCTGTGATGACATAGTCTTTGTCCAGTAATGG 173685 24 100.0 34 ........................ TTCTTCATAAGGATGTATCTGTACCAGTTCACCA 173743 24 100.0 36 ........................ GTCTTTACAGAACTTGGGGCGAAGTAGTATCCCGCA 173803 24 100.0 37 ........................ GATGAACTCGCCTGTGTTACTTGATGTGTATAAGGAA 173864 24 100.0 36 ........................ AACTCTGAGACTGAGGTTCTTTTTGTCTCACTAGAT 173924 24 100.0 35 ........................ ATAGGCTAGAAGCTGCAAAGAGGCTGGGCTGGAAA 173983 24 100.0 34 ........................ TACTGCAAGATCTACATTATAGTTCAATGATTTT 174041 24 100.0 37 ........................ ACGAGTCTCTTTATCAATATAGTGATGTTATCTACAT 174102 24 100.0 36 ........................ TTTTTTGCTTTTAGCTTTTCGTATTCTATTAATGAT 174162 24 100.0 37 ........................ AGTGGCTTAATGTACCTTTTGGTACTGACTATCCAAT 174223 24 100.0 34 ........................ GCTGATAGATAAAGATAAAATAAAAATAGACTTT 174281 24 100.0 37 ........................ GTCTACTTTAAGTGAACTTTATTGTAATCGTATCAAA 174342 24 100.0 33 ........................ TAAGCGTCTAAATAAGTTACCGACAATTGTTAT 174399 24 100.0 35 ........................ ATTGTTGAGAGATGCTACTTATGAAGAAAATGGAA 174458 24 100.0 38 ........................ CTTCATAACTCAACAAAACAAATAAGGTATGCCACTCT 174520 24 100.0 37 ........................ CTTAGCGTAAGAGAGCGTATATTATGCAGCGTATATT 174581 24 100.0 37 ........................ AATTTTCAGAGTCACTTACTTGGAAATTTTGTCTCTC 174642 24 100.0 36 ........................ CAAAAACTGCCGTTTAATGCGCCACTTCTAGAACAA 174702 24 100.0 35 ........................ TTTTGAGAATAGAGTCTATGAAATCTCCTTTTATT 174761 24 100.0 36 ........................ AGGTTCACTCACCCTCGCCTCGCAAGATATTCCAAA 174821 24 100.0 39 ........................ ACAATTCTTTCTTTTTTTATAGCTGTTGTACACATTCCT 174884 24 100.0 35 ........................ TAGTAATATCTAGCGACTTCCATAATTGCTGATGC 174943 24 100.0 35 ........................ ATTATAAAATTGATGTATTATACATTTGCAGAAAT 175002 24 100.0 39 ........................ CGCTATTCTCAAGTACTCTGCGATCTCGCCCTCTGAAAG 175065 24 100.0 38 ........................ TTCATATCGCTCTTTTGAATACTTCATCAATTCTTGTT 175127 24 100.0 34 ........................ TTTTATATTCTGTTGTTCATTTTTTATATCATTT 175185 24 100.0 35 ........................ ATATTATTAGGAATGACAGCCGGAGCTACTACTGT 175244 24 100.0 35 ........................ TTGTACAAAAAAGCTGAATTTAAGCAAGTCGGAAT 175303 24 100.0 36 ........................ ATTTAGTTTGAATATTATGAGTAATTGAGAGTTGGT 175363 24 100.0 37 ........................ TTGCTACAGGAAATGGAGAAGGTGAATATCAGGGAGG 175424 24 100.0 38 ........................ TTTTATCTTCAAAGAGTTGAAAAAGAGAGGGTTAGATA 175486 24 100.0 37 ........................ CTTTCTTCTTCATCTTTATCGATCAAAATTAGCCTTA 175547 24 95.8 37 .C...................... TTTATTATCAAGAGCATTAAGTAATTTTGGAAGACCG 175608 24 100.0 37 ........................ TAATAACTCTCCTACCTTTTCTATTTTTAGCATTTGG 175669 24 100.0 37 ........................ TATTTCGTAATCTTCTATAAGTTTTGAGTTGAATGGC 175730 24 100.0 34 ........................ GTATAGTACTGGTGTATTACTTCCAGATATCCCT 175788 24 100.0 35 ........................ CACTCTCTTCAATCCGATTATATCAATTTACTACA 175847 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 175908 24 100.0 36 ........................ GTTGTAGTCATTCCAGTAATGACTAAGATATTGTGT 175968 24 100.0 37 ........................ TGTAATACAATATTACGCTAGCAATACAACAAACATA 176029 24 100.0 35 ........................ ACACTCGCCGACTCTCTCTCATTTATTGCGAGATA 176088 24 100.0 35 ........................ GTGTTGTTCGAGACTTCTACTGCCATTAATATTAG 176147 24 100.0 36 ........................ GATTACTTTATGCTTTATTCAAATATAGAATAAAAA 176207 24 100.0 35 ........................ GTTGGGTATTTAAGCTTACGCATTATATTTTTGAG 176266 24 100.0 37 ........................ GATTACTGCAGTGATGATGAAATATCGTGCTAATGAT 176327 24 100.0 34 ........................ TAATATAGCGACCACAGAACTCTTGCTATATTTC 176385 24 100.0 35 ........................ CTCTCAAGAAATTCCAAAAGTTTATCAAACTCCTC 176444 24 100.0 37 ........................ TTTCTACATTATGTACTACCGATAAAACATGTGATCA 176505 24 100.0 37 ........................ TTCTCTTGGTTCAAAACCACTTAAATCTTCGTTATTT 176566 24 100.0 36 ........................ TTTTCATCAACATCTTGACTCCGGTATTCGACATCA 176626 24 100.0 35 ........................ AGTGGTCAGGGCTAGATATCTGCCCACTACCAACT 176685 24 100.0 36 ........................ TATCAAGAAAAATAGGGCTAGCCCAATTCCAATGAT 176745 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 137 24 100.0 36 GTAATAACGACAAGAAACTAAAAC # Left flank : TGTCTTTACATTCATATGTGGAATTATTTTTGAACAATTTAATATGTTGTAGGGCTTGGGATCTCATGAACAGTTACAGTAGGTGAGCCTCTACACTTACTTCATTGAAGTTTGTCCACTGCGTTAAAAAGTGTAATATATAAAAATTTTTAAGTTACAAATATACCTTTAAAAATTTTTAATTTTATTACATGCCTAGATAATTAAAAGTAAGAGCTTCATTGAGTCTAGTAGTAAACTGTCTAAAATTCATAGAATTTTATTATACACTTATTAGTCTACCAGGAGAACATCGAAGAAATTCATGGATAAACATAAAAAAAGAAATGGAAGTGGTATTATGTTATTTCCTTCCGTATCCTTACGTAAAATGGTTTTAGGGTTACCCTGTGTAGCCTAAAACTCCCTTCCGTACCTAAGGGCACAAAATTGACAATGAAGGAGAGAAAATATTTATAAACCAGGAAATAAGAATGTAAAATTGATGGAGGCAAGGATCA # Right flank : CTCCATGTAAAATATCATGACACATATATTAATTTTGAAGCAAAATTTTACGTCCCAAATGTTATCGCTTATGTAGGGTTATAACGTGTCCCTTGTGTGGTTATGAGAATCAGTACTCATACAAAGTTGATTACCATATTGATCCAATCTCGGCGGAGGGGGAGTCTGCAACGTTAAATGTTCCCTCCTTCAACTCTGCTGTAACAAATAAGGAAAAAGTTTTTATTCTCTCAATATTTTGATTTAGTTTATGAGGATAATTGACGAGACTAATTGACATAGTGAAGAGTAATCCGAAGATTCTCCTGTATTTGCTGCTTCCAGCGTATGTACCCATTTTTCTCACCGTTATAGCCATTATTGAAGCGTTGACGGCAGTCCCTCATTTAAGTGAAGTAACGCCTTTACTAATTATCACACCTATAATAACTGTGTTCTTCGTTCCCGCAATAGCATTCTCGTTGTACCCAAATCTACCTCTGGAGGTGGTAAGAACTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAACGACAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //