Array 1 17640-16652 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZED010000206.1 Salmonella enterica isolate 8696_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 17639 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 17578 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 17517 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 17456 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 17395 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17334 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 17273 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 17212 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 17150 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 17047 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 16986 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 16925 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 16864 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 16803 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 16742 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 16681 29 96.6 0 A............................ | A [16654] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51541-53582 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZED010000146.1 Salmonella enterica isolate 8696_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51541 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 51602 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 51663 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 51724 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 51785 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 51846 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 51907 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 51968 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 52029 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 52090 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 52151 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 52212 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 52273 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 52334 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 52395 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 52456 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 52517 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 52578 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 52639 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 52700 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 52761 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 52822 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 52883 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 52944 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 53005 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 53067 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 53128 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 53189 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 53250 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 53311 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 53372 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 53433 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 53494 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 53555 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //