Array 1 25535-26282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTX01000012.1 Bifidobacterium subtile DSM 20096 contig12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 25535 31 100.0 35 ............................... CCCTATGCAAGCAGCGGGCAACACGTACATCACGC 25601 31 100.0 35 ............................... CGGCTCGCGCCATACGCGCTCGAACTGGTAGTCGT 25667 31 100.0 34 ............................... ATCGTCTGTCTCCTTGGTTGACGGAGATCAGGTT 25732 31 100.0 33 ............................... CGATAATCCCGAATCGGCTGAAGCGATGGACAC 25796 31 100.0 34 ............................... ATCATTGAGCGCGAGAAGACATTTAGAAGTGCAT 25861 31 100.0 34 ............................... CCTTATGCTCTTCGCCAGCCGAACAGGCTGACGT 25926 31 100.0 35 ............................... TGGTTCCGCTGATACGCGGGTTCGCTCGTGCTCCA 25992 31 100.0 35 ............................... TTGTTGCCATACGGAAGGATGTACGCCTGTCCCAG 26058 31 100.0 34 ............................... CCGCGTCGTCATGCTCGAATGAGACGTCGATGGA 26123 31 100.0 33 ............................... GATCCGATTGCGTCTATTGGCTCTCCGGCCTGG 26187 31 100.0 34 ............................... TGATACTGATAAGGAATGATGTCCGCATCCGCAG 26252 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 12 31 100.0 34 GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Left flank : GACGACTTCGTCAGGTCGCTAAAACATGCAAGAAGTATGGGCAGCGTGTGCAGAACAGTGTTTTCGAATGTTCTGTGACGCCCTCGGATTTTCTGACACTTAAACATGATTTGCACAAACTCGCCGATTTGGAGTCGGATAGTCTGCGGTTCTACAATCTTGGAGCGAACTACTCGAATCGGATTGAACACATGGGAGTGCAACGGCATCTGCCCGATGATAGTGTCATGATGGTGTAGGTGATCGGTTTGGCTAATCGATGATGGACTATAAGGGGGTTTGTGTCCCTGTGCGAGAGTGAAGCGCTCATGGATTCCCTGGAGGTTCGCACCTGATGTCAGGCTACGGTTCGCGGGAAACAAAGAATTTTCAGTGGCAATAGGGTCATCTGATTGTTGTCTGATAACGTAAGAGTGCTTTAAGTGCGGGTTTGTATGGACTTGTTCTCATTTTTGATATAGTTAAGTTCGCATGGTGGGATATTGGATTCCATTTGTGCG # Right flank : GCTGCCAACTGAGTATTGTTTGTGTGTCCATATGTTTTTAGTCAAGTTGGTTTTTTGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 58-1588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDTX01000052.1 Bifidobacterium subtile DSM 20096 contig52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 58 31 100.0 35 ............................... TCCAAGCAGGCGAAGGATGCTACGGGCGGAATCGG 124 31 100.0 33 ............................... CTTGCCGTGGGGCAAGAGACGGCCGCATGAACA 188 31 100.0 34 ............................... ACGCAGTGGGAGGCGCAGTTGCAGGTTACGTTCG 253 31 100.0 35 ............................... ATCGGCCTTTGGTCGTATGTCGATGACAATGGCGT 319 31 100.0 35 ............................... TCGACGGTTTCGCCCGGACGCGGCAACGGCTTCGG 385 31 100.0 34 ............................... TCGACGCTCTCAACAACAAATAAGGAGTAATCCC 450 31 100.0 34 ............................... TTCCAGAGTCTGTGGAATGGCATTGTAGGGTTTT 515 31 100.0 34 ............................... GATGCGACCATGTTGCACTTGTTCCAGGCCGTCC 580 31 93.5 34 .....................AA........ CTTGACTTGACCGTCATCGATGATGATCGCTCCG 645 31 100.0 34 ............................... CCATTGCTCCTATGCCGTCATCTTCTCGGTCGTT 710 31 100.0 34 ............................... AGGAACAGGCCGGTGTGATCCAGAAACTCGAACA 775 31 100.0 33 ............................... CACTCGCTCGTATTGTCCTTCGAATCGGTGAGG 839 31 100.0 34 ............................... CGTAACCCCCGCTCGGCCTCGGCAAGCCTGTCTC 904 31 100.0 34 ............................... ATCGGATCGAGGACTGAGCATGGCTGTGAAACGC 969 31 100.0 34 ............................... CATGGAGCAGAGGAACGCCGCGCTGCAGACCATC 1034 31 100.0 35 ............................... ATCGACCGTTGCATACGCCTGTGGAGCAATAAGGG 1100 31 100.0 33 ............................... CATCATGCTGCGCCTGCTCTCCGCAGGCTCGGG 1164 31 100.0 36 ............................... GAAAACTATCCGAACGCGATCTACCAGCGGATCAAA 1231 31 100.0 34 ............................... ACTCCCGCGAAGGTGGTGGACAAGTGAATGTCAG 1296 31 100.0 34 ............................... GCATCGGCAGCATCAGCCTTGTCCTGCGCGGATG 1361 31 100.0 35 ............................... AGGCTCATGCGCTCATCGAGCGAACTGGCGAACAG 1427 31 100.0 36 ............................... TATTCTGCGAATACGGGCGTGATCATCAAAACTCTG 1494 31 100.0 34 ............................... GACGAGTTGAAGGAGAAGGCCGCGAAAACGGATG 1559 30 93.5 0 ...................A..........- | ========== ====== ====== ====== =============================== ==================================== ================== 24 31 99.5 34 GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Left flank : CTCACGGGAGCGTGGATTGAAATCAGTACATGCTCTCCGACCACAAGGGGAGCGAGCG # Right flank : | # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //