Array 1 6470-8151 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDAN010000039.1 Streptococcus lutetiensis strain PA11535C2 KS8_NODE_39_length_8218_cov_55.0618_ID_2096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 6470 36 100.0 30 .................................... TGATTTCAGCTTTTGAAAGTCGTCTTGACC 6536 36 100.0 30 .................................... GCTACTGGTGGCGGATTTAGCTTAACTACA 6602 36 100.0 30 .................................... CTGTTTTATAGCATTTTAAATTATAACTTT 6668 36 100.0 30 .................................... CTTAATCAGCGAATTAATTTCTGGGAAAGG 6734 36 100.0 30 .................................... TGTTGGTCTATTTAACAATTCTTCACCACA 6800 36 100.0 30 .................................... ATGCTGTTGCGCATCCGGTCGACACGCTGG 6866 36 100.0 30 .................................... ACATACGGCAAGTTATTATAAATTCAATAA 6932 36 100.0 29 .................................... CCTCTCAACTACTTATGTATCTATTATAC 6997 36 100.0 30 .................................... CTCTTATCACGCTTGTTATTAGCAAGCTTG 7063 36 100.0 30 .................................... TGATTATATTGAAAGTCAAATGAATCAATT 7129 36 100.0 30 .................................... AAGGTGCCCCAGGGAAACCAGGTGCTGACG 7195 36 100.0 30 .................................... TTACATTGAAATTTTCAGACCGCAAAAATT 7261 36 100.0 30 .................................... AAGACGTTTGCGAAAAATTAACGGAGAAAC 7327 36 100.0 30 .................................... ATCTAGCAAAATTTGATTTTCGTCTTTCAA 7393 36 100.0 29 .................................... TTAATTTTACACGTTACGTAATTTTACAA 7458 36 100.0 29 .................................... TTACTTGTAACCTTTATTTTCTAATATTA 7523 36 100.0 30 .................................... AAGCACTATTTGCTGAAAGACAAAGGCAAG 7589 36 100.0 30 .................................... ACGATGCTAAAGCTAATCTTGAGAATTATG 7655 36 100.0 30 .................................... GGGCTTATCGCTAGGCTGCATTAGACAAAA 7721 36 100.0 30 .................................... GTCCTTCATTTACGACTGTTCCTTTAGAAT 7787 36 100.0 30 .................................... AAGTTGACGAAGCAGATGGTTACACCGCAC 7853 36 100.0 30 .................................... TGCACAGGCCTGGCGGGCTGTTTTTATCAA 7919 36 100.0 30 .................................... GGTTGATGGTGTTGAGATTAAATTAACAGA 7985 36 100.0 30 .................................... AATAAATAGGAGATACTATCGTGTAAATGA 8051 36 100.0 31 .................................... GTTAACGGCAAACCAGACGTATTTGCCGGGG 8118 34 80.6 0 ......................--C...ACC...C. | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 99.3 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : ATGGATGATTACCTTGATTATGCCTCATTTATAAGAATTTGTCAGGTTATCACAAGAATGGCTGATGAGTTTCCAAATTTTTATTGTACGATTTTTCCGTCAAACGAAAGCTACTTGTATGTGACTAAAGAAACAATAGAAAATATTACCATTGTTTCAGATTATATTGAATCTTTGTTTGATCTTGATTTTATGTATGAAAGGTTTGTTGGAAGATATCCATCCAACAATGTACCAACAAAAAAAGAATTTTTAATTCTTTTACAGAAGAATGCAAGTTATTTATTTAGTGAGCAAATTTCATATGTGAGTTTAGGAATTTCGGATATGGTAGCTATCAAGATACTAAATAGTTTATATCACTATGATAAGTCAGTTAAATATCCAATTTCAGAGATAAATCAGCTTGAAATAAGCTTTCTTAAGGATAAAGATTGACTTTTAGGCTCAATGAAATTATAATTCTTGTAGAGTATAAAGACCCAAAATGACGATTTGAG # Right flank : CCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGTGATGAGTTGAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 55035-54141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDAN010000003.1 Streptococcus lutetiensis strain PA11535C2 KS8_NODE_3_length_107423_cov_423.008_ID_4191, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 55034 36 100.0 30 .................................... TGGTTTCTAAAAACGGTGTATATGAACTCG 54968 36 100.0 30 .................................... GATGTGCTGGAGGGTTTTGTTGATTGGACG 54902 36 100.0 30 .................................... TCGAAGAAGGTCTAATTCAAGTTGACCCTC 54836 36 100.0 30 .................................... AAATGCGTTTAAGATTGTCATATTTTTCCT 54770 36 100.0 30 .................................... ACAAAGGCAAGGGCGCAATCGGGGATTTCT 54704 36 100.0 30 .................................... TTTTATTAAATAAGTTTTTCGTTTTCAACA 54638 36 100.0 30 .................................... ACGTGGATAACGACAGACCCATTCCCAAGT 54572 36 100.0 30 .................................... CAGACCGCATTTCATTCCAAAGTGGTGGTT 54506 36 100.0 30 .................................... GAATTTTCTTTGCTTTGACATTCGCCAAAC 54440 36 100.0 30 .................................... TGTTGCTAATGTCGATTATGACAAAGTCTT 54374 36 100.0 30 .................................... CATTGGCAGAATATTATAATATGAGTGTAG 54308 36 100.0 30 .................................... TGCCAGCTACAATGTTTGCTCCAGAGAATC 54242 36 100.0 30 .................................... AAGCTTTAGATAACATGATAAAAGCCATTA 54176 36 97.2 0 .........A.......................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.8 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCATTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGGTTTGGGGAATAAAATAATTAAGTATGGAATTATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : TGTGGCTACTAAATATGAATACACCAAACCCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGTGATGAGTTGAGTTTTTATTACCTTTGGTTAAATAATAGCGCTTTCTGCAAAACTTGTAAAATGATTTGTGGTAGCTGATTTTAGCGATATTTATCGCGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAACTACACAGCTAAAGATGGTGAAACTTACAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 57064-55637 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDAN010000003.1 Streptococcus lutetiensis strain PA11535C2 KS8_NODE_3_length_107423_cov_423.008_ID_4191, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 57063 36 100.0 31 .................................... CTTCGAGATTCCCAACATAAGCCGCCACTGT 56996 36 100.0 30 .................................... ACCTCACTCGTTATCTGTAATCGTTACAGG 56930 36 100.0 30 .................................... AGGAAATACTTGTCGTCTACATTTTCCTCT 56864 36 100.0 30 .................................... AGGCTGAAGGAAGAGAGAGCGAAGTAAATG 56798 36 100.0 29 .................................... CGATCTATATGTTGAACTAATTTCAACGA 56733 36 100.0 30 .................................... ACGAGAGCTTTTCGCGGAAAGAACCTAGAA 56667 36 100.0 29 .................................... AACAATTAAATACAACGAAGTTGATTGGC 56602 36 100.0 30 .................................... TTACTTGTACTTCTCCACGCAGAACTATTA 56536 36 100.0 30 .................................... ACGCTACAGTGTATGAAGACCCTAAAATGA 56470 36 100.0 30 .................................... ATAATGAAAGTCAATACACCATCAATTACT 56404 36 100.0 30 .................................... CGTTCTGGCTGTAAGCTAGCCTTTCGCTAT 56338 36 100.0 30 .................................... TAATCTGTTAGCATCATTTGCTGAAACGTG 56272 36 100.0 29 .................................... AAGAGCGGTGCGATATTACGGTAAAGGTG 56207 36 100.0 30 .................................... GCGCGTAATCATCCGCGAATTCATTGCGTC 56141 36 100.0 30 .................................... ATCCTTATCGATTTCCTTATTCCCACGCCA 56075 36 100.0 30 .................................... CCTTGAAATACTGACTTTATCTAATACTGG 56009 36 97.2 30 ..............................T..... TAACTATCCCAGAATGGTTAAACGAACTCG 55943 36 97.2 30 ......A............................. AACTAAAGCAGATTATATTTTAGAAGAACT 55877 36 100.0 31 .................................... TGTAAGTTTTCATATAAAAGAACAATTGTCT 55810 36 100.0 30 .................................... TCAAACGTCTTGAAGAAGAGATGACGGACC 55744 36 100.0 30 .................................... CCTTAATCTAATAAACTATAAAATTATCTA 55678 36 88.9 0 ....................T...AAA......... | T,AAT,C,A [55642,55644,55649,55651] ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.2 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTCACAAAGAAGAAGGTGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGAAACTGAGGGTAAAGATATCGAGGAAGCTATGAAGAATGCACGTGAAATGCTTGAGAGTTCGTTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGTTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACGGTAGCAGAATGGTTAGTCAGATTAGCTGACTGTGAGCAGGTAAACTATTCTGAGGTTTTAACAAAAGATTTGGAGAAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGTTTTTAAGGTATAATAAAACTAACATTATGGAGCTGTTCGAGACTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAGATTTCGTGAGAAAAATTGGTCCACGAG # Right flank : TGTAGTAAAAATTACTTTCAATGTTTTTCAAAAGTTTCCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTAGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGATCGTCCATTCTTCCCATTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTAATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCGCCAGCTGAAGGTGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATTGCCCTTTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //