Array 1 31876-29972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYA010000022.1 Salmonella enterica strain S15BD05371 22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 31875 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 31814 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 31753 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 31692 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 31631 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 31570 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 31509 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 31447 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 31386 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 31325 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31264 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31203 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31142 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31081 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31020 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 30959 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 30898 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 30837 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30776 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 30715 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 30653 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30550 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30489 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30428 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30367 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 30306 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 30245 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30184 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30123 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30062 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30001 29 96.6 0 A............................ | A [29974] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49426-48005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXYA010000022.1 Salmonella enterica strain S15BD05371 22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 49425 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 49364 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 49303 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 49242 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 49181 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 49120 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 49059 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 48998 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 48937 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 48876 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 48815 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 48754 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 48693 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 48632 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 48571 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 48509 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 48448 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 48387 29 100.0 92 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAATATGTTCCCCCGCGCTGGGGAGTAAACCGGGATATGTGAAGTTCAGGTGGCCCATTACGCA 48266 28 96.6 32 ..........-.................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 48206 29 100.0 87 ............................. TAGGTTATGCGCAAAATACAGTTATAATTGTTCTGCGCCAGCAGGGATAAAACCGGACGAGTTCTGGGAAATGGTTAGCTGATAAGA C [48197] 48089 27 89.7 30 .......--...................A TTCATCGGCAGCGTCACGCAATATGAAGAT 48032 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ============================================================================================ ================== 22 29 97.8 37 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //