Array 1 163499-160785 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOP01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712426, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163498 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163437 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163376 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163315 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163254 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 163193 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 163132 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 163071 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 163010 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 162949 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 162888 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 162827 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 162766 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 162705 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162644 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162583 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162522 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162461 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162400 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162339 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162278 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162217 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162156 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162095 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162034 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 161973 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 161912 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 161851 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161790 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161729 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161668 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161607 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161546 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161485 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161424 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161363 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161302 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161241 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161180 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 161119 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161058 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 160997 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 160936 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160875 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160814 29 93.1 0 A...........T................ | A [160787] ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182110-180006 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZOP01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712426, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182109 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 182048 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 181987 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 181926 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 181865 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 181804 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 181743 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 181682 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 181621 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 181560 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181499 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181438 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181377 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181316 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181255 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181194 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181133 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181072 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181011 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 180950 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 180889 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 180828 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180766 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180705 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180644 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180583 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180522 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180460 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180399 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180338 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180277 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180216 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180155 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180094 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 180033 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //