Array 1 2894284-2893096 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049348.1 Escherichia coli strain 3R chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2894283 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 2894222 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 2894161 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 2894100 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 2894039 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 2893978 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 2893917 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 2893856 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 2893795 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 2893734 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 2893673 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 2893612 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 2893551 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 2893490 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 2893429 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 2893368 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 2893307 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 2893246 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 2893185 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 2893124 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2920869-2919986 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049348.1 Escherichia coli strain 3R chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2920868 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 2920807 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 2920746 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 2920685 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 2920624 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 2920563 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 2920502 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 2920441 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 2920380 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 2920319 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 2920258 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 2920197 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 2920136 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 2920075 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 2920014 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //