Array 1 116379-119280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVV010000006.1 Bifidobacterium longum strain J1101004_170508_D4 NODE_6_length_119406_cov_82.4733, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 116379 33 97.0 34 ................................G GCAAGCAGGCGGGCGACGAACTCACCTTCTGCAC 116446 33 100.0 34 ................................. TTTCGATGTTTTGGATGACATGACCACGGTATGC 116513 33 100.0 35 ................................. TGATTGCCTCGGCAATGTGCTGGTTGATGGTCACC 116581 33 97.0 33 ................................A GTTATCGGCACGCCTACCGTCGTCTTCGGCGGC 116647 33 97.0 35 ................................G GCATGACCGTCTCATACGCGCTATGACCCGTGGGC 116715 33 97.0 35 ................................T GAAACGTCATCCGAAACCATCATTGCCGGACGAGC 116783 33 97.0 34 ................................T CCGATGAAACAGTGGAGGAAGGATCACGATGTGC 116850 33 100.0 33 ................................. GCGATGACGAGTCTCATTCGCGTTCCTTCCGAC 116916 33 100.0 35 ................................. CTGCAATATCGGATATGTACAGTGTACTTGCAATC 116984 33 97.0 35 ................................A CTGTCGCCAAACACCGGATCGTCCGACATTGGATC 117052 33 100.0 34 ................................. CCTTCCTGTGGTTACCCTTGAAACTCTCGCGCAC 117119 33 100.0 33 ................................. GACACGGAATCCGATGATAACCACGGCTCACAT 117185 33 100.0 33 ................................. ACACGCGCCGGTCCAGGTTGTCGGGGATGCCGC 117251 33 100.0 36 ................................. TGTAAGGGAATTGGGAGCGGCCCGGAAAATCACCGG 117320 33 97.0 33 ................................A TCCATTTCGTGCAAAAGTCTTGCCATAACGTCA 117386 33 97.0 34 ................................G CGTCCCTGGCCTCGCGCGAGGCGGCTCGCGCCAC 117453 33 97.0 35 ................................T CGATGGTGAAGAGCCTAGATGAGCAGATCAAGTCC 117521 33 97.0 34 ................................G TCAATGTACGCCGCATTGTCACGAACGCAGGACA 117588 33 97.0 36 ................................A TCATCCGTGTCGTATCCGAACGCAATGAGGTTGCCG 117657 33 100.0 34 ................................. ACTGCCAACGTGGTGACGCCTACCGGTACGACGG 117724 33 97.0 34 ................................T CACCTCCTGTTATAATGCCGCCGAGGTTGACTTG 117791 33 100.0 33 ................................. AGCATAGCCCAAAAATTCGCGTCTTTATCGAAC 117857 33 100.0 33 ................................. AGTAACGACTGTCGTGAGTTCCGGGTGGCGCGC 117923 33 97.0 34 ................................A CGCAGATGACCATGCAGCCGCACACCGACATGCT 117990 33 97.0 34 ................................A CCACGGCGTGGAACGCCTACCCAAGCCACACCGG 118057 33 97.0 34 ................................G TTGACATAATAATTATAGCTCAATTAAGTAAGTT 118124 33 97.0 32 ................................T CCACGCACCTCGCCGAAGCCGGAGCCCCGGAA 118189 33 100.0 32 ................................. GTCCGCCAAGCCGACGGGGAACCAGAAGCTGG 118254 33 100.0 35 ................................. GCGTCGAGGAGGTGAACCGTTTTGACCAGCGCAAC 118322 33 97.0 33 ................................A CGCCGGACACGAGGCAGTTGTTGTTGACCTGTC 118388 33 97.0 35 ................................A TCGTTGATCGTTGCTCCTACGGGTAGTGGTGTGAT 118456 33 100.0 33 ................................. TACACCGGGAGATTCCCGGCAGCGACCACACCA 118522 33 97.0 33 ................................T CGCGTGAGCTGCGCGAAGAAGACCGGCTTATGA 118588 33 97.0 32 ................................A CGTGAAACAGACCGCGACGGGGGAGCGCAAAC 118653 33 97.0 34 ................................A TCCAACAGAAAACGCAGGTGACTAATGAGGTGTT 118720 33 97.0 34 ................................A CGTTTTGGCAGATGCAGGAAGCGTATGTGAGGGG 118787 33 97.0 34 ................................T TATACCTGATTGCTGTAGTAAGCCGCCAAGAATC 118854 33 97.0 33 ................................A GCCCGTTCGGCGCGAGGTCGGGGCATGTGGTGT 118920 33 97.0 33 ................................A TGGCGGAGTGCGAACGGTTGAGCGGCGGTGTGC 118986 33 97.0 32 ................................A ACGCCGACCAGCAGACCATCTCCGACGTGATG 119051 33 100.0 32 ................................. AGATCACCCCCGGCAACCCGAACAAGGCCGGT 119116 33 97.0 34 ................................A CCCTGTCCGCTTGCGGTAGTGATACCGCGAAGTC 119183 33 100.0 32 ................................. CCTCCGGCGTGCCGTAAAGGTAGAAACTGGTC 119248 33 97.0 0 ................................G | ========== ====== ====== ====== ================================= ==================================== ================== 44 33 98.1 34 GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Left flank : ACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGTGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCGTATTATGGAATGCTATGCCCATTCTCGCGC # Right flank : ACTCGCTTGGAGCCTCCAGTAAGCGACGTGGGTTAGTCGCACCCCACTGTGTTTTGCTTCAATGTTTGTTCGACAGGTTCGGCAGTGTTTTTCCGCAGTGTGGGCTGATGGTTTTCCCCGGTGTCG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 58814-55600 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMVV010000018.1 Bifidobacterium longum strain J1101004_170508_D4 NODE_18_length_58882_cov_79.7421, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 58813 33 87.9 32 AAAA............................. GATGAACCAGCCCGGTGTGATAACCGGGCTGG A [58806] 58747 33 97.0 32 ................................G CGATCCAGTGGCAGTGTTTACTGGATGTCACG 58682 33 97.0 34 ................................G ATAAGCCCGATAAGTTCTTCGCGTAGGGCGGCCA 58615 33 97.0 35 ................................C ACCTTCGCGAGCATCAACGACGCCGGGATGCCCAA 58547 33 97.0 33 ................................G ACCAGCAGATGAGCACCGTGCAGGCCAACACCG 58481 33 97.0 33 ................................C TACTGGTATGACCTCCTCGTCGAAGACCACCGA 58415 33 97.0 33 ................................T CTACTCCCCAATCGGTCGAGAGGTACAGGCGTC 58349 33 97.0 33 ................................C AGTATTGGACCGCGTATAGTGATAGCCATCAAC 58283 33 97.0 34 ................................G GCCACTCGCAATGCGTTGCACAGTCGGTCGAACG 58216 33 97.0 32 ................................G CGGACGACCCGGCCGGCTGGCGGCGCGCGTTC 58151 33 97.0 33 ................................C TTGACGGGCACAGCGAGGGCGGCAGCCAGACCG 58085 33 97.0 33 ................................G TTGCTGGTCATGGGTTACTCTTCCTTCTTGCTG 58019 33 97.0 33 ................................T GGAATACCGACGTGATACTTACCGGCCCCACCA 57953 33 97.0 33 ................................C GATAGTGTGATGGCACCTGAGAAGGGTGTGTTG 57887 33 97.0 35 ................................T TCCCGCGAATGGGAGAAACGCGCCAAGGACAACAA 57819 33 97.0 34 ................................T GCTCGGTGGTCACATATCCCTTGATGTTGCTGGA 57752 33 97.0 32 ................................C GACACGAACACCCGTTACAGCGCCTACCAGAC 57687 33 97.0 33 ................................T GGCTGAAATTGAGAGGCCTGGACGGCACCGTGA 57621 33 100.0 33 ................................. AGACACCCACGGGAATCGTAAAGTCCCAAGCAC 57555 33 97.0 34 ................................G CCACGATGCTACCCACGCTCAGCATTAACTCCAG 57488 33 97.0 33 ................................T CTGGCACACAAGACTGTAATGGGTTGAGTGGCG 57422 33 100.0 33 ................................. CGACCGTGAACCGTGTGGAGAACCGGCCGCAGA 57356 33 97.0 34 ................................T TGCCGGACACGCCGAACAGCGTGGCGGTGATATC 57289 33 97.0 33 ................................T TGATCGCCGGCACCCAGATGGTGGTGATGTTGC 57223 33 100.0 35 ................................. TCCCCGTGGACAACCGCGAGGTGGCAGCCGACGAC 57155 33 97.0 34 ................................G ACCAGGACGTGACCCGTGCCATCACCCGCGTCAA 57088 33 97.0 32 ................................T TCATGCGCTGCAGTGCCTGGCGTGACATGGCC 57023 33 97.0 32 ................................C ACGACGACTGCGACTGCCAGATCGTGCCCGAA 56958 33 100.0 32 ................................. CCATCGTCTTGCAAATGAACACGGCGCGTGAA 56893 33 97.0 33 ................................T GGAACGGCCAATTGTGGGGCATCAGCAACGCGG 56827 33 97.0 32 ................................C TTCCGCGAGCAGATCGGCCCAATCATCAGCGC 56762 33 97.0 35 ................................T CGGACTGCATGTTCAACAACCTGAGCTTCCGCCCG 56694 33 100.0 34 ................................. CCCAGGGCAAGGACCTCGCCAAGGACGTGGCCTC 56627 33 100.0 32 ................................. TCACCACCGAACCATGCCAATACTGCGGCAAC 56562 33 97.0 34 ................................T GGCTCAGTTGGTAACTCAGATGGACAACGTAGAC 56495 33 97.0 33 ................................C TCGACAAGGAAGCCGCCAGCAAGAAGGCCGATA 56429 33 97.0 32 ................................C GTATCGAACCCGCCAACGGCGTGAATAATCTC 56364 33 97.0 33 ................................G ATGACCTGTACGAAGACTGATAATCAGAAGGGA 56298 33 97.0 33 ................................G AGGTTGAGGACTGCGGGGGCACCACCCGTTACG 56232 33 100.0 36 ................................. ATAACGGGTACGCGGATACGGTGTATCTGACGAACG 56163 33 97.0 34 ................................G CCCTAAGCATGGCAAGGCTGATAGTCGCGTGTTG 56096 33 97.0 34 ................................C TCAAAACGGTACGTCAAGTGAGACAGTTGCAGGT 56029 33 100.0 33 ................................. ACGATCCTTTAAGGAGGAAACCATGACCGCGCT 55963 33 100.0 33 ................................. AGCCGCAAGACATCAGCCTAGACGATTATCTAG 55897 33 100.0 34 ................................. CCCTGTTGGAGGATTACACGACCGGGTATGGCGC 55830 33 100.0 33 ................................. ACTTGCATCATAGGCGTATGCGCTCACACTCGT 55764 33 100.0 33 ................................. CCTGCACTTTGCGTGGCAGAGCAGGATACGCAT 55698 33 97.0 33 ................................T GGAAGCGGTCGACACGATCCTTGGAATCGTGGC 55632 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 49 33 97.6 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : ACACCCTGCGGAAAACCCGCTGCCTACACTGCGGAAAAACACCGCTCACAAAGCGGACGCCAACTTGC # Right flank : AGAACAGATTCGTAGGACACTGCGAAAAACAAATAGGGTGCTTTCCGCCATCAACAGCGGAAAGCACCCTATTCTTATGGTATTCTTATGATCTCTCTGTCCTAATTAGAGCACCTCACTCCCCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTTGGTCTTCTCCCACGGGAACTCAACGTCGGTACGGCCGAAGTGGCCGTACGCGGCGGTCTTCAGGTAGATCGGGCGCTTCAGGTCGAGCTCGTCGATGATGGCGGCGGGGCGCAGGTCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGATACCGGGTCGGCAACGCCAATAGCGTAGGCGATTTGGATCTCGACCTTGTGGGCCAGGCCGGCAGCCACGATGTTCTTCGCAACCCAACGGGTGGCGTACGCGGCGGAACGATCGACCTTGGACGGGTCCTTGCCGGAGAACGCGCCA # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //