Array 1 132021-131561 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003709.1 Zymomonas mobilis subsp. mobilis NRRL B-12526 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 132020 28 100.0 33 ............................ TAATTTGAAATTGTTAAAGAATCTAATAACGCT 131959 28 100.0 32 ............................ TCCCTGCCGCATCATATGACCGCTGCCCATAT 131899 28 100.0 33 ............................ AAACAACAGATCAGCCAGATCACCGCATATCAG 131838 28 100.0 32 ............................ AGCGTGCTTTTGTCGATGCTTTAATCGATTGG 131778 28 100.0 32 ............................ AGTAACCATATCCCATAAGCTAATAGACGATG 131718 28 100.0 32 ............................ GGATTGTGGGCATGGGGCAATCATCAGCATAC 131658 28 100.0 43 ............................ TGCTAGAGCAAATTCAGGCAATGTTGGCCGAAATGCGGATGAA 131587 27 82.1 0 ....................-..GCTT. | ========== ====== ====== ====== ============================ =========================================== ================== 8 28 97.8 34 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTGGATTAGACACCGCTGTATATTTTGAAGCATAGCCGAAATTGAGTTTAATTTTGGCCTGTTGCTGCATGGCTGCCTTTGTAAGCCGTTTTAACCGCGGATAATGCGCGATATCCTATTTTCTGACGTTGGCATCCTTATGGCCGAGTGAAGGTCTTGGAATGGATGCGTTTAGTTTTCAGCCCTAGCATAGCGAAGATAGACGGTAATAAGAGCCATTCAATGCTGCACATCGCCGAAAATTGGTCGAGAGAATAGCGGTGTGTATTAGCCTTGAGTATGGATTTTCTTATTAGCATGGCCTAAAGAATTGATGGCTTTTTGATATTGTGAAGACTCTTGCGGGATCAGATTTGACCCTTATTTTGACCCTCTTTTTTCGAGGGTATAAAAAATCCTTTCAATTCAATATGTTACATATGGGCGTATTTTTTAGGGTTATTTTGCCTTTTTGGCGAGATATCCCTTTATTTTAGGGGCAATTCTATCTTTTGCCTCTA # Right flank : GAATTTATTGTATTGGGGTGGTTTTAAAGAGGGCATAAAGCCCTCTTTTTTTAAGATTTTTATTGAAAAAACGGTTTGTTTTTTATTGGGGATTAGTCTTCTGCAACGACGAGGTCGGTCTCTTTTTTACGGCGTTTTTCGCCAAAAAGCATAGCGAGCAAGGCCATTTCATAAAGCAGGATCAGAGGCACCCCAAGCAATAATTGTGAAACGATATCAGGCGGGGTTAAAACCGCAGCGATGGCCACAGAGGCGACGATCGCATAGCGACGGCCTGCAACCAATTGTTGGCGGGTAACAAAGCCTGCCCGTTCCAGCAGCAGCAGCACGAGGGGCAGAAGAAAAGCGACACCAAAGCCGAAGATGAATTTTGTCACAAAATTCAGGTAATTACCGACTGCGGGTAGCGCCATTTGCTGCACGCCGCCAATATTGCCTTGATAGCCGAGCAGAAAATGAAGGGCGATGGGCATGGCGACATAATAGGCCATAGAGGCACC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1254478-1254790 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003709.1 Zymomonas mobilis subsp. mobilis NRRL B-12526 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1254478 28 100.0 33 ............................ GAACAGAAGGATTTTTGCCCGGGACAAAATTTT 1254539 28 100.0 32 ............................ TACCCCAGCTTTGCGCTTTAGCGTTGCGGTAA 1254599 28 100.0 32 ............................ AGAAACTCCAAGAAGAGATCGCAACCGAGCGA 1254659 28 100.0 32 ............................ GATTAAAAAGACACGATATGCGATGTGGCCTA 1254719 27 89.3 17 .....................A.-C... TTATCAAAACCGATGCC Deletion [1254763] 1254763 28 67.9 0 .A...TAT..C..........C.TC..C | ========== ====== ====== ====== ============================ ================================= ================== 6 28 92.9 29 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGGTGCGTCTGGCTTATATCTTAAACCATCGCCTGCGCTCTATTCCGCTTTCCTATTTTCTTCAGGCACAAAAACAGGACGCCGCCGCCAATAATAACGGATAACTAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCTCAAAGGCTCGGCGAGCCGCCTAATCTACATCAGGAGAAATAGCCAATATATTTCTGGATATATTGGCTATTTTCTTCAAAAAGAAAAAACGCTATCAAAGACAACACTGCTTTTTGATATTGTAAAGAATACACCGCCTCAATTTTTGCCCCTAATTTGACCATCTTTTTTCGAGACATTTAAAAATCGTTTAAAATCAACAGCTTAAAAGCAAGCCTCTTTTTTAGGGTCATTTTGCTTATTTGGCATAATATCCCTTTATTTTAGGGAGATTTCTATAAATCTCTTCTA # Right flank : CATAAAAACATTTAAAAACAAATACTTAACCACCAACATATTACACCCTTTAAAAAATATTATACATTTTTTCAAAGATTTAGGTTGACGAAAGCCAAAAATCCGCGCATTTGCGCTTGAGGTGGCTCGATGGCGGAGTGGTTACGCAGAGGACTGCAAATCCTTGCACGCCGGTTCGATTCCGGCTCGGGCCTCCAGATTTCTTTTTATCGGCTGAAGGCAAACGGCCTCACCCCGCCGATATCTCCTAAATTTATCCTCCTAATAGATACATCCTGCCATAATGGGACAGCTGTCAGCTATCCCCTCAACACCACCGTTCTATTTCAAAACATTCTTTTCGCTTTTCTTTTCACTATCCCGATACCCCTCATATCCTCTCTTTTCATCGCTTCGATCGCCCTCTTTTGATATAGATGCGAAACCACTATATTACGTCTTCACAGGCTGGCGATATGGCCAAAACACAGTCCACAAGCCATCCGTCTGTTCACGACCTC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1807859-1807531 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP003709.1 Zymomonas mobilis subsp. mobilis NRRL B-12526 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1807858 28 100.0 33 ............................ TGTTGAGCTGCGACGTTATGCTGAAAAATTGGC 1807797 28 100.0 32 ............................ AATGCTCAAGCAAAGCCAGCAATGTCACAAGA 1807737 28 100.0 32 ............................ ACCTTGCTTGTCAGTGACGATAATATTACCTT 1807677 28 100.0 32 ............................ TACTCGGATCATGGTATCCGGCCCGACTGTCG 1807617 28 100.0 32 ............................ TGATCGTCGCAGAGTTATTATCGAAGACACGC 1807557 27 78.6 0 .............T...T..A..-.T.C | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATCCGAACAGGTGGCTATCGCCTAATCGCTCAAATATATTGAGATTTGAAAGAGGGAGTCCGTGAAAAGGCTCCCTTTTTTATTGATGATTATTGACGAGAAGTAAGTTTTAAGCGGCCAATTTTAGGCTTTTTTCTATTCTAGAAGTCGAGATAAAAAGGCCTATTCCTTTTGCAGAGGAGACAGTGAGAATGAGGTTTTTATTGGTCAATCGGAATAATTATGATCGGTAGAATATGGGGTAAATAAATAACCTAATTTCATTCTTGCCATAATTTCCGATCGTTTCCTTTTGTAAAAGCCAAAAGAAGCGTTAAGATCGCGATCTGTTTTTTGACATCGTGAAGTCTTTTTGACCCTTTATTTGACCCTCTTTTTTGGGCATGTAAAAAAATCCTTTAAAATCAATAGGTTAAAAATAGGCTCTATTTTTAGGGTTATTTGGCTATTTTTGCCCGATATTCCTTTCATTTAGGGGAGTTTTTAATTATTTACTCTA # Right flank : TTATTTAAGTGTTGTTTTGTTTCATGGTTGGGGAATGTTTTATCGAAGGCTATTCTGTTCTCAAAATATGTCGCTGTTACTTCTTTTTCTTCTCTGTTTTCTCTTTTTAGTTATTCCGACCAGAATAGGATTATTTGTGGTTTCAAAATAGCGGTTAAAAAGTAACGCTTGCTCCGTCATTTTGAGTTATTGGCGGAATCTGTTTTTCATTTCTTTTTATGGCTCTTATGAAAATAGAGAAATGTATTTTTCTTATTTTCTATTTTGTTAGAAAATTTTTTATTCATTTTATTGAAATGATATTTTAACCATAAGAAGCCTATGACCCATCGACCTCTTTCCGATCAAATTGCCCTTGTCACCGGTGCCAGTCGCGGGATTGGTGCGGCAACCGCCAAAGCGTTGGCTGAAGCGGGGGCGCATGTCATTCTGGTTGCGAGAACGGCAACCGATCTCGATAAAGTCGAAGAACAGATTTATCAAAAAGGCGGATCAGCGAC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //