Array 1 51981-53962 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYM01000022.1 Salmonella enterica subsp. enterica serovar Weltevreden strain BCW_2820 NODE_22_length_58151_cov_3.88721, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51981 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 52042 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 52103 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 52164 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 52225 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 52286 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 52347 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 52408 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 52469 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 52530 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 52591 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 52652 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 52713 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 52774 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 52835 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 52896 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 52957 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 53018 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 53079 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 53140 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 53202 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 53263 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 53324 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 53385 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 53446 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 53508 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 53569 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 53630 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 53691 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 53752 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 53813 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 53874 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 53935 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17866-16982 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYM01000092.1 Salmonella enterica subsp. enterica serovar Weltevreden strain BCW_2820 NODE_92_length_17893_cov_3.66177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17865 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 17804 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 17743 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 17682 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 17621 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 17560 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 17499 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 17438 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 17377 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 17316 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 17255 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 17194 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 17133 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 17072 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 17011 29 93.1 0 A...........T................ | A [16984] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTTGCCCCCAGGAAACGATGATGACC # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1475-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYM01000167.1 Salmonella enterica subsp. enterica serovar Weltevreden strain BCW_2820 NODE_167_length_2509_cov_2.8507, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1474 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 1413 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 1352 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 1291 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 1230 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 1169 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 1108 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 1047 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 986 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 925 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 864 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 803 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 742 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 681 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 620 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 559 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 498 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 437 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 376 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 315 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 254 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 193 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 132 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTGGATAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //