Array 1 92879-93206 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCTL01000020.1 Cedecea neteri NBRC 105707 = ATCC 33855 strain NBRC 105707, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 92879 28 100.0 32 ............................ AGTCCCGCTGGAGCAGTGGTGCCTGGCTGGCC 92939 28 100.0 32 ............................ GCAATAACGCTGATTAAACCTAACACTGGCAC 92999 28 100.0 32 ............................ TGTGCAACTTCCTCAATGCTGAACCCGGCCTC 93059 28 100.0 32 ............................ TACCACCGGACGGACGTCACGCTCAGCCTGAC 93119 28 100.0 32 ............................ AGATTACCTGAATATCTCAAGCCTGCAGATAT 93179 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTCGAAAAAGATGGGCGCGAGCTAAAAATTCGTGTTGAAGGGCAATTGACGTTCAATAGCCTTCGCCAGCGCATTGATGCTGCGTTGCTCGGCCTGGGGCTGGCTTTTGTCCCGAGCGATACGGTAACCGACAAGATTGCCGAAGGACGACTGGTGCGGGTGCTTGAGGCCTGGTGCAAACCGTTTCCCGGTTATTATCTTTATTACCCCAGCCGCAAGCAGCATACGACAGCCTTCTCCCTGCTGGTGGATGCGCTGAGATATTCGTCCTCACCCACAGATGATTAATGGATTATCGATGAGTTTTTCCGAACGATTTGCGAGTCGTTGCTGAAAATTCACCGATGCCGAAGCCTGAACGTTCCCAGACCCTTTTTTTAGCCCTGCTCGTAACTTATTGATTTGTCGATTATGCGCCGTTGCCCCTAAAAAAAGGGTGTGAAGTGGGAAAGAGATGGTTTTACCTATTGCAACAGAGGGTTAGCTGTGAAAAGCTCTG # Right flank : AACTTCGCCGCCGCCGCTCTCTTCGCTGCCGCACAGTCAACACACATCTTGAGATGATGGAGCTGTTTAAATAACGTTCACGTCTGTAGCCCAATTGGGCTACAATATCTATACCAGTTAATGAAGTGAAGGAGGATTTATGAGTATCAATGCCGTGGTACGTGCCCGGATTGACCCTGCTATTCGTGATGAGGCTACAGAAGTATTGGCTCAGTTTGGCATGACCATAAGTGACGTTATGCGGATGACCTTAGCGTATGTCGCTAAAGAGCGCGCATTGCCTTTCGAAATGCGCCTGAATGCAACGACTATCGAGACGATTGAAAAGGCCGAGGCGGGAATAGAGGTTCATCGCGCTAGTGATGCCAAAGATTTGTTCGACCAACTGGGGATGTAATTCATGCCCCAAAGGGAGATCAGTTACACCGGACAGTTTAAGCGTGATTTGAGGTTGGCCCAAAAAAGAGGATGCGATATCCCAAAGCTGCAGGGCATCATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 105069-107120 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCTL01000020.1 Cedecea neteri NBRC 105707 = ATCC 33855 strain NBRC 105707, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 105069 28 100.0 32 ............................ CAGAATTGATGCGGCATGGATATTAAGGCCAT 105129 28 100.0 32 ............................ TTTGTGACTCAAGCTCTTCGATGCGCTTCTCT 105189 28 100.0 32 ............................ ATCACCGGCGACTTTAAGTGGCTCGACACCTT 105249 28 100.0 33 ............................ TGCCTGGTACACGGCGGAAGATAATGCTCTTAC 105310 28 100.0 33 ............................ CGCTAGGTGCCAGAGAAGGCTGCGGGTCGGCAT 105371 28 100.0 32 ............................ TGAAGTCTGCGAACGAAATCTTCGCTACCTCT 105431 28 100.0 32 ............................ CATCCATCCGGCAAGACCACAGGAAGCGCCCA 105491 28 100.0 32 ............................ TACAGATGACGCTAAGAGTCAGGGAATAACTG 105551 28 100.0 32 ............................ TACGTCTCTGGCGGTACCGGGCAGGAATTGAT 105611 28 100.0 32 ............................ ATCATTAAAAATATTGTTGATGTGCTTGATGA 105671 28 100.0 32 ............................ TTTGATATGAGCCCTTGAGGAAGTCAGTTAGT 105731 28 100.0 32 ............................ GAACACAGATAACACGGTATCTCTGACCGTCG 105791 28 100.0 32 ............................ ACAACGTAGTTATTCCGTCCGATGAAGCTGAA 105851 28 100.0 32 ............................ AGAACCTGACCGCCGTCCTTGTAGACGCGCAT 105911 28 100.0 32 ............................ GGATGGGCGATCACTAAAGGCGGCTATGCGGT 105971 28 100.0 32 ............................ TCTTTTGTATCGAGCCCCGGCACACCGAGAAT 106031 28 100.0 32 ............................ ATTCGTCAGCGTAAGTGTACCTTGAGCCATAT 106091 28 100.0 32 ............................ CGTATATCCCGCACCATGAACGTTGTGCTGAA 106151 28 100.0 32 ............................ TCTAAAGACTGGCTAATCACTGCTGGTGTTAT 106211 28 100.0 32 ............................ ATCACCAGATCGTCGGTTGTCTTTGAGCCAGT 106271 28 100.0 33 ............................ CTCTGCTACCCACGGATCCAAAAATTCTGCAAT 106332 28 100.0 32 ............................ TCGCCAGTTACGACGGAGAAATCGTTACGGTT 106392 28 100.0 32 ............................ TCCGCTACGCCATTAAGCACGTTGATGCTGTT 106452 28 100.0 32 ............................ TGGTGAGATTCATCTGTGAAGCGATCGGGGAA 106512 28 100.0 32 ............................ TGTGAAATCGGCATCTTGTTACCATCGGCATC 106572 28 100.0 32 ............................ ATGTTGTTGTTCAATCCGTAACAAATACCGGC 106632 28 100.0 32 ............................ GCTGACTTTGGCCAGATCCTGCGCCGTGATTT 106692 28 100.0 32 ............................ ACGCAGGCTTTCAACATCAATCGCTTTAACCA 106752 28 100.0 31 ............................ TGAAGAGAAGGCCGGGGCTGCTTAGGAGTTG 106811 28 100.0 32 ............................ ACGTCCGCCAGCGGTTGCGCCAGTTCCACGCG 106871 28 100.0 32 ............................ ACCATTTGTGATCCCCCAGGTCGCCAGCGGGC 106931 28 100.0 32 ............................ GGTCGGCAGCGCGGCGGCGGTAGCCTGCCCGG 106991 28 100.0 33 ............................ AGAAAATATATTGCTATCGGGAAATAATCATGC 107052 28 100.0 13 ............................ CTGTTTCGATACA Deletion [107093] 107093 28 75.0 0 ...........C.........AGGCG.G | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGAACTCACTTCGTCTTAAATGGTAATGTTTACGATGCAAGATATGCTTAAAATGCCATTTTTGTATCGTATTCGATGCGGGTTGTTGCGTAGTGGTAATGCATTAAATGCCAGAACTCAAATGTTAAAGCATTCGCTGTGAAATGCTCTTGTTTACTGTCGCACAGGCAGAGTTGAAGTAGTCGCGATGAGCATTCTTAGGAGATTTCACCGCCGCATAGGTTATGAGCGACCATAAAACCAGGGATCTTGCCGTCTGATTTTTCCAAGCCTGTTCGTTGCCCCTGCCTGTTCGTCATCCAAAAAATGGGTTTGAAGCACGGATTACAGCTGAATAACCATCGATGCTAAAAGCCGAACGTTCGCAAACCCTATTTTTATCTCAGCTCGTAACCTATTGATTTATAGATTCTGTGCCGTTGCACCTAAAAAAGGGTGTGAAGTCAAAAAGAGGCGGTTTTGTTTCTTGCAACAAAGGGTTAGCTGTGAAAAGCTCTT # Right flank : GGTACGATAAAATTAAGTGTCTCGCCTGCATTCCCTCACGCCAGCCCCAGAACCCTGTCCAGCGACCAGCGGCCTGCTCCACGGGCGAGGACTAGCAGCAGCAATCCGCCCCAAATCAGGTGCGTTGGCCATGCATCCGGGTAGACAAAAATCTCAATCACCAGGGTCATAAACAGCAACCCCGTGGCGGCGAAGCGTGAAAACAGACCCAGCACCAGCAGAACAGGGAAGGTGTGTTCGGCGAATGTGGCGAGGTGCGCGGCGATGTTATAGGGGATAAGCGGCAGCGCGTATTCGGTGCGGAACAGCTCGTAGGTGGACGGTTTCAGCGTCATAAATCCGGTCACTTTGGTGCGGCCAGACAGGAAGAACACGGCGGCAATGCCCATGCGGGCTATCAACAGCAGCAAATTGTCACCAATACTTCTCTGGATCCTACCCCAGAGTCTATTCCACAGCGCTCTCGCGCCTTGTTCCGTCGTTTTTTGTTCAGATACTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //