Array 1 153588-154680 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ALTP01000013.1 Streptococcus agalactiae GB00561 ctg7180000003882, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    153588	    36	 100.0	    30	....................................	CCACCTCTAGGTCCACGTAGAGTCTTATGT 	
    153654	    36	 100.0	    30	....................................	CCACCCCCTTTCTGTGGTATAATTGAAATA 	
    153720	    36	 100.0	    30	....................................	AACCCTCATAGCCTCATTTTTATTAGTCGT 	
    153786	    36	 100.0	    30	....................................	ATTTATTTTTTTATGCATAGCAATTTGACT 	
    153852	    36	 100.0	    30	....................................	CGCTCGATTGATGCTATCAACTATATTGAA 	
    153918	    36	 100.0	    30	....................................	TTCTTCAAGAGAACTTGTAGAACAGCTTCA 	
    153984	    36	 100.0	    30	....................................	AAGGTACTTTTAGCTTGTTCTTGTGGTGTT 	
    154050	    36	 100.0	    30	....................................	ACAGCTACTGTAAATTCTGCTTTTACGGTT 	
    154116	    36	 100.0	    30	....................................	TAGTGCAGTTGTCAAGGAGATTGTGAGCGA 	
    154182	    36	 100.0	    30	....................................	TTTAACCTTTGAAAATGTGAAAGGCTCGTA 	
    154248	    36	 100.0	    30	....................................	GCGATGATGGTAAGTCATCATGGACAGCGT 	
    154314	    36	 100.0	    30	....................................	TTTTACACACGATGTCAGATATAATGTCAA 	
    154380	    36	 100.0	    30	....................................	AGTACTGCACTAGGAATTGTAGAGATCAAA 	
    154446	    36	 100.0	    30	....................................	TTAAAAGATTTAAACTATCAAGCGTCAATT 	
    154512	    36	 100.0	    30	....................................	TTCTAAATGCTGGTGACTGCTTTGCATAAA 	
    154578	    36	 100.0	    31	....................................	TTGCTGCTAGACCCAAACAGTTTATTTTTAG	
    154645	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        17	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                               	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//