Array 1 106291-104822 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTOV01000038.1 Pseudomonas aeruginosa strain AZPAE14999 AZPAE14999_contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 106290 28 100.0 32 ............................ AGCAGTTGGGCGGTCAGGCTGGGCGAGGCCGT 106230 28 100.0 32 ............................ AACCGCAGATGACGTTGGGCCGGGGCGTGCCG 106170 28 100.0 32 ............................ ATGGACATTCCCTTTCTCTCCGACATTCTCGC 106110 28 100.0 32 ............................ ATCAGAACTCCTCCTTTTCCATCAGTTGATGG 106050 28 100.0 32 ............................ AAAATAGGCGGTACGCTATTCCCTATCTGACG 105990 28 100.0 32 ............................ GCGAAGCAGAATTGGAAGGTTTCCATCAGCAC 105930 28 100.0 32 ............................ TTCCAATTCTGCTTCGCGGGCATCGTTGGCAG 105870 28 100.0 32 ............................ GTCGAAGAACGATCCGGGCAAAACGTTTTATT 105810 28 100.0 32 ............................ TCTACCGTCAGCGGCAGGCGGGCAAGGCACCC 105750 28 100.0 32 ............................ TTGCAGTCACCGTCGCCGGAGATCGAGGAGCC 105690 28 100.0 32 ............................ GATATCGAGCGCTGCTGGGCTTCCATCATCAG 105630 28 100.0 32 ............................ TGTCCGGGCAGTTGGCCGTTCTGGAAGGCTAC 105570 28 100.0 32 ............................ TAGCTGATCAGCAGGCCGACAGTCAGGCCTGC 105510 28 100.0 32 ............................ TACCCGAATACGACTTGCGCGAGGAAGACGGT 105450 28 100.0 32 ............................ AGCATCGCATCAAATCGTGCAGAACACGATAA 105390 28 100.0 32 ............................ TGGTCGAGCAGTTCGGCAAAGGGGCCGTGGTT 105330 28 100.0 32 ............................ TTCACCTGGTCGCCGGCCAGGCTGATCACTGC 105270 28 100.0 33 ............................ TACAAGGTCATGGCGCTCGGCAACGTGGTGGAA 105209 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 105149 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 105089 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 105029 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 104969 28 100.0 32 ............................ AGACAATCCGGACCTGCCGCCCAGGACGATCT 104909 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 104849 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGCACTCGCCTGGGAAGGCGAAACAAGAGGTCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGACCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCACGTAGGGCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 51-1482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTOV01000041.1 Pseudomonas aeruginosa strain AZPAE14999 AZPAE14999_contig_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 51 28 100.0 32 ............................ GCAAAGAGCGATCCGATGCCATGCGCGTCAAC 111 28 100.0 32 ............................ TTCTTGGAAGGTTATCTGCTGCAAACGGCACA 171 28 100.0 32 ............................ ACGGACGGTTTCGTGGTCTTCCCCCATGCCAA 231 28 100.0 32 ............................ ACCCAGCCCCGCACCACGTCTTCCGTGATGTC 291 28 100.0 32 ............................ ATCGCAGGACAGGGCAGAAATCATCAGGAAGC 351 28 100.0 32 ............................ TTCATCGTGCCGATCGCGAACTGGTCGCGCGA 411 28 100.0 32 ............................ GCATTGGGCAGGCCGACCAGCTGATCGATACC 471 28 100.0 32 ............................ GAGACTTCAAGACGTTCCGGCGCGGCCGGAGC 531 28 100.0 33 ............................ ATTGCGCCAGATCCCGAAAGCTCTACCCGAATC 592 28 100.0 57 ............................ NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 677 28 67.9 32 NNNNNNNNN................... CGTGATGGGCGCCAACATGCCGTCGACACTCC 737 28 100.0 32 ............................ TGAATGCGAAACTTCGTGCTGTAGCTACCCTC 797 28 100.0 32 ............................ AACTGCTCGGCGGGCACCAGTTGGCGGTCGAT 857 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 917 28 100.0 32 ............................ TGGTTACAGGCGGTCTGGATCGACGCCGGGCA 977 28 100.0 32 ............................ TCGTCAATCATCGCGGGGTCCCAGCGATACAG 1037 28 100.0 32 ............................ GTGCCGCTGGCGTAGTTGACCGCATCGACGCG 1097 28 100.0 32 ............................ TCTTGGGAGTCCCGGCAGGTCAAGGGCCGCGA 1157 28 100.0 32 ............................ TCGAAAAGATCGCCCAGGAACACGCAGCGCCA 1217 28 100.0 32 ............................ GACAAGGACCGTCGCGACAAGACCGAACCCGA 1277 28 100.0 32 ............................ AACAGGCATTCACTGGGTCGTCATCGACAGCC 1337 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 1396 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 1455 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ========================================================= ================== 24 28 97.3 33 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GTATAGGCAGCTAAGAAATGTCTACCCAGCGTATTGGCCATTCCGTTGGCG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12613-10124 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTOV01000041.1 Pseudomonas aeruginosa strain AZPAE14999 AZPAE14999_contig_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12612 28 100.0 33 ............................ AGGACAGAAGAACAGCAACCTTCGCGCCGACTT 12551 28 100.0 32 ............................ GCGTTCCCCGTGCCGGGGTGCTGCCAACCATA 12491 28 100.0 32 ............................ TATCATAGAATATGCTGTCGGTAATGGTAGTA 12431 28 100.0 32 ............................ ACGTAGCGGATGACGGAGAGTTCTTGGGCGTA 12371 28 100.0 32 ............................ ACCAAGGGGGTTCTGGCGCAAGCCAGCACTGA 12311 28 100.0 32 ............................ TTGATGGTCTTGTCGAAGGAGCCTTGCTTCGG 12251 28 100.0 32 ............................ GAGCTCAAAGAAGGTAATGATATGACATTAAC 12191 28 100.0 32 ............................ TGGAAGACATCACGGAAGACGTGGTGCGGGGC 12131 28 100.0 32 ............................ AAGATTGGTCGTCGCCGCGTGGTGAACCTGCA 12071 28 100.0 32 ............................ AATGAGCGTTTTACACCACTAACGAGCTTTAC 12011 28 100.0 32 ............................ TGCACCGTATTCGCCGTGACCTCGACCGGGGC 11951 28 100.0 32 ............................ TGTAACGGTGAACCCCACTATTCCAGACTCTT 11891 28 100.0 32 ............................ GAATCCGCCGAACAGTTCTGGCCGTTTGTCTT 11831 28 100.0 32 ............................ TATTCGGTGAACGATGGCGGCGGGACGAATCG 11771 28 100.0 32 ............................ GACGACGGCGACGCGCTGAGGCTGGCTGTGAA 11711 28 100.0 32 ............................ CAGTCAGAGGGGAACGACCCGGCTCCGGCAGA 11651 28 100.0 32 ............................ AATACGTATAGGTCGGCTCCAGTTTCATTCTT 11591 28 100.0 32 ............................ ACATGCGACCACCATCGAGAGGAAACGTGCTA 11531 28 100.0 32 ............................ TTAGGCCTTCTTAACGCCGCGCTTGCCCAGGT 11471 28 100.0 32 ............................ AGCATGTTAGCCGCCTCCGCTGGGATCATTGC 11411 28 100.0 32 ............................ ACTTACCGGGTAGCTGTACCTGATGACGTACT 11351 28 100.0 32 ............................ AAGACCAGCGAGATCCTGGTCAGCCACCTGGC 11291 28 100.0 32 ............................ ATTGCTGGGAGACGTATTCGGCCAGTGTCATG 11231 28 100.0 32 ............................ AGCACGGCATTGCGGAAGTCATCGGAGCCAGC 11171 28 100.0 32 ............................ TTCGGACACCAGCACCACGCGTGACGTCTTGC 11111 28 100.0 32 ............................ CACGTGTCCAGCCGACACTAACAACCCTGGAA 11051 28 100.0 32 ............................ GCCAGGTGCGCGCGCGATGACGGTGAGCCTTC 10991 28 100.0 32 ............................ TTGACCCATCCCAGGATGTAGCGGACGACCGG 10931 28 100.0 32 ............................ TACGGACCCGACTGATCCTAAAGACCCTGGTG 10871 28 100.0 32 ............................ ACGGAAATTCTCACCCAGGCCAGCAGGCGTAT 10811 28 100.0 32 ............................ GTTGGCATTGACGAACTCTACATCGACGCCGT 10751 28 100.0 32 ............................ ATGTTCTACAACGCCGAGGAGCGCAGCTGGTT 10691 28 100.0 32 ............................ GTGACGGTCACGCATGCGCAGCATTTTGAAGC 10631 28 100.0 32 ............................ ACCTGCGCGTCGTGCTGGTCCTTGAAGTAGTT 10571 28 100.0 32 ............................ GGCTTGTCTGGGAATCGTGCGCGGTCTTCGAG 10511 28 100.0 32 ............................ TACAAGTTCAAGCGCGACGGCAAGGAATGGGA 10451 28 100.0 32 ............................ GACAAGAAGCTCCAGGGCACCGGCGTGAAGAT 10391 28 100.0 32 ............................ GGTGTCCTCAACGCGAAGCTGACCGAACTGAA 10331 28 100.0 32 ............................ ACCCAGCGCCGCCGGGATCTTCTCCGCCACCT 10271 28 100.0 32 ............................ TGATTCAGGAGTGCTGGCAAGCGGTTACAGCG 10211 28 100.0 32 ............................ AGCAGCGGCTCCAGAAAGAGGGGCGCTGCCTG 10151 28 96.4 0 ..C......................... | ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TTCGACGCCGCCAGGGTTGCCGCATCGCCGTCGTTCACTGCCGTGTAGGCAGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGTAGGCAGCTAAGAAACTCGAACCCACCTCGGCCCCAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //