Array 1 21749-23162 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRDQ01000018.1 Staphylococcus pseudintermedius strain MRSP 424 18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21749 36 100.0 30 .................................... ACATTCCAGGGCTCTTGATAGTAGAGGATC 21815 36 100.0 30 .................................... CTTTAGGAATAATAGTTGGTGTATCTTTTG 21881 36 100.0 29 .................................... TTTTCTTTTTTCAATTGATTACTAGGAAT 21946 36 100.0 29 .................................... TTGAATTGAAACGAGACATGGTTGATTAT 22011 36 100.0 29 .................................... AAACAGAAGTTAAACCTTTTGGGATGGAA 22076 36 100.0 29 .................................... CTATCCATAAAGCGCATATAAGCCACTTT 22141 36 100.0 29 .................................... AACAAATATGGATACTGCACAGCGAGTAA 22206 36 100.0 30 .................................... GAAAACCAAGAATATATGAATGATGCTGAA 22272 36 100.0 29 .................................... TAATACGCTTGACCATCGACATTGTAAAT 22337 36 100.0 30 .................................... ATGATGAATTGATGCTAGACCCTGTTGCGA 22403 36 100.0 30 .................................... GAATAAATTTCAACCTAATTATAACAGATT 22469 36 100.0 30 .................................... TATTAACTTCGATTCTATTACAAAAGGTAT 22535 36 100.0 30 .................................... TGCAAATCGAAAGAATACTATTTTACAAAT 22601 36 100.0 29 .................................... ACAATCTCAATTCTCGTATTTTTATCACT 22666 36 100.0 29 .................................... AAATATTGGCGTTCTCAGTTTAACCCATA 22731 36 100.0 30 .................................... TGAGCCTTTATCATTTAGAACAGCTAGAGT 22797 36 97.2 30 ............................A....... TTTCCTTCGTGATTTCTTCTTCTACTTCGA 22863 36 97.2 29 ............................A....... GCTAAAAGTCAATGTTACTTCATTCCTTA 22928 36 97.2 30 ............................A....... AATGCACGTGCTGTTATGGTGAAAGGCTAT 22994 36 94.4 30 ...........T................A....... CGAAAGTAAAGATAGTATGCAAGGTGCAAG 23060 36 97.2 30 ............................A....... GTTATGATGTTTGGCGATATGGGTCGTCGT 23126 35 83.3 0 T........T................-.CA.C.... | TC [23158] ========== ====== ====== ====== ==================================== ============================== ================== 22 36 98.5 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTTTTTCCGGAGTCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTTGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATATTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAAATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACATATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 138077-139038 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRDQ01000001.1 Staphylococcus pseudintermedius strain MRSP 424 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 138077 36 100.0 36 .................................... ACTTCTCTCGCCATTTCTGCTAATTGTTCTACTTTG 138149 36 100.0 34 .................................... ACTAGATACCCAGAACAAAATAGGTCTAACGAAA 138219 36 100.0 36 .................................... TCTATAAGTTCATTAATTCCGATACCTAGATTATCT 138291 36 100.0 37 .................................... TAATAGTGTTGTTCTCTATTAAAAGATACAATCCTGT 138364 36 100.0 34 .................................... TAGAATGTTATTATCTAAGTGGTCGATGTATTCC 138434 36 100.0 37 .................................... TCATACTAGCACCCCACTCTCTACTGAACAAGTATCA 138507 36 100.0 35 .................................... CTTAAAATCTAATTGCATTGTTATCAATTCCTTTA 138578 36 100.0 35 .................................... TTTTCTTTAACTGTTTTTACTGCCCATTTAATAGT 138649 36 100.0 36 .................................... ACAACTTCGTCATCTTTCATCATTTCTCTTACATCA 138721 36 100.0 36 .................................... ATATTTCTTCCATGAATAACACCCTCCTTTTTTCTA 138793 36 100.0 35 .................................... AAGTTAACGGCATTACCTAATAAAAATATTTTAGG 138864 36 97.2 33 ...................................C TCATCTTTCATGTCACTGATTAATTCATTTGTA 138933 36 97.2 35 ...................................C GGTAATAGTTGCTCAATAGGTAATAAAACGTCGGT 139004 35 91.7 0 ............T.................-...G. | ========== ====== ====== ====== ==================================== ===================================== ================== 14 36 99.0 35 GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Left flank : TCCCTTGAGTAATCGATTTAATAATTCTACCGCCACATTTTTCTGTTTCAATCCTTCTACATCTTTTAAAAAGTCATCAGATAGGATTGATAAATCGGGTTGTTCAAGACCTAAAGTTTAATAAATGTCAAGTCAATGAAATCTTCAGTTAATAGTGTATATTTGATTATTATTAGTTTAAATATATTAAAATTAAATACTTATTATATATGGTTCTTTACTATTTTAGAAGTATATTTTTTATTTTCCTGAACAGTAGTTATTAAATTTATCTCTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTCTTAATATATAGAAAATTATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAGTTTTTGACAGCCAAAATAACACTTGAACCTTTGTGGTTATGCTATTTATTAAAGTATCT # Right flank : TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTATTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAATTAGTAATTAAATGTATAGAAAATGATATCGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAATAACAGGGGACGAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 148001-147762 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRDQ01000001.1 Staphylococcus pseudintermedius strain MRSP 424 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 148000 24 100.0 45 ........................ GCATAAAGTTTTGATATACACGATCGAATATGAGTTCTCGTCCCC 147931 24 100.0 50 ........................ AGTGGTCCAGAATTAATACATGGTAAAGGAGTATATCAGTTCTCGTCCCC 147857 24 100.0 47 ........................ GAAGACCAATTAGAATCATATCGCGTCTTAGAAGAGTTCTCGTCCCC G [147849] 147785 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 4 24 100.0 48 TCTTCTACGGGGTAGTTATCGAAT # Left flank : CGTAACACTAATGTCTATATCTGGAGCATTGTTAGCTGTTACTTCGCTTTCAGTCGTATACTAATTAATAAAGTATTTACTAATGTGGTTGTATCAAAAATATTTGCTTTTATATCTTGCTTCAGATTTAATTCTTATTGTTTGTTTTCTTCTTTTTATTTTCTTAAGTAGTAACTCTCGAAATTGCACTACACATCCAATTCCTCAATAATATGCATTTCATTCGCTGTTATTTGTATTTAGTATTTCTAATTCCAACTTAATCGCAAAGAAATTATTTATATGAAAGTTATTTTTGTTTCTGTTTATTTAGAAATTGAATGTCGATTAATTTCAATAATAATGAATTACAGTTTAAATCTTGATTTTTTGTTCCTCTTTTTTGCAGAATATTTTATCAAATCAAATATATTTTTAATACTTTTTCTCTATTCTACGAGGATTATCGATTTCTTTTTAACCAAGCCAATTGGGATCATCAAGATGAGATCCTCGTCCCC # Right flank : TTAGATAGCTCTTTAAAGCCTATCAAATCAATAGTTCAAAGGCAAAATTTACTGTCAAAAATAGTGACAAATCACTTGTACTATAAGTGCAGAATGTCACATTTTTTGACAACTAAATTTCAGCTATACTCTAGTTATATTATACTATATTTCCCCATGCCTAAGCTTGTTTTCATACCTGATCCAGAAAATTCGCCAAACTTCAATAAAAAATGAGTTAGTTGTAGAAAAGGTAAGGGTCCTTTAATTTTAAACACTATTTCTCCCGTAAATGAAGGGATTTTAACTTTTTCTAAGTTAAATCGTGTACTTTTCAATTTATAGTCAACAATATTAATATTTTTTTCTAAAAAATCTAATGTTTCTTTATCGTACATTTTATATTCTTCGAAAAAAGCATCAAATTGTATCATAATACTTCTAAAGAAACGTTTAACCTCAGGAAAAATCATGTAATTACTCTGATATTTAAAAGACATAGGTGTCTGTATATTAATTCT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTTCTACGGGGTAGTTATCGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 210191-211238 **** Predicted by CRISPRDetect 2.4 *** >NZ_PRDQ01000001.1 Staphylococcus pseudintermedius strain MRSP 424 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 210191 36 100.0 37 .................................... AACACGATTTCCAACATCTAATTTACCACGCTTTTCA 210264 36 100.0 36 .................................... ATTTTCTATCTTACAATTTAATAATAACATGAAGCG 210336 36 100.0 36 .................................... GATTTTAAACGAGTTTCTATATATAATTCATCTAAA 210408 36 100.0 36 .................................... ATCCAAGTCATCATCGCCAATCATAAAATAATCCTC 210480 36 100.0 36 .................................... TTTTATTTTTATTAAACATTTCCGCTTTCTCAAGAG 210552 36 100.0 38 .................................... ATAATTACTGTCATCAATGTCTCGTAAGTACATACTAT 210626 36 100.0 36 .................................... CGTTCATTTCGATATTGTTTATTACGTTTTTCATTT 210698 36 100.0 38 .................................... CGTACAACCATTTTTAAATGTTGCCCAACCCGTTTTTA 210772 36 100.0 34 .................................... AGCTAACATATGAAATGCATAAATAATTTCTTGT 210842 36 100.0 36 .................................... CATATTTTCGTACCCTTTATAAGTTTTAAAGTTGTC 210914 36 100.0 35 .................................... TGTTCTCCTCTTTGTCTATGTGTTTTCTTTATATT 210985 36 100.0 35 .................................... TGCTACCTTCCGCTCTGTATGTTTTATTCATGTCT 211056 36 100.0 36 .................................... TTACTCATTTGTGATTTGAATGCGCCTCTTAATTCT C [211069] 211129 36 88.9 38 G...G....A.T........................ CGTCGAAAGTATCTTCAATATTTAAAGTAAAGTTTGTC 211203 36 88.9 0 ....G......A....G............T...... | ========== ====== ====== ====== ==================================== ====================================== ================== 15 36 98.5 36 AATCTAATAGAGACCCCGATATTAGGGGACGAGAAC # Left flank : GTGAAAACTGGAGATGAAGTCAAATGTGTAACGTATAGTTGAAAGGTGGTAATACAGCGGTTTTGGCAATTTAATAGGTGATGGAAATGTCAAGGCACAATGCATATTCCGATTAATTTTTTAAATACGAAGAAGTTAGGAATAAGCAAATATTGAAGTTTGCACAGCTACAGTATATTCGGCCAGATGTTAATTATTAAAAAGAAAGTTCCAGTATTCAAAGGAAGAGTAGAAAATGTATGATAATTATCATTAACAAGACTTCGTTTAATTGAAAGCGTTTAAAAAATATAGAAGAAAGTAATCATGTGAATAGGATATGAATTAAGAAAGGTTTATTGTATAATATCTATGATATGTTTTGAAATATTTATAGTTGGTTGAAACTGAAATGTCTAAAAATTGGACAATAGTGGTATTTTTAATATTAAATTTGTCTTATTTCTAGACATGATTAAAGTATAGTTATCCTCGTTATCAAGGTGTTTCTACAGCTGACT # Right flank : CAGAACTTTCAATGTGAGTTGTGACCAATGAAGTATTTAAAAATGATGAGAGATATAGAAGTATGAAGGCAACGTTTTAAAAATTACAAATAATTCACAATTCTGTTGTTGCAAACAAATAAATGTTGTAAAATTAAATTAACATTTTAAGCGATAAAATGGGGTCTTATACTTTTTGGTGAATGTTTGTATTTTTGCATATATTTTAGTCATAGTTATTTAAAGTGTAAGTATTAGTGCTTTTGATTAAAATTTTGAAGAAATAATAAGTGATTAAAAGGTGTTGAGATTGAATATACTACTGTATTGATACAATGACTCACTGAATAGTATCCTTGTTTTTATCTAGGGAGGTGTAAAAATGAAAGATATCATTTACGTTGAGAACCATCATTTTGTCAGTGTTAAAGGGGAAAGTATCAAGTTTAAAAATATTATTGATAAATCAGAGCAATATTTTTTAGTAGATGATATCGAAGCACTGATATTTGATAGTCATA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCTAATAGAGACCCCGATATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //