Array 1 223018-222528 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOS010000002.1 Enterococcus raffinosus strain N17 No17_ctg002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 223017 30 100.0 36 .............................. TTTTATAACATGCCGGTTCCGTATCTTAGTGATTAT 222951 30 100.0 36 .............................. TTTGGTCTGTAATGAGCAAAGGTATCAGGCAATTCA 222885 30 100.0 36 .............................. ATGACAATTATTGCTTCCGCTCTTAAGGCAGCCACG 222819 30 100.0 36 .............................. TCGAATCTGTCTATTGAAGTTTAATCGCTCAATTTT 222753 30 100.0 35 .............................. ACCCTTGAATTCTAACCAATCCTTCTTTCGTTAGC 222688 30 100.0 35 .............................. GAAGTTGACGAGGAAAAAAACAAACTCCAGGAAAT 222623 30 100.0 36 .............................. CAGTGAGGATTTCATCACTTGAAGACATTTCATCAA 222557 30 96.7 0 ...............C.............. | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 99.6 36 AATCAAAGTCTAAAATAGTGGAATGTAAAT # Left flank : TTATTCTAAAAGTTAGGGAAGTGGATATGGATGATTTTGAAGGAGAGCTATTTGAACTGTCCGCGGAGTGTCGGTACACCTGGGAATCACTTCTTAATAAAGCGACTAACCAAGAACAAGAAGAGATGCATTCTTGGTTTAAATCACAGCTAGCTCACGGTAAGTACTATTTTGGTTATGGAGAAATTGAACAAATTTGTGAGGATCACTTTTAAAAGTAAAATTTATTTTCAAACACATAATTAAAAGAAAATTTCTAAGTAAGAATAATGAGATACAACTTTATCAATTGTGTAAAAGATCTGTTCGAATGGCAGCAAATCTGTCGACCTAATAAAGATTAAAATACCTGTAGTTACGACAGCAACTAATAACTATTGAAATAAACGGGTTTTTGTTCAAAGGGACTGTTATGTTTACTAAGTAACAGCAACGAAAGATAGAGATCGACAGAAATATGCTATTAGATCATTGCGGCATAAAGTATAATTGTAGGTGGG # Right flank : CTCATATGCACTTGAACGCCGGGCCCTTTCGGAAAGGTTCAAATCTAAAACAGATTAAAAGATCAGTTGGCGACACTTACTATTTGAAAAACAAACCAACTAAAGAATCAAATCCTTGTCCACCGCCCATTCCCCGAAGTTTTCCCAAAACACTTTCCAACAGCGGAAGGTGTTTTTCTTTTCCCGTTCTTCTTTTATTCCTAAACTCTGAAACTTTCGTCCGAAACGTTCAAGTTATTTGCTAGAATTAATAATAGAATAATTATTTTTTATGAGGAGAGGGCTTATGCAGGAGGAAACTAAGGTATTGGTCATTGATGATGACCAGGAGCTTTGTTCGATTATTGATCGTTATTTAAAAAATACTGGTTACGAAACGCAGCTTGTCCATACGGGTGCTGGTGGTCTGCAATTGGCACTGTCGGGTGATTATCATTTGATTGTCTTGGATATCATGCTGCCGCAAATTGATGGCATGAGTATTTTAGCAGAGATCCGTA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCAAAGTCTAAAATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 228153-224677 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOS010000002.1 Enterococcus raffinosus strain N17 No17_ctg002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 228152 30 100.0 37 .............................. TTGGTTGACATAGGAACTTTGATACTTCCCTTTTGAG 228085 30 100.0 37 .............................. TATCAAGGGTTGCATGGATTTATTGAAGGCTTGGGCG 228018 30 100.0 35 .............................. TAAGAAACATCATAAATATAGTTTCCTGATTTACG 227953 30 100.0 36 .............................. AGCAATCCCGTCGCTCGCTATCGGTGTTGGCCACAA 227887 30 100.0 36 .............................. TTAGTATCTCAGAAACTAGCGAAAGATTTTAATGAG 227821 30 100.0 36 .............................. TTATTAATTCATGTTGATGGGCCGACAGCAGTAAAG 227755 30 100.0 36 .............................. TCTGTTAAACGTTGCTCAAATTCAAGACAATCGTAG 227689 30 100.0 37 .............................. GGTATTGCGCTCATGGTGGCTGCAGAAGGCTGATTGG 227622 30 100.0 35 .............................. ATTTGCTGGGGTCGGTCAAAGTTCTACGTTTCGAG 227557 30 100.0 36 .............................. TTGATATTATTTGAATTAGTAGTAACTGTTGTATTG 227491 30 100.0 37 .............................. GCAACTGTTGTTGAATCGAAAGTAACCTGCATTGTTG 227424 30 100.0 36 .............................. GAAGAAAAACCGGACGTGTACGCAGCGTTCATGGGG 227358 30 100.0 37 .............................. TCGAAAAAATTCTAGGAGAAGAGTTTCAGAGGATTAG 227291 30 100.0 37 .............................. GTATGACGATCAAAGACATGAAGGAGTTTGCTAAGAC 227224 30 100.0 36 .............................. TATGGAGAAGCTGAAAATAGTTGGCTTGGTGGTATG 227158 30 100.0 37 .............................. GGTAAACGAGATCGTATCATCACTGTCAGCAAGAGAG 227091 30 100.0 36 .............................. GCAGAACATGGATATGTACGACAACTTAAAATCGGG 227025 30 100.0 37 .............................. GGCGGAAAAAGCGCGTATGAAATTGCAGTAGAGAACG 226958 30 100.0 36 .............................. CAAGGTGTTCAAGGTCCGAAAGGTGACGTTGGTCCA 226892 30 100.0 36 .............................. AGTTGGGGCTATCACGTAAAGAAAGGAAGTTAGAGG 226826 30 100.0 35 .............................. ACAGCAACGTGATGGGCTTATGAGTTCGATCTCTG 226761 30 100.0 36 .............................. ACGGCCAAAGCTGGAAGTACAAACGTTGTTGTTTGG 226695 30 100.0 36 .............................. GTCATTAGACTTAATGAAGCATCTAGAATCATCTGG 226629 30 100.0 37 .............................. CACGCTACTTAATTGGAGTGAAGGCTTTTTTCTGTGG 226562 30 100.0 37 .............................. CTTTTCTTGAAAGGGGGTGAAGACATGAAGGAAGTGG 226495 30 100.0 37 .............................. AAATAAGGAAGAAAATCGCTTCCCTATTTTTCCAATG 226428 30 100.0 36 .............................. TTTGGTAATGTTGCTTGTTCAAATCATCAGACGTGG 226362 30 100.0 37 .............................. ACAAGAAAAGCAACTCAAGCAGACTTTGATAGTTTTG 226295 30 100.0 36 .............................. GAAGTAGGCTTAGTAATATCAAAGCCTATCGACTCG 226229 30 100.0 36 .............................. TTACAAAGGGTCAACGTCTGTCGAAGGTAAAATGAT 226163 30 100.0 37 .............................. ACGACAAACGATAGCAACATGGGGAATGATTTCCGTG 226096 30 100.0 37 .............................. ATATACTCAGTCCTTTCTCCCTAACGGGATCTCATAG 226029 30 100.0 36 .............................. CATAAAAAATACACCCCTTAATCATTTGATACAAGG 225963 30 100.0 36 .............................. GAAGTATCCGGTAAATCAATATTCAATTTGATCTCG 225897 30 100.0 37 .............................. TCGTTAACAGAATTCCACACATCCGTCTTCACTTGCG 225830 30 100.0 36 .............................. CTCTATAGGGTTGGAGATATTTTCGAATTTGATGGA 225764 30 100.0 36 .............................. ATGTTTGATAATCAGTTTCGTTTGATCGAAGGAGTA 225698 30 100.0 37 .............................. GCAGGAAGCCAAAGGAAAAAGCCGCGTTTGAACTGCG 225631 30 100.0 37 .............................. GAAGGTAAGATTTACTCTACTGCGGTTGACAATATCG 225564 30 100.0 36 .............................. GTTTGATGGCTCGGCTTATCCGCTCGTTCCGCCTAA 225498 30 100.0 37 .............................. TCCTTTGTAAAGTTTGTACATGTTGGCCAGTTTGCCG 225431 30 100.0 37 .............................. GACAGATGTCAATACTCTAACAGGTAGAGTATCTGTG 225364 30 100.0 37 .............................. TGCGGTTGAGCTTTTAAATAATGCGTTTGGGCTGGAG 225297 30 100.0 36 .............................. AAAGCAGCTGAAGGAAGGACACTTCGTTAAAGCTTT 225231 30 96.7 35 ..................G........... CGCAGCAGTACAAGCCGACGACGAAAAACGGCAGC 225166 30 100.0 36 .............................. TGTTTTCAGCTCCTTTTTTAGTCTATATCTAGCGAT 225100 30 100.0 36 .............................. GCCAGCAGAAGTGAGCAACAAGAACAACGATTCTTT 225034 30 100.0 36 .............................. GAAAAACCGTGGTAATTTTTGTCAGGTAACGGAGGA 224968 30 100.0 35 .............................. GTAATCCGTTAGTACATAGACAGCATCAACTATAA 224903 30 100.0 36 .............................. TGGGCTTACGTGTATTACACGAAAACCGACGACAGC 224837 30 100.0 36 .............................. TGCTTCATATTTGCTGAATGCAAGATGATCAGCATT 224771 29 93.3 36 ..............C-.............. GGGAACTTCGCCATCACTTTTTCGGCAACATCTACA 224706 30 86.7 0 .................C....G.A.T... | ========== ====== ====== ====== ============================== ===================================== ================== 53 30 99.6 36 GTCTAAATCTAAAAATAGTGGAATGTAAAT # Left flank : TGAACCTTTTAAAATTTGGTGGTGAAAAATAGTGTATGTCATTCTTGTGTACGATATTTCTTTAGAAGAAAAAGGCGCACGCGTATTGAATCGCGTGTTTAAAATCTGTAAAAAGTATTTAAGTCATGTGCAAAAATCTGTTTTTGAAGGTGAAATCACACCTGCAAAGTTAAAAAAGTTAGAACAAGAGTTAAAAGAATATGTCCGTGAAGACCTAGATTCAATCTTGATTTTCAAAAATTCCAATAAAAAATGGTTGAAGAAAGAATACATTGGCATTGATGGTACGGAATTAGTTTCGAATTTCTTTTAGATTTCAAATCTGTCGATGTGAGATGCCCTAAAAATCCCCTAGTTACGACAGATAATAAAAAATACGAGAAACTAAAGGTTATTTCTGGTATTCAATGTTATTTAAGTCTGAAAAGGAAAGCGAATTTTCGAGATCGACAGAAACGGGTTCAAAAAGCCTGTTGTTTCAATGTATACTAATCACGAAG # Right flank : TGCATCGAGTAAGCTTTAAAGATTATCGGAGCTAATCTGAATACTGCGAGGAAGAAAACATGAAAGTATACACGGTTCAACAAAGAGATTTTTTATCATATTCTGACTCACAGGGATTTATTTTACCTCAAAGAGATCCAGAAAATTCTATTTTTACAGATGACGAAGAAGGAGCCAATTGTTTGTGGGCTCTAGAATGGATGAAAGGACAATTTGAAAAACGTATGATTATTCCTTTAGATCGCGATCTGATTTGGGTATGGCCGGATATTCAGGCGTATCTATATGACAGAAATAATCTTGATTTTTCACGGTATGCATTGTTTACCTTTGAAATTCCTGCGAGCTCCTATAAAAAAGATATTTTATGGTCGGATTTCTTTAGATGGCATGAAGTTCTGAATCGTTTGTGGGAAGGGAAAAAAGACGAAAGCGAAAGATATGAAGAAATTTTCCAGTTAAAGAAACACGAACAAGCTGGAAGAGTACAAGGAATCACA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAATCTAAAAATAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 239763-238765 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLOS010000002.1 Enterococcus raffinosus strain N17 No17_ctg002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 239762 29 96.6 35 ..............T.............. TGCGCTACCTCCGAATGTTCAATAATCTTTTTAGC 239698 29 96.6 36 ..............T.............. ATAAAATTGAAGCTTAACGTGCCAATAAACGCAAAA 239633 29 96.6 36 ..............T.............. TACTATTTCATATGTGCACATAATTTCCCTCCTCTA 239568 29 96.6 36 ..............T.............. TATCAAAAACATTGGAACAGATGCATTAAAAGGTTC 239503 29 96.6 36 ..............T.............. ACAGCAAAAGTGGTGAAGTTATGACAACAATCTATC 239438 29 100.0 36 ............................. CAGACTGAGCTAGACATTAATCTCGATCGGATCGCA 239373 29 100.0 35 ............................. GCACATGTCGCAGCAAAATGCTGACAAGATGCTGG 239309 29 100.0 36 ............................. ACAGCAGAATCAGACATTTTTACTGCCTTTGCGATA 239244 29 100.0 37 ............................. GAGGACGGCGTAGGCCGTCAAAACGGCTTTCACGACG 239178 29 100.0 35 ............................. CACAAAAGTTATCTTGAACCGTTCTGCGGGTCTTG 239114 29 100.0 35 ............................. CCTGGATCCATTAAAAAATGGTGGGAAACTAACAT 239050 29 100.0 37 ............................. GAATCAATCACGATGGATCAAAGTCCGTGGTGGTAGG 238984 29 100.0 35 ............................. CAAAAAGATTTGTTACTGGAAGGCTTCGCAGATAA 238920 29 100.0 36 ............................. CTGTTCATTAACGGGAATCTAAAAGGGGAATGTTTA 238855 29 100.0 35 ............................. CCGTTACTTGTCATCATGATTCCAAAAAGCGATTT 238791 27 86.2 0 ................T....-.-....G | ========== ====== ====== ====== ============================= ===================================== ================== 16 29 98.1 36 ATCTAAATCTAAAACAGTGGAATGTAAAT # Left flank : TCCACTAGCGGGGCAGTAACTTCTATAGTTGAGGAAACGCCTGAGCCTGCTGAGGAAAACAAGAAACCAAAGAATCCGCAATCAATCTACAAAAAGCCCAAAAGCAAGAAGCAAGTAGCGATAGAAGAAAAAAATGATTTAATGAAAAGGAAGAATAAAGGCCAAAGTAATCCAAAAAAATCAAAAGATCGTAAGCGTAGACGAAGAAAATAAGGCGATAAATTTTATTGGCTTAATCAAAAAAAGCGTGCTATTTTGCACCTTTATTTGTTATGGGCAAATAACTTTAGAGTTAATTTGAATAACTTCACATTGCCGGCAATCTGCCGACCGTTGAAAATCGGAAATTCTTGTAGTTACGACAGCAGTGACAAAGTGTTGAGATGACAAGGTTTTTGATTAAAATGATTGTTATGATTGCTTAGTAAAGAGTGTCTAAAGCAGAGATCGACAGAAATAGTTACTAAGTCCTAGTGGTAACAGGTATAATTTAACATGGG # Right flank : TACTGTGAACCCTCTCCTTCTATTACTTATTTAATGAAAATCAAAACATGTATACAAAACCTATTTGATCATTAATGTTGATTTTGATCAAATAGGATGAGATGATAGAGTATCATTAAGGAGGGATAGTATGAGTGCGATTAAAGGATTAGAGCTATTACCACCAAAGGTTACAGTTGTTCAGGCGTTGCAATTATATAAAAAAGTAGCAATAATAAAATCATCCATTGGAAAATTGAATTCTGAGTTAGGGCATTCAATGGTGAACTCTCAGTTAATTCAAATGCTTACTCTTAAAGAATCTGTGCAATCAACTAGGATAGAAGGAACACAAGTGACTTTTGCAGATATGATTGAAGATGCAACGAAAAAGAATAAGAGTAATGAAGTGGTAGAAGTTGATAACTACATGGAGGCACTTTCTGAGGGGATTGAGTTGATCCAATCAGGGGTTCCTATATCTTCAAGATTAATTAAACAACTGCATAAAGTTTTAATGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTAAATCTAAAACAGTGGAATGTAAAT # Alternate repeat : ATCTAAATCTAAAATAGTGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //