Array 1 240244-240513 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUTY02000002.1 Methylicorpusculum oleiharenae strain XLMV4 XLMV4_contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 240244 28 96.4 33 ..................T......... TGTGCTGTAATCGGCATTAGTCACTTGAGCAAG 240305 28 100.0 33 ............................ CGACTATGAGCGAATCCAAGCAATCGCGTCTCA 240366 28 96.4 33 .................A.......... TCCGCAGGGCGCTAGTAAGAGGTAGCACCCAAT 240427 28 100.0 31 ............................ CAACTTAGGATCGCAGCCTAAAAAGCTTCGA 240486 28 71.4 0 ...........A.T...A.CT..C..TT | ========== ====== ====== ====== ============================ ================================= ================== 5 28 92.8 33 GTCTTTCCCGTGCGTGCGCGGGTTATCG # Left flank : GCAAATCGGAAAAGCCGCCACGGCCGCATAAAATGGCCGCTCAATCCGATAGTCCGGAAGCCCAAAAAGATCAAGCCCATGCGGCGTTGTCCTTTACCGAATTCTCCGCGGCCATCAAGGCGGCGCGTGCGGCGAAACGCCTGCCGATTCTCAAGCTTGCGAACTTGTCCGGTTGTGATCCAATACTCATTAATGAAATTGAGTCTGGCAAATACGGATCAGCCGCTGTTAGGGACATAGAGAATTTGTTGAGAGTTTTAAAAATAAAATTAACGAGATAAGACAGATAAGAATATTTAACTTCGGGTTGTTGCCCGGAAAATCTGGTGGTGGCGGACTAGCCAAAAGCCCACCGAAACGACTCTGACTCGAGCAGACATGATCCATGTAGAGAACATCGTCCTTTAGTGCGTAGATTATGTCAATTCGCCAAAAAGGGAATATTTGCAAAAACTACTGCCTGTAGTATAGTGAATTTAGAACTGACACTAAATGTCGGT # Right flank : TTGTGCAATCCGATGAACATTCAGTGTTGAACGCCCATCCATCTAAAAACACACCCCAAAAAAACGGGTATCCGATAAGAATCGTGTGGAAACTGAAAAATCACTTTCGCCCATTGTTCATCGCAGATTTTATGGTAAAAAGCTCAAAAAACGCCGGATGCATAACTCTATCGCCTTTTTCCCAGTGCTGCCAAGTACGCAACTCAGAGTAAATCAATGATGCCGCCTGTGATTGGGTTAAACCAGCGTCCATGCGGGATTTTTTGATTTGTTCTGTGGATGGTGATTGCATGTTATTCGCCATCGGGATTTCTCAATTTTCCTATGATCTGACGGGCATTATAGGTTTGGTTGTATCCGGTATTTTTATCGCATGTATCAATTAACAATTCATTGTCACCTTGAAGCTCTGTTAACGATAGAGCCATTATTTCTACACCGTTTTTATCAGTAATCACCAATACGTCGCCTAAATTTAATGTTGTTCGCTTAATCATGAC # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGTGCGTGCGCGGGTTATCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4170856-4167767 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUTY02000001.1 Methylicorpusculum oleiharenae strain XLMV4 XLMV4_contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4170855 37 100.0 35 ..................................... TTCTGTTTTTTTCGCGTAGTTTTTCGACCAGTTTT 4170783 37 100.0 33 ..................................... GTTACTACTTTGTTAAACTTTCTCATGATACGT 4170713 37 100.0 35 ..................................... AATGTTAATTAATTACATTACATTATTGCTATTGA 4170641 37 100.0 32 ..................................... TCGATAGTTTCTAAAGTATAACCGCTTTTTAA 4170572 37 100.0 33 ..................................... GAGAAACTCGATACTCTTTTCTTCACTTTGTTT 4170502 37 100.0 31 ..................................... AGCATTAGCATTTAGCATTAATGCTTTTTTG 4170434 37 100.0 34 ..................................... GAATTATCTTTGTTTGCGGCTTTCTTATGAAACG 4170363 37 100.0 34 ..................................... GTTACCCTGCATACATAAACAATCTCAAAATCAA 4170292 37 100.0 35 ..................................... TTTTTTTGCAATAGCGGTTAAAACTATGTCTTTAA 4170220 37 100.0 34 ..................................... AAGAAAAAAGTTTTTCATTTAAACCGCCTGGATT 4170149 37 100.0 34 ..................................... TCTATAGAATGACAATCTATCTACAGATATAATT 4170078 37 100.0 34 ..................................... TATCCATCAATCGGTGTTCCTTCACCGTGATTAC 4170007 37 100.0 32 ..................................... TCATTTAATGCCATATGGTACTTAACTTTTGA 4169938 37 100.0 33 ..................................... AACAATGACTGACGATTATCAAGCAATTTTTTA 4169868 37 100.0 35 ..................................... AACTGGTCAAGTAATGACTGACGATTATCAAGCAA 4169796 37 100.0 39 ..................................... TCGCTCCGGTAGATAGTAGCTTCATAAAACGTCGGTGGG 4169720 37 100.0 36 ..................................... TCTATCGTTAAAGTACTAGCGTACTCTTTTAAGTTC 4169647 37 100.0 33 ..................................... GCAGTTTGAACTGCAGGCTCAATGGCATATATG 4169577 37 100.0 31 ..................................... GTATAAATTGTTCATGATATTTCATCCTCTT 4169509 37 100.0 34 ..................................... AGCACAATGTTGTATAGACCGTCATTCTGTAATT 4169438 37 100.0 35 ..................................... TTTGAAAAACCCATTGATTCAATATCTTTTTTAGT 4169366 37 100.0 33 ..................................... AGCAACGTGTTGGGTAAGATTCAAAGTGTACAT 4169296 37 100.0 34 ..................................... CAACTATAGTTGTTACACCGATAAAGGCGCTAAG 4169225 37 100.0 35 ..................................... ACTTTTAGTATTGTTGACATGGTAAACCCTCTTTT 4169153 37 100.0 34 ..................................... TGAAGGCAATGGGGTAGTCATAGTCTAATGCCCC 4169082 37 100.0 35 ..................................... TCTTCACTGGTGGGTAAACTAGCAAATGTAAGAAT 4169010 37 100.0 34 ..................................... CTCCTGCTCAGCCGGTACGTTGCCTTTTTTATTG 4168939 37 100.0 34 ..................................... ATGACGGTGGCGTGTGATGGGTTGATATGGGAAA 4168868 37 100.0 35 ..................................... TCTATATTAAAACCCAATTCTGTAACATATCTTTT 4168796 37 100.0 35 ..................................... TGTTAAAGAGTAGCGGCTACGGCGTCAATTACTAC 4168724 37 100.0 35 ..................................... ACCACTTCGCGATACATAGTCGCAAAAGTATTCAA 4168652 37 100.0 33 ..................................... GAATTCGTTTCTTTTAGTGCTCATTGTTTAACC 4168582 37 100.0 35 ..................................... TCAAATACTGGCGACAATGCGCGTGACGATGCGAT 4168510 37 100.0 33 ..................................... CTTCTCATGTTGTTCTCCAGGCTGGCGCATCCT 4168440 37 100.0 34 ..................................... CGCATTGTTGATCAACTGCCAGTTCATATACGCT 4168369 37 100.0 31 ..................................... ACTTCAACTTTAACTTCCCCATCTAGCCCCT 4168301 37 100.0 34 ..................................... CACAGTTGTAGGTGTAAGGTGAGCAAAAGGATTA 4168230 37 100.0 35 ..................................... GATATTATTGATACTAGTAGGCTTATAGATTCTAA 4168158 37 100.0 34 ..................................... GATAATAAATGATTTAATAAGTTTGGTGTTCTTT 4168087 37 100.0 33 ..................................... CAGTACCTCTATCTGTACCTGAAGAGAATTCTT 4168017 37 100.0 36 ..................................... GCGATTTACCGCAAAGGGCGTCAACCATTGCAGACT 4167944 37 97.3 34 ..........A.......................... TCAGTTTTGACGTTTGAATTGTGCAGCTCAGCAA 4167873 37 97.3 33 ..........A.......................... GCACTGAGTGCGGTTAAGTCTGTATTAGAACGC 4167803 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ======================================= ================== 44 37 99.8 34 ATATAAATAAGAGACCTTAATAAGAAGGGATTAAGAC # Left flank : GGAGGCCCGTTTTATCGCTAACGGCGGTTGGCTTGAATTGCATACCTATGCCTTGTGCCTTAACTTGAAAAAAAGCCTGGATATTCAGGATGTCGCAGCCAACATCACCATTCATCGCAAACCGGGAGGGAAAGACGAGGTAAAAAACGAAATCGATGTCGCCTTGATCAAAGAAAACCGGCTTCATTTGATGGAATGCAAAACCAAACGCTATCAACAAGACAAAGACGCCGATGCGCTTTACAAACTGGACAGCTTGAGGGATTTGGTCGGCGGCCTGCAAGGCCGTGCCATGCTGATTAGTTTTAATGAATTGGACAAAACTGCCCGCGCTCGCGCCAAAGAGCTTAAAATAGCCGTGCACTGCAAAAGTGAATTACGCAATTTACAGCAACACCTCACCCATTGGCTAAAATCGGATAGATAACTTTTTAAAAATGAAAAATCCTGTTAACCACCCTAATAACCTACTGATAAATAAAGGAGATCAACGCCAAGCG # Right flank : GTGCGTCCAGACATACCCATTAACTTGTGAGGCTATATAAATAAACAGGGTAGGATTCTCAGATATAGGATGTGCTGAGGTACGAAGCGCATCAATCGCGATGGATGCGCCTCCTATCGTCGGCACATCCTATAAATTGTCCCCCCCTTTTTTAGAATGGGAGATTGAGGGGGATATGTTTAAAAATGACTGTGATGGCATTAAAAGTGGGCGTCGCCCCGGCATGGATTGCCGGGGTCCAGAAGCCATGGAAGGCGTTGGGCTCTCACATCCCTGTGACCTGGGTTCCGGCAATCCCTGCCGGAATGACGGTGTTGATTTACTTTCAACTAATAACGCGGACATAACCTTTTTTCAAATATAAATCAGAGACCTTAACAAGAAGGGATTAAGAAGTGCGTGCAGACATACCGATTAACTTGTGAGGCTATATAAATAAACAGGGTAGGATATCTAAGATATAGGATGTGCTGAGGTACGAAGCGCATCAATCGCGATCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATAAATAAGAGACCTTAATAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 5115656-5125022 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUTY02000001.1 Methylicorpusculum oleiharenae strain XLMV4 XLMV4_contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================== ================== 5115656 28 100.0 32 ............................ AATAAAACAATCGCCTTATTTTCAATGCTCGT 5115716 28 100.0 32 ............................ TTCTAAATTTGCCGCTTCAGCAACGGCAAACT 5115776 28 100.0 32 ............................ GCAATTAGGAGTTACAGACTTGAGTAGTTTTA 5115836 28 100.0 32 ............................ GTTATGACGCTTTTCAAAAAACAATTGAACAG 5115896 28 100.0 32 ............................ TATGAAACCCGCTCCCAGTGGGTAGAGCGCGA 5115956 28 100.0 32 ............................ TTTCAGGATGTGCCTTAGCTTCCTCTAAATTA 5116016 28 100.0 32 ............................ ATTCGAGTCTCCGGTAGTGGTTATTTAATACT 5116076 28 100.0 32 ............................ ACTCCCTGAAAAGCTCTTTACTAAACGGCGCA 5116136 28 100.0 32 ............................ TTTCGGCGTTACATTCGTGTTCGCCGTTGTTG 5116196 28 100.0 32 ............................ ATGAAAGAAAAGAGCCGGTATTTTTAAACCCG 5116256 28 100.0 32 ............................ ACCAAAGCACGAAATAAACGCGCTAGAGCTCC 5116316 28 100.0 32 ............................ CTCACATTGGAGATTGAATTAATGAATATTGA 5116376 28 100.0 32 ............................ TATTAAAGTAATTAAGGTTAAAGGCTGGAGAA 5116436 28 100.0 33 ............................ CTGAAAAAGGCGGAACATTCGGGCGTTTCAACG 5116497 28 100.0 32 ............................ TCTGATAGAAAAACAAATAACTGAATTGACAC 5116557 28 100.0 32 ............................ ACCAAAGCACGAAATAAACGCGCTAGAGCTCC 5116617 28 100.0 32 ............................ GGCAGAATTGATGCCCTGGGTTTTTGATGGTA 5116677 28 100.0 32 ............................ AGTCAAGAAAGAGGGCTGGGTGAGGTTATTTA 5116737 28 100.0 32 ............................ ATTAGCACAGGTCATCTTACAAATTACCCACG 5116797 28 100.0 32 ............................ GTCCGAGGCCGAATGGAACAACGCCGATTTTA 5116857 28 100.0 32 ............................ ACTGCACTGCCACATTATCAACAACGGCGAAC 5116917 28 100.0 32 ............................ TAATGCTGATTGCATAGCCACCGCCACGTTTG 5116977 28 100.0 32 ............................ GTTAACGGACCAGTAAAGCGCTCCAGCTACTT 5117037 28 100.0 30 ............................ GAAGATGGGTTGCCCAGCCACAACGCGCTG 5117095 28 100.0 32 ............................ TGCCGCAATGATGAAAGAGCCAATGAATCGGT 5117155 28 100.0 32 ............................ GCTTGAAAAATTATCAAAATCAACTGTACTGA 5117215 28 100.0 32 ............................ GCAACTAGGAGTTACAGACTTGAGCAGTTTTA 5117275 28 100.0 33 ............................ TAAACGCCCGCTGTGCCTGTAGGTCAGACGCTT 5117336 28 100.0 32 ............................ TTTAAACTGTTAAATGCTGAGCTTACCCGGTT 5117396 28 100.0 32 ............................ GGTCGACGCTTCATTGCTTTGTGCGCAATTAT 5117456 28 100.0 32 ............................ ACGAAGGCGGCATTGTCGGCCAAGGGGGCAGC 5117516 28 100.0 32 ............................ GTGAAGCTTGGCGATACGGATATGAAAACGTT 5117576 28 100.0 32 ............................ ACATTTTGATAGCAAAAGTAAGATGCTCTGGC 5117636 28 100.0 32 ............................ TTTAATGAGCCATGCTAAAACAGAAGGTTTTA 5117696 28 100.0 32 ............................ TTCTACAGATATTATAAGTCTTTCCGGTATCT 5117756 28 100.0 33 ............................ TGTTATTAAAGAAGTCCCGGGTAACTTTTTTGT 5117817 28 100.0 32 ............................ CACTGGCGAATTTAGAATTGTAGATTGCTAAT 5117877 28 100.0 32 ............................ AAGTGGGATAAATGAAGCATCTGAAAGTGACA 5117937 28 100.0 32 ............................ AATGGCAAGTGCCAAACATGGAAGAGTAAGAA 5117997 28 100.0 32 ............................ AAACTCAGGTCGCAAAACGGCTTTTGTTTGCG 5118057 28 100.0 32 ............................ GCCGAAAATAGCCTCGCCGTTTGTAGCTTTAC 5118117 28 100.0 32 ............................ ACCAACAATCAGCTGGCGGGGGCTGGATTTTA 5118177 28 100.0 32 ............................ ACTAACGGGCTGAACACCATCTATCGTGGATT 5118237 28 100.0 33 ............................ ACAAAAAGACATCATGACAAAACTAACCTTATC 5118298 28 100.0 32 ............................ ATTCGGTTAACTGACGGCCAGGTCTACATGAT 5118358 28 100.0 32 ............................ TTGTAGTTGGCGTTAAAGTTGGTGACATCCAA 5118418 28 100.0 32 ............................ TTCTTTGTGCGATCTTTGACGCGCATACAGGA 5118478 28 100.0 32 ............................ ACCCGGCAGCCACTCCGACAACAGCGCTTGAA 5118538 28 100.0 32 ............................ GATAAAATACCGTTTTTCGTCTTCGCACAGCC 5118598 28 100.0 32 ............................ GAATTGAGCGGCATTTTGCCCATGACTTGGAT 5118658 28 100.0 32 ............................ TAAGTGATGATTTAGATAAAATCAATTTAGCA 5118718 28 100.0 32 ............................ GTAAACCTCACATAATTTAGTTATTGTTTTTG 5118778 28 100.0 32 ............................ GCACTGACCAAAGCGCAGGGCGTCGTGGCCAG 5118838 28 100.0 32 ............................ TGCTGACGCGTATGACTATGCTCAGGAGTGTC 5118898 28 100.0 32 ............................ AGGCAGGGCGATTACGTTGCTTGCGCTGGTGA 5118958 28 100.0 32 ............................ ATGGGTTACTCCAAAGTGAAATATAAATTAGT 5119018 28 100.0 33 ............................ CGTCAGCACATCCGTGTCAATCTCCCCCACCTG 5119079 28 100.0 32 ............................ TGTGCGCGGTCTGCCGTCTGCTGCGTGGACGT 5119139 28 100.0 32 ............................ AAATCAACCGCGAAGCCCTGGCCCGAGGCCGC 5119199 28 100.0 32 ............................ TACCAATTCCGCAAAACGCTCTTTATGCATAA 5119259 28 100.0 32 ............................ TTCAATAAATACTGGGCTATACTCCAGTGCCT 5119319 28 100.0 32 ............................ CATGACTATCGGTGACAGTAATTACTGAGCTT 5119379 28 100.0 32 ............................ GCAAAAGCATTTGAGGCAACTCCTGCAAAAGC 5119439 28 100.0 32 ............................ TATTTCTTTTTGGCTGAAATACTCTCTTTTTA 5119499 28 100.0 32 ............................ TTAACAACCTTGGCCCCTTTGCGCCTGCTGCA 5119559 28 100.0 32 ............................ TTACCGGCCAACAGCTCTTTAACCGTCGACGG 5119619 28 100.0 33 ............................ ATGCCAATTGGCAATAATCCCATAACCCTATAC 5119680 28 100.0 32 ............................ GATCGGTGCAAAGGCTTGCGAGATTTCAAAGC 5119740 28 100.0 32 ............................ TATTTGCAGCGAGCTGCCCATAACAACATTTA 5119800 28 100.0 32 ............................ AATTGCGTAATTTTATTACTAGCCATATCAAT 5119860 28 100.0 32 ............................ ACTTGATATACAAAGTAATGTCATAACAATAC 5119920 28 100.0 32 ............................ GATAGCAACAATACAACCAATATCAAAAGCTA 5119980 28 100.0 32 ............................ GGAAATCCAATAACACCTTGTCATTAGCAATT 5120040 28 100.0 32 ............................ ATATAAAAAGGCTATCAAGGCTGCATTGCTCA 5120100 28 100.0 32 ............................ ATAATATAATGCATCCTCAAGCTCTTTATATA 5120160 28 100.0 32 ............................ AGCGATTCGTTTTTCTACGATCTGGCCGGGCT 5120220 28 100.0 32 ............................ TACGGGTTTTGCGTACAGTGGAACAATAACAA 5120280 28 100.0 32 ............................ TACCAACCAGACTGGTGCCTGATGCAAGGCCC 5120340 28 100.0 32 ............................ CTTACGAACGTTCCCAGCCAGCGGCCAGGTAG 5120400 28 100.0 32 ............................ ATAATCTGATCCATTGCCACCATTTCATTGGC 5120460 28 100.0 32 ............................ GATGACGCTCAACGCGCGTTTGGCAAATACCG 5120520 28 100.0 32 ............................ GATAAAATGCCGCACGGTTTTGCCTGGGTAGT 5120580 28 100.0 32 ............................ AGTCCAATGCAGTTTGCAAGAGGGCCTATTAT 5120640 28 100.0 32 ............................ ACCAGAACCGGCAAACGCTGTAACCTGGTCCA 5120700 28 100.0 63 ............................ CTTACGAACGTTCCCAGCCAGCGGCCAGGTAGGTCCGCTGCCGCACGGTTTTGCCTGGGTAGT 5120791 28 100.0 32 ............................ AGTCCAATGCAGTTTGCAAGAGGGCCTATTAT 5120851 28 100.0 32 ............................ ACCAGAACCGGCAAACGCTGTAACCTGGTCCA 5120911 28 100.0 32 ............................ AGGTAGTGGTTCTGGCAACCAAACCTGCATAC 5120971 28 100.0 32 ............................ ATCGACCAACTTAGGATGCTGAGTTATCAAAA 5121031 28 100.0 32 ............................ GACACGCCACGAAAACAAAAAAGCCATATATT 5121091 28 100.0 32 ............................ TGCAGTGGGGGTCTGGGGAAAATGTACACGTA 5121151 28 100.0 33 ............................ GCATTAAAGCCATCGAACATCAATTAGATATTT 5121212 28 100.0 32 ............................ ACCCAACTCCCGAGCATCCCTCGGCAGTTCGC 5121272 28 100.0 32 ............................ ATTGCTCGGACTGCCGTTCATTCGCGTCCATG 5121332 28 100.0 33 ............................ CAGCGGCGCAAAGCATCGCCAACCGTACACTTA 5121393 28 100.0 32 ............................ GAGCCCGGAGGCGTCAAGGATACCTTCCAGGA 5121453 28 100.0 32 ............................ AAAATTGGCGTTGGATTTGCAGCTGTAGCCGC 5121513 28 100.0 32 ............................ CGGCACATCAATAATTTTAAAGCGGGCACAGG 5121573 28 100.0 32 ............................ GCGGACCTGTCCAAGCCGGTCCGGGACCTGAT 5121633 28 100.0 32 ............................ TCGGACTTTATCTTATCCATGCCCCCCATGAA 5121693 28 100.0 32 ............................ GTTCAAAGATGGAACGGAAAGCTTAGTCGATA 5121753 28 100.0 32 ............................ TGCCCAGGGCAAAAAGCGGTTTTGCTTGTCTA 5121813 28 100.0 32 ............................ TGGTTATCATGTCAAAAATGCATGTTATCCCG 5121873 28 100.0 32 ............................ AACGTAGGGTTTGTTAGGCACGATGTAACATC 5121933 28 100.0 32 ............................ TCATTTCGGCATATTACACTTGCAAACTGTAA 5121993 28 100.0 32 ............................ GATAATTCCGTCATTCTTCATTGCATCAATAA 5122053 28 100.0 32 ............................ CCTGTAGACCGGCTAAATAGCCCTGTTCCTGC 5122113 28 100.0 32 ............................ GCGCGCCTTTGGTGATCGGTCATCCTAAAACC 5122173 28 100.0 32 ............................ GATGGTTACTTTATTCGCCGGGCACAAATAGG 5122233 28 100.0 33 ............................ GTAGCCGCTTCGGCTTTCTCCCATCCGGTGAGC 5122294 28 100.0 32 ............................ TCACGCACCACGCCCTCAGGGTCCTGGTTGTC 5122354 28 100.0 32 ............................ AAGCTTCCCGCGCGGCATTGCTTTGAATCAGA 5122414 28 100.0 32 ............................ AAGCGCCTGGAGCAGCACAGCGGGCGGTTATC 5122474 28 100.0 32 ............................ GTGTTAATGTTTTAGTAACCGTTTACACGGGA 5122534 28 100.0 33 ............................ CCACAAAAAATTAATTTATGCCCTACGCCACTG 5122595 28 100.0 32 ............................ TGAGCAAATTCATTAATGTTATTTGCTCTTTT 5122655 28 100.0 32 ............................ CGGTGATAAGCAAGCCGGGGCGCTTTACTGTG 5122715 28 100.0 32 ............................ ACTCGACAAGCGCCCCGAAAAACTGAGATATG 5122775 28 100.0 32 ............................ CGGCATGCCTGGCATTGGCCCAAATACGGTTA 5122835 28 100.0 32 ............................ GTCTTACGGCATTAAACATCCAATTAAACTCT 5122895 28 100.0 32 ............................ TACTCTCCGACGTGGCGCTTAGTCGCTAAGAT 5122955 28 100.0 32 ............................ TTCGAGTATGTGGCCGTGCCTGAATTTCATAA 5123015 28 100.0 32 ............................ GATGGCGAGCTGTCATTTACTGAAAACTATAC 5123075 28 100.0 32 ............................ GATAAAGTCATCGCTCAAAGAGCCCGCATCAG 5123135 28 100.0 32 ............................ ATTCAAGCAGCAAGAGCAGGTGTTGTTTTATA 5123195 28 100.0 32 ............................ TCACGTACTGTCTCTGGTTTATTACTCACATC 5123255 28 100.0 32 ............................ CTCAGGAATCCTGATGGCCGTGCTGCTCTGGA 5123315 28 100.0 32 ............................ TGTGGAATGACGACGGCACCCGGAGGAGTTTA 5123375 28 100.0 32 ............................ AATTTACCCAGCTCCGGTATGTTGTCTGGAGA 5123435 28 100.0 32 ............................ TTGGTAATATCGCGGCCATTGCCCGCGGTGGC 5123495 28 100.0 32 ............................ ATCCACGAAGCGCGCTCAGTCTTGAGCGATTC 5123555 28 100.0 32 ............................ GCCTTGAGCGGGGGCAGACAAGCCAGCATCAG 5123615 28 100.0 32 ............................ CAAACAAAAAGAAATCGGCGAGTTAACCGAGG 5123675 28 100.0 32 ............................ ATCGAATAACCCTTCTAATGTTTTGATTGATC 5123735 28 100.0 32 ............................ TCTACAGCCTTCATTCTGAACAAATTTAAACT 5123795 28 100.0 32 ............................ TGTCGTCAGATGCGCTAACAGCAGCCAAGGTA 5123855 28 100.0 32 ............................ ATCATAGAAACGGATTTTGGACGTTTAGACGA 5123915 28 100.0 32 ............................ TATCAAAAAGATTAAAAGAAAACTCATGCCGC 5123975 28 100.0 32 ............................ TCATAAGGATCAATGTAAGTTTCGTCTTTAAT 5124035 28 100.0 32 ............................ ACGCCGGACAATGACGACTGGCGCGGCTATGT 5124095 28 100.0 32 ............................ GCAAACGGTAGACGCTGGGCAATATACTGATC 5124155 28 100.0 32 ............................ AATTTTGCCGCGTATAAAGCGGACATCAAAGC 5124215 28 100.0 32 ............................ AAAGTGGCCGCATTTACCGCCCGCTTGATGCT 5124275 28 100.0 32 ............................ GATAAAATGCCGGTAATCAAATTCAATGTTAA 5124335 28 100.0 32 ............................ GAACGACAGAAGACAGGAACATGCTGTAGCTG 5124395 28 100.0 32 ............................ GAGTAAGTCGGCAGTTTCGGTCTGGCTTTCTG 5124455 28 100.0 32 ............................ TATCAACTGAAGTGAATCTAACCTCGAAACGT 5124515 28 100.0 32 ............................ ATTGAAACAGACACAGCACCAAAGAAAAGACC 5124575 28 100.0 32 ............................ ACTAGGACAATCAGGAGGCGGAATACACATAC 5124635 28 100.0 32 ............................ ACTAGGACAATCAGGAGGCGGAATACACATAC 5124695 28 100.0 32 ............................ AGGTGTTAACGCCCCCGGCCGTTTTGGACGAT 5124755 28 100.0 32 ............................ GCGCGCCACTAAGCCGACGGCGATGAGGATTC 5124815 28 100.0 32 ............................ ACATAGAAAGTTACACGGTGGTGGATGAATAC 5124875 28 100.0 32 ............................ TCCGGGTAATCCGGTTCGGGCAGCGCCGGCGG 5124935 28 100.0 32 ............................ CGAACAACCCGAAACCGGTAGTTCCGGAATCC 5124995 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =============================================================== ================== 156 28 100.0 32 GTCCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : GATCCATTTTCTTTCGCGGCATAATGCGGCAAAATCCCGCTCACCCCATAAGCTGCCGAATGGGGTGAACGGGATTTACAACTTTACAGACTTGATTTGGCTTCACTCAACCCGCGTGTATTTTAGTAGGTGGAGGTAATGTAGCTGACACAAAAGTCATCAGCCGGATTCCTAGAGTATTTGGACTCATCAATAACAGATTATCCTTTTACGGTAAGTCCATAAAGGAACCACTCATTCCCGATAGTCACTTAGCAATTCGTGACACCTCGCCCTCGCCGTATTGAAATTTAGGAAAATTTACTGCATGTATTAGGCAAGCGAGATGCTGGCTGATTATATAAACACAAAATCAAACTGACCGGTTTCGACCCAAGTTTTTTAGGCTCTTTAACAACATAGAAAAATCAATCAGTTACAATTGATCAAAAAATAATGGTCAAAACAAGAATTTCCAGCTAAGTACTTGTTGCCATTATTTTTTTGTTCTTTATACTTCA # Right flank : ACGTCTAGGAGGCTGTCCGAGAATTGAATTAGTATGATATCAGTTCATATCATGTCCTGGGAACGAAATGCAGGATCTGGATGATTATTTAACAATATCAATAAGATAAGGTATAATTATTAAAAATAATAGACCTTTATGCAGCGATGACGATTCCCTTCAAATCCCGACCGGTTGAGTTTCATCAATACCAATTATTTCCCGGCAATGTGTTTGACCTCCTTCCCGAGGATCATGAATGCTTCCTCTACGGCGAACTGTTCGAGCAGTTGGATACCACTAGCATTGAGCAGACCTATAGCCGGAAAGGCCAGCACGCCTATCACCCGAAGTTGATGGTTTCGATTCTGATCTATGCCTACAGCCGCGGCGTATTCAGTTCCCGGCAAATCGAGCGGCGCTGCCGCGAAGACTTGTCGTTCCTGTTCATCGCGCAAAATCACTGTCCGAACTTTCGGGTTTTGAGTGACTTTCGAAAAGACCATGCCGCGTTCTTTCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 5126853-5127060 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUTY02000001.1 Methylicorpusculum oleiharenae strain XLMV4 XLMV4_contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5126853 28 100.0 32 ............................ TTTCGCACCGACACCGACTACTTGCCCGACGC 5126913 28 100.0 32 ............................ TGAAATGGCGGTACTCAAAGAGCACGGACACC 5126973 28 100.0 32 ............................ ATGAACAACAAAAACAGCCGGAACAACCCTAA 5127033 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTCCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCAAACGCTGCTGTCAGTCCCAAAAAGGCGAAGCGCGGACGCTGAGCTCCGACGCCCAAGAGCCGTTGCGGCAACAGATGCGCGAAAAAATGCGGCAACCGGCTGCGAAGGCCGTTTACCGGCAACGCAAAGTCATTGTCGAACCGGTCTTCGGGCAGATCAAGAACAGCGGTTTCCGGGGCTTCAGTGTCAGAGGCAAAGACAAAGTCGCCGGCGAATTCTCGCTGGTCTGCGCCACGCACAACCTTAAAAAAATGGTCAAAGCGATGGGTACGGGATTAGTGCGCCCAAATTTTGGGAAATGGGCATTAAATCCCGCCACATAGGCAAAAACAGAAAGCATTAGCAAGACAAGAAGCTCGTTTATGCGCTAAAAGGTGCAAAATTCGGGAACAACATATGAATATTCGAATGCTCTAATGAATATTCAAAAAATAGGGCTTCTCGCTGTGCTATTCTCGGACAGGCTCCTAGGTAATCACGAAGAAGGGCACCCGAT # Right flank : ACACTGACTGGCGCTAACCTAACTTCGTCACCTAAAAACGCAATTTCCTGCTATTTCAATCAGTTAAAAATTTTATCCGCTGTCGGTTGGCACTACGGATTTTTTGCAGCTCACGCTGGTTTTACGTTTGCCTAGCGGATCGGCTTTGATGCCTAATGCGGCGTAGATTTCTTGTTGCTGAACTTCGGCGCGTGTCGTGGTGCGCAGATAGATGAGGGTCTGTTCGTCGGTGGGCAAAATGAGCGTGACCCGTTGTTGAGTGGCCATTAGGGTGCGAATGCGGTCCCAGCTCAAATGGATGCCCTTAAGCTTTAATTGATGGCGCAGGGTGTGCACCAAGTGATAGGCCAGTAGGGTAATGAAGAGGTGCCCGGTGACGCGGTCTTCTTTCTGGTGATACACGGGGCGCAAGCCCAGCTCGGTTTTCAGGCTTCTAAAGGTGGCTTCGATCTCGGTGAGCATGACGTAGGTGGTCCACAACTGTTCTTCCGACCAGTTCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 5129201-5129829 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUTY02000001.1 Methylicorpusculum oleiharenae strain XLMV4 XLMV4_contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5129201 28 100.0 32 ............................ TAGAACGATACCGTGCTTGGCACCCAACCCTG 5129261 28 100.0 32 ............................ AAATGCAAGGCAAACTCAGCACATTTGAGCAA 5129321 28 100.0 32 ............................ TGGCAGCCATAGGCGAACGCATCACCCGGATG 5129381 28 100.0 32 ............................ AACAAGCTAAGATCGGCTTTGACGCTTTAACC 5129441 28 100.0 32 ............................ GTTCTACGGCATTAACCTCTAATCAACTCTTT 5129501 28 100.0 32 ............................ TTCTGCGTGTCCGGCCTTACCATCCACACTAA 5129561 28 100.0 32 ............................ TTAAAGCACGATCTAACTTGATATCAATATTC 5129621 28 100.0 33 ............................ AAGGGCGTGGTGGCGTTGAGTTGGTGGCTGGGC 5129682 28 96.4 32 ........................A... GCGTAACGGGTCATGCCGTGGCGGCTGTGTTT 5129742 28 100.0 32 ............................ ATTCCGAACAAAAAGTTTGAAGCGACGTTGGA 5129802 28 85.7 0 ......................C..GGT | ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.4 32 GTCCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCTCAAGCGGCTGCGCCAGTTTATGTACGATTAAACGGCTGTATCGTTGGGCAGCGGTTTCCAGTAATACGCCGATCTCATCCGCCAGGGTAAACACTTCGACTTGCTGCGCTTGCGCGTCTTGTAGCAGTTGTTCAATTCGGGCCGTCAACAACGGCCAATGCTGAGGCTCAATCGCAAAGTCTTTGCCGAGATTCAGCAGGGTACGCTGTTTGACCTGCTGCCCTTCACGCACCGATTCAACCAGTCGGTAGGTAAAGTAGGCTTCGCCATCATCCAGGGTTTTTGTTTTGGTTTTTCGAATATACATGCCGATAGCGTGCGGCAACCGGTGCAGAAAATCAACATCATGCGCAAAAAATAATGGCACTACATTAGATTGACAAAATTGGCCATTGATTTTAAAGGACTTTTTTTCAAAAAATCGCCAGAAATCAAAATATCAATGACTTAGAGAGGTTTGAGTGACGAAGTTAGGCTAACGGTACGCAAGCCAAT # Right flank : TTTGGTGTCATTGGGATGAAGTTGGCTCATGGGCTGCAAATAATCCAGATACACCTAGACGTTGGTGGTTGAAACGACGTTATCTGCGTTCGTTTGAAATCGATGGCACTAACGAGTATGCCATTGGCGCGTTTGAGTGAGGACGAACAGGATGGGCAGGGCCAACCATGATGAGGTCTAAGCCGTTATCACAAAAACAACGGTTAAAGTATTTCGATAAACAACGTTTAGGCTGATTGTTGTTCAAAAAATAGTGAACGGCCTGCTCTGCAAGGCCGTTCTGTGGTTTTGGTTGGGTCTGCCGTACAGTCGGCCAGTCTCCTATCGCCACATACTTATCATATATAAGGGTAAAGATTATGCAATTTGATATCGAATTCGAATCCAGCCATTTGGATAGAATTTTAGAAGCGGCCAGGCGTGAGATTGCCTCGCCGGATGAAATGCTGGGCGGCATAGGGAATGAGTTATTGCGGGTTAATCGGCGGCGACATGCTCAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //