Array 1 15673-16362 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV878782.1 Spirulina major PCC 6313 Contig47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 15673 35 100.0 42 ................................... CCGAAACCTTTACCAACAAATGGATCAGCGGTTCCACGCTGG 15750 35 100.0 34 ................................... AATCTACTGGGCAATTCGCTCAAAATAGTGGGGT 15819 35 100.0 36 ................................... TCTGGTGGTCTCCACTGGTTCAGCGGTCGAAAAAAT 15890 35 100.0 35 ................................... TCAAGGACTCGTTGCCGCGTTTTCACGTAATGACG 15960 35 100.0 39 ................................... AACTTGGAATGCGGTGGCCGTGTAGGCCATCTCCGTCCA 16034 35 100.0 35 ................................... ACGGGGAGGAAGAAGCGTGGACCAAGTTTTTTGGA 16104 35 100.0 38 ................................... TTCGGAGTATCCTTAGGTGACCCAAACCTGGTCGCCGT 16177 35 100.0 39 ................................... CCGTCTACCAAAAATTTATTTTTGGATGGGACCTGGACT 16251 35 100.0 42 ................................... CCCTGGCAACACCTGCCAGAGACAGTTATCTGGTATAAAATT 16328 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 10 35 100.0 38 GTTTCCAATCAATTAGTTTTCCTGTGAAGGAAAAG # Left flank : ACGACAGCACATCCCGCTCCTATTCTGTTCTCTTCAAACTCAATGATGCCCGCTTCCGCTATCGTCACATCACCTAATCTCGAACAGGGCGCGATCGCGAAACTCCGCACGCTCTCTAAAAATCCATGTTCTGTCGTGCGGGCATCTTGCCCGCTAGTCTCAGACAACATAGGGAGTCTCAGACAACATAGGGAGTCTCAGACAACATAGGGAGTCTCAGACAACATAGGGAGCAGGATGCTCCCACTCCATCAAAATCAATAGTCTTTCAACGTCTGCTCTGTACTGAGATGCAGAACATAACCGAATCATCCGCAGTACATACTGTTTTTTTCGTTCTTTCAAGGGAAGCAGTTTTGAAGGATGAGGGATGAAATTAGAAGGCAGTTTTAAAGGATGAAGGATGAGCTATGAAGGATGAAAAGAGAGTTTAAACAGTGAGGTTACACACTTATTCTCTAAATTCTGCCTTCATCCTTCTGCCTTCATCCTTCAAGAAC # Right flank : GGCTTGGGTTGTAGAACCCTCGCTGTGACTGGATTATAACACCCCATTTTCGTGGGATAGCAAAAAACACCCTAAAAGTGTGGGAATAATTCTCAATAAGCATCGGACTCAACGGCTGAAGCCTATATTTCATGCGGTCTCCGTGGGATAGAACGAGAGAATGCGGGTTTCAGCGATTTGCAACATCCCACGGCTTTTAGAGCATTTCGAGGCTATTGGTGCTAAATCCATTGAAACCTTGGTTTTTTGAACAGCTACAGCAAAATTGGGGCTTGATTGCTTGATTTTGTCGGATTTTCACGATCGCACCCCTTCCAGAATCCCCGAAACCATTGACTAGACTGGGTTTGCTGGATTTTGATCATCTTAACCCGATTTTGACTGAGAGATCGGGTCACCTTGGCCTCGTCTTGGCGTGGAATGGGGGGGACTCATTTCAGCCCGTAATTGTTGTTGAAACTGTCGAAGTTGGGGCACACTGTCCGACTGAACCTGTTGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATCAATTAGTTTTCCTGTGAAGGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 20893-21504 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV878782.1 Spirulina major PCC 6313 Contig47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 20893 35 100.0 37 ................................... TCCGTTCCGATGGGACGGACATCCCTAGACTTCAATC 20965 35 100.0 37 ................................... ACTCTACTCCCCGTCCTCCCCTTGGACTAGACTAACC 21037 35 100.0 39 ................................... TGTCAGGAACCAGCTAGGCTGGGACCTGATGACTGAGTC 21111 35 100.0 37 ................................... CATTTTGCTGATTTAAGTAAAGACCACCCAATTTCGC 21183 35 100.0 33 ................................... AACAATTCGTCGACGGCAGTCGGCGTTTTCCAA 21251 35 100.0 34 ................................... CTGATTCCCTCGTCGGAGGTGCTAGACAAAGTTT 21320 35 100.0 41 ................................... TTTGATTCTTATTGTTTCGCTGTTGACCTTAGGCGTGTCAA 21396 35 100.0 39 ................................... CCTACCGAAAAGAACAACTCACTACGGGGTACTACTACC 21470 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 9 35 100.0 37 GTTTCCAATCAATTAGTTTTCCTGTGAAGGAAAAG # Left flank : GGCTGAAGGGGGAAAGGAAGAGAGGCTGATTTGATGCAGGTGATGAAGATGGCGATTAGTTCGTTGGTTTCGGCTTTGAGGGGTTCAATTTTTGGGCTGGGAAAGAGTTCTGCTTCGATTAATAAATCGAGCCAATAGTCGGTTTCGTCAAGTTCCTGAATCGCGACTTGCATTTTGCTCTTAAATTCTGCGTTTGAACGGGCGCGGCTGGCTTCTCTGTAGTGTGCTCCGATGGATGTGCCACTGCGGAATACTTGTTTCCCAATGGTTTGGGCGACGGTGCTTTGAGGCAATGCGGAATACAACCGAATGATTCGCAACGCATACTGTTTTGTTCGTTCTTTAAGGGGAAGCACTTTTGAAGGATAAAGGATGAAGGATGAAGGCTGAAATTTGAAGGCAGAAATAAGATTTTGCGTTTCCACTATTCCTGATTTCTCCCTTCATCCTTCATCCTTCTGCCTGCTACGCACGGGCAAAGCCCTACATCCTTCAAGAAC # Right flank : GGCTTGGGGTGTAGACCCCTTGCTGTGACTGGATTATAACACCCCATTTTCGTGGGATAGCAAAAAACATCCTAAAAGTGTGGGAATAATTCTCAATAAGCATGATGCTCAACGGCTGAAGCCTATATTTCATGCGGTCTCCGTGGGATAGAACGAGAGAATGCGGGTTTCAGCGATTTGCAACATCCCACGGCTTTTAGAGCATTTTCGCGTAAACTCGTGTAAATGGTATTTTTCATGACTTCATCAACCCCCAAAGCGATATTTGCCTGAAAAACCCTCAAAACCCTCAAAATGATACAGCCACCGACAAGCGTCAATGGCTGTATCCCTTGCCTAGTCAAGGATTCAAGCGAACTTGTTCCAGGTTAGGTCATTTCCAATCAATTATTGTCCCCGTCGGGACTCCAAACAACCCAGGGTTTGACCTGAATCATTTGGACAATTCAACGGAACAGCAGCCGCATCAAACACCACTTCAAACAGTCCTTGGGGGACTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATCAATTAGTTTTCCTGTGAAGGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 42526-42186 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV878782.1 Spirulina major PCC 6313 Contig47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 42525 37 100.0 37 ..................................... TTAAGGACTCGAAAAACAATGATCAAATTCAATCTCG 42451 37 97.3 36 ..............................C...... AATTGTGATAGTCATGATTTTCTCCTTTTGTTAAAT 42378 37 100.0 41 ..................................... CGATTTGAGATTGGAGGCTTGCAGGGCGGGGGTCGATTTGA 42300 37 97.3 41 ....................................C CATGCGCGTATCCGCAACCTGTTCGACGGCACCAACGGGGG 42222 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 98.9 39 GTCTCCACTCGCTGGAGACCCTAATTGATTGGAAACT # Left flank : GTCTACCATCCCAGCCAGGGGTACAGTCCCTATCGCATCCGCTGATGTTGCTCTATGTGGTGACCTATGACATCCCCTCAAATCGGCGGCGGCGGCGGGTGGCGGCGTTGTTGGAGGGCTATGGGCGGCGGGTGCAGTGGTCGGTGTTTGAATGTGTGTTGCCGTCTCCTCTGTTCGCGGAGTTGAAGGGGCGGCTGAGGCGGCGGGTTAATCTGGAGGAGGATTCGATTCGGTTTTATGTGGTGTCGGGGCATACGTTGGGTCAGGTGGAGGTGTGGGGTGGGGTTCCGGTGGCGACGTTGCCGGGTTCGACGATTGTTTAGCGACGGGTTCTGAAAATGGCTGAATGGTTGATTTTTTCGTTAAAGGGTTCGATGTCTGATGGGGCAAGGGTTTCAGCCGTTTTTTTCGGACTTTTGGGGCGAGCGATCGCTCTTTTTTCGCGACCCGTCGATCTTGCCCCCTGGAACCTTGGCCCCCACTGCCCTTAAAATGGAGGG # Right flank : GTGTAAGAATTTCAGCGCCGCCAAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCAAGATGCCCGCACTACGTCTCCACTCGCTGGAGACCCTCATTGATTGGAAACGCTTTTGAAGGCAGAAGGATGAATGGGAAAAGAAGAAAGAGTTACTTTTTTCTCAATCTCAAAATTCTGCCTTCTAATTTCATCCTTCATCCTTTAAAACTTCCTTCATCCTTTGAAGCGATCGCTGGGGAGCTTGGCCGCGCTAAACAAGGGCGGTACATTGGAAGGATTGTCTTTTCAACCTCAGTTGTCCTATGGGTTCTCGTCCTGCGGTGTTTATCGAGAAACAGTTTCCGGTGAAGCTCTTGAATGAGCAGGTGTATTACGAGCATGGGGGGAACCCGTTTAAGGGGCTGCATCGGTGGTATTCGCGGAAG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTCGCTGGAGACCCTAATTGATTGGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 909930-909301 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV878783.1 Spirulina major PCC 6313 Contig40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 909929 37 100.0 39 ..................................... GTCTCTACCAATTCCAAAGGGAATCGGAAGCAATTCAAT 909853 37 100.0 38 ..................................... GTGCATGCTGGAAAGTTGGCACAATACCACCGATTGGG 909778 37 100.0 35 ..................................... CCCCAGCGCATTAGCAAAATCTTGAATATCATTCA 909706 37 100.0 39 ..................................... CAGTACGGCGACGGCCCTCCTGTGCGAATTGTGTTTGAG 909630 37 100.0 38 ..................................... CCGCGTAGCGGGACGGGCGGGCTTGACAATAGGTGGCT 909555 37 100.0 34 ..................................... AGGATTGCGCTTACTGGCTGTCCCCGTCTGAGGA 909484 37 100.0 38 ..................................... CCTGGATCGATGCCAACCAAAACCCCGAAGACATCCAG 909409 37 100.0 35 ..................................... AGGAAATGACAAACTGGACTGATGAAATAGACGAA 909337 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 9 37 100.0 37 CCCGCCAACCCAAAATCCCCGCCAAGGGGACTGAAAC # Left flank : CCAAAATCCCCGCCAAGGGGACTGAAACCGCTTTCTATCTGAATATGAGGATTTAAAAAATGAAACCCGCCAACCCAAAATCCCCGCCAAGGGGACTGAAACACCTATCTCCTAAAACCAACTTACTTAACCAATGCGGTTCCCGCCAACCCAAAATCCCCGCCAAGGGGACTGAAACAAAAATTTCACCACGGTGATGATCACCCCCATGGGGACCCGCCAACCCAAAATCCCCGCCAAGGGGACTGAAACTACAGAGTAATTCTACTCATTAAAACTCGATGTTCACTCACCCGCCAACCCAAAATCCCCGCCAAGGGGACTGAAACACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCCAAAATCCCCGCCAAGGGGACTGAAACAAACCATTTTTCAAATTGGACAGTTTCTACACTATC # Right flank : ACAAAACTACTATTACTGAGCTTCAGGATGGCACCGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCAGTGCTAAAGCTTTGCTGGTTCATAACGACCAAGTGCAGGGCGTGGAAACGGAGGACGTGAGTGCTGATGAGATGTGGTCATTCGTGAAAAAAAAACAAACAATGCTTGCCCGAAGAAGTTGAAGTAGGCGATTGCTGGATTGCGATGAGTTTGGCAGATTCGAGCGGGTTAATCTTGGCAGCACGAGTGGGGAAACACACCGATGAACTGATTGAAGAACTGGTGGTGAGCACGGAGGGAAAGACCCATTGCCAGCAATGGAATAGTGACAACTGGGGAGGATATGAGCGGGTACTGCCGCTGGAAATTGAGCACTACATTGGCAAAGACCAAACGCAACGGTTGGAGCGTACCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCCAACCCAAAATCCCCGCCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.00,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 911747-910101 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV878783.1 Spirulina major PCC 6313 Contig40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 911746 37 100.0 35 ..................................... CAATGGTAAGAAGCCTTAAATTTGCAGCCCTTAAG 911674 37 100.0 38 ..................................... ATTCTGGCCTTAAGCTCTATGCCTCTAATCCTTTTGAA 911599 37 100.0 33 ..................................... CTCTTCCCTGGTGGCAATCATTTATGGATCGTG 911529 37 100.0 36 ..................................... ATTTGGGTTTAGTTCGTTGCATTCCTTCTGATCAAC 911456 37 100.0 35 ..................................... TTCAAGATATACTTCAACCGAGCCCTGGAAATCGG 911384 37 100.0 40 ..................................... CCCATAGCGCTGTCATAGACCACACCCAGTCCGAAGCCGA 911307 37 100.0 34 ..................................... TCTTCACTCAACTCTACCGGGTCATCGTCACCAT 911236 37 100.0 36 ..................................... TTTCTGGGGGGCTTTAAATAATGTTTTCTTCTCCTT 911163 37 100.0 34 ..................................... TTTCAAGCTTTTGCAATTCACGATGGATCTTTAA 911092 37 100.0 36 ..................................... GCGATTTCGCTTACTGAGCCGTTGAAGGTGATGCCC 911019 37 100.0 34 ..................................... CTGATCAAAATTTTAAAAGCTGAAGCCCCAGCAA 910948 37 100.0 35 ..................................... TGCAATTTCACCGATTCTGGATTACGGAATGGGGG 910876 37 100.0 38 ..................................... CGATGATGACCACCGCCCCGGTTACTCCCCCCCCCAGA 910801 37 100.0 37 ..................................... CATTTGTTTTCCTTTTGTCTATTCTGCCCAGTGCCGC 910727 37 100.0 31 ..................................... CGGTTTGCGGCTGCTGCTGTGGGTTTTCCGT 910659 37 100.0 34 ..................................... TTTCGTTGCCGGGTTCATTTGCTTCTGGCTCATT 910588 37 100.0 38 ..................................... TCTGCAGTCAATCGCGCGGGCGCGGGTGTATCCCGACA 910513 37 100.0 38 ..................................... TTTTTTTGAGTTGCTCCGTTGCCTTACCGGGCGCGGAG 910438 37 100.0 37 ..................................... CGCTTTCTATCTGAATATGAGGATTTAAAAAATGAAA 910364 37 100.0 39 ..................................... ACCTATCTCCTAAAACCAACTTACTTAACCAATGCGGTT 910288 37 100.0 37 ..................................... AAAAATTTCACCACGGTGATGATCACCCCCATGGGGA 910214 37 100.0 40 ..................................... TACAGAGTAATTCTACTCATTAAAACTCGATGTTCACTCA 910137 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 23 37 100.0 36 CCCGCCAACCCAAAATCCCCGCCAAGGGGACTGAAAC # Left flank : GCGAACAAGCGACGCACCCGCCTACACGCGCTCCTATCGGGCTACGGCCAGTGGACACAATTTAGTGTGTTTGAATGTTTTCTCGCGGCGAAGCAGTTTGTCGCGCTTCAGCACCGCATCGAGAAGTTAATTAAGCCGCAGGAGGATTCTGTGCGTATCTATGTCTTGGATGCGGGGTCTGTGCAGCGGACGATTACCTATGGTTCGGAGGTTCCGCGTCAGGAGGATGTGATCATCATTTAACGTCGTGGTTTTATTCGGAGGGTTTATGATATCCTCGTTGCATCGACTATTTTTTGCGCCAACCTAAAGCGGGGTCGAAATCCCTAGGGGGTTCGCGCAAAACGCCCAGAACCTTGACAATTCAATAGTTTCAATTTTCAACGTTTGTGATTTTGCTCAGTTTCAGTGTGAAATCACGCTTTCAATTCGGGTCAAAAAATGAGGTTCGCGCGAACAGCAATCTCGACCCAGGCCCAGAGCGGCTTCTAGCCGCCGGT # Right flank : ACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCCAAAATCCCCGCCAAGGGGACTGAAACAAACCATTTTTCAAATTGGACAGTTTCTACACTATCCCCGCCAACCCAAAATCCCCGCCAAGGGGACTGAAACGTCTCTACCAATTCCAAAGGGAATCGGAAGCAATTCAATCCCGCCAACCCAAAATCCCCGCCAAGGGGACTGAAACGTGCATGCTGGAAAGTTGGCACAATACCACCGATTGGGCCCGCCAACCCAAAATCCCCGCCAAGGGGACTGAAACCCCCAGCGCATTAGCAAAATCTTGAATATCATTCACCCGCCAACCCAAAATCCCCGCCAAGGGGACTGAAACCAGTACGGCGACGGCCCTCCTGTGCGAATTGTGTTTGAGCCCGCCAACCCAAAATCCCCGCCAAGGGGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCCAACCCAAAATCCCCGCCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.00,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 3 936327-939449 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV878783.1 Spirulina major PCC 6313 Contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 936327 37 100.0 35 ..................................... ATGCGATTAGTGAGGGTTTAGACGGGCAAAACCAA 936399 37 100.0 36 ..................................... CAGTTTTGCCGGTTCCCATTGGGGCATCTAACACGA 936472 37 100.0 38 ..................................... CAGGGCGGGGCGGTTCCGCCGGGGTCGTTTGCCTGCGA 936547 37 100.0 35 ..................................... CATTGATGAAGTAGCCCGTCGGTTTAAGATTCTGG 936619 37 100.0 36 ..................................... CAATGATGGTGACTCGAATCCCATCTTTATCTTCAA 936692 37 100.0 35 ..................................... TTACCTCATAGGGACAGTCTGCATTATGGTTAAGA 936764 37 100.0 36 ..................................... GTTTTTTGGCTAATGAGATTGAATCGTTCACTCAGG 936837 37 100.0 34 ..................................... ATCAAAGGTCGGGAAAGCGAAGGTCCTCAGTTTA 936908 37 100.0 37 ..................................... AAAGCAATCAAGCGTGAATCGCAAGGTAAACGCGATA 936982 37 100.0 36 ..................................... CACCCCATCGCTTAGTTGCACTGTTGCATAGGGAGT 937055 37 100.0 36 ..................................... ACAACAGCACATCACGCAAGCCCTGAACTCAGCCCC 937128 37 100.0 38 ..................................... GCTTGATGAAGGATGTGAACCCGACGAAGCCGCCGATG 937203 37 100.0 39 ..................................... ACTTTTTGGCGGCTTTCGAGGCATAGGATGAGGCAACCA 937279 37 100.0 39 ..................................... TACTTGTCGGGAGAATCTGAGGAGACCTTTCACCCCCAC 937355 37 100.0 37 ..................................... TACCGCTCCTAATTCCCTGTGCATCAACTCCGTTAGG 937429 37 100.0 35 ..................................... CATTCTTCAATCAATTGCTTTAGGTTCGTTTTGAA 937501 37 100.0 39 ..................................... TCCGTTCCTCTAAATCCTTTTTCATCTCGTAGGTACTGT 937577 37 100.0 38 ..................................... TCCAGACTCGGATGTACTCCGCCACTTTCCTCGCGCAA 937652 37 100.0 40 ..................................... TTGTTCCACTCGTCAAGCACGAGCAAAATTCGGTGGGGTA 937729 37 100.0 37 ..................................... GTCCCATGGATTTAGCCAAATCAAACGCGGTTTCTTT 937803 37 100.0 35 ..................................... GCTTAAGGAGAGTTGGAGTATGTTTACTAACTCAA 937875 37 100.0 36 ..................................... GTCGCTACGGCTGTCGTCCCGATAAAGATATCGACC 937948 37 100.0 36 ..................................... ACAGGAGAAAGCCAACGGCTTCCGGCTGGAAAGCAA 938021 37 100.0 36 ..................................... AAAATCAAGAATAAGAAATTGAACATGGATATTAAT 938094 37 100.0 36 ..................................... CACCGGCCCGGCGATCATCCCCACGGCAGGAGATTA 938167 37 100.0 35 ..................................... CATACCCCCTGTCCCTTTTGCTAGTCTTTCAATGT 938239 37 100.0 37 ..................................... CATTAAATGCGGTGATTGTGATTTGGCAGTCAATACC 938313 37 100.0 38 ..................................... GCCGCTGATCCAAGCGGAGACACGCCCCCCGATATTGA 938388 37 100.0 36 ..................................... CGTTATCGTCCGCAATTTGGGAGAGGTAGAAGAGGT 938461 37 100.0 36 ..................................... GTCTTGGGGGGCTGGGCCATCCTGAAGATGATCCGA 938534 37 100.0 35 ..................................... CCACGGGACGGAAGTTAAGGCCATGGGTCTAGAGG 938606 37 100.0 38 ..................................... TTTTGGGTTAGCGTCATTCGGCGTTAGCCTTTTTTTGA 938681 37 100.0 35 ..................................... GTCATTGAGATTTATTCTGCAATAGGAATCGGGGG 938753 37 100.0 36 ..................................... TTATCGATGAAGTTAGCGATCGCACTTTCCACCGTC 938826 37 100.0 36 ..................................... ACGTCTTTTGGAACGAGATGATCGGGATTGGTCACC 938899 37 100.0 37 ..................................... GACAAAGACCGCCCGCAAAGACCGGGAAATCAAGCCG 938973 37 100.0 35 ..................................... CTTCGCTGAGATTCAAGACAGCTAGTGGGGTGAGT 939045 37 100.0 37 ..................................... TTGAACTGACTCAAACTCCATTGGAAGGTGTGCGATG 939119 37 100.0 38 ..................................... ATCAAACTGCGCCGCCCAGATTAGATCGGTACCATCCT 939194 37 100.0 34 ..................................... TCATAATTTTTCTTAGACTCTTTCAAATAGTTTG 939265 37 100.0 38 ..................................... ATAATTATGATCATTGACGGTCGGATAGGCTACGCTCG 939340 37 100.0 35 ..................................... ATCATGACGGTCGTAAAATTCTTGACCACGCCCAA 939412 37 100.0 0 ..................................... | T [939414] ========== ====== ====== ====== ===================================== ======================================== ================== 43 37 100.0 36 CCCGCCAACCCAAAATCCCCGCCAAGGGGACTGAAAC # Left flank : GTCGTCGTTACAACTCCACCCCAGGGCACAGGCTGCGATCGCGCGTAGTTGGCAGATTCAAGAACCATTTCTCCCGGTGTGGTTGCGGGGTGCTGCCCCCCAATTGGCCGCAGTGTATCCCCGGCAGCCGTTGCCGTTGGCTCAATTCCCGTTGGCGCGATCGGAGTTTCGTCTCCTGTACGCTTTGGTGGTGCGGGGGTTACGGCTTGCGGATTCGCGATCGGTTCAGCTTTTTTAATTCAATTGCTCTGGACAGGTGGGGGGTGGTCTTCTATGATGGGTGCATCACCAGTTTTTTGCGCCAACCTAAAGCGGGGTCGAAAACCCTAGGGGGTTCGTGCAAAACGCCCAGAACCTTGACAATTCAATAGTTTCAATTTTCAACGTTTGTGATTTTGCTCAGTTTCAGTGTGAAATCACGTTCTCAAATCGGGTCAAAAAATGAGGTTCGCGCAAACAGCGATCTCGACCCAGGCCCAGAGCGGCTTCTAGCCGCCGGA # Right flank : CTTGGAATATGGCGATCGCCCCACAGCGAAAAACGCATCCTGCGGGGTGGCTCGTGGTTCTTCATGTCCCCGGTCATCTGATATCACCAGATTGAGTTAACGATTTGTCGTGTTGCGGGCGCTGACCCATTGAATATTTTCCTCAAGGTCTGTGGCGGCCTGCATCTCACCCAAGGCCCGGTAGACGGTTTGGGCCTGTTGCCAGGAGACGATCGCGCCCTCGTCATCCTGTTTCACGACCGCCAGATGCCCCAATTGCGCCAACGCCACCGCCCTGGCCAGAGTAGGCGCGGCCTCGGTGGATTCTAATGCTGCTCGGTAGTAGGTTTCGCTGGGTTCGACAAGTAATAACCACCCAAAGTAGAGATTGCCTAAACGCACCGCTAATTCTGGGCTGGGGTCGTGTTGCCAAAGGTCTTCGAGGAGGGCGATACCGGCGGTGATGAATCCCTGCTCAATGTAGAGATCGGCTTGTTGCTGTTGTCGGGTTCGGGGATCGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGCCAACCCAAAATCCCCGCCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 967820-968074 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV878783.1 Spirulina major PCC 6313 Contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 967820 37 100.0 34 ..................................... AGGCACTCCTTTTCCGGGAACACTCCCTTCCTGA 967891 37 100.0 36 ..................................... ATTTCCATACTGATACCCTCTCTCCACCGAAATATC 967964 37 100.0 37 ..................................... AGACAGCATCTTGCGTGTTCACGATATCTTCTGGAGA 968038 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 36 GTTTCAATGACCATCCCACGTTGGGATGGATTGAAAG # Left flank : CGTACCTTGACAATAGAATAGAGATAATCGCGCCGTAGGTCATGTTCTTTCAGAACCGCTGAACTACGAAAAATATGGGCTAGTTTGCTTGTTTGACAGCAAGTGTGCTTTCTGGCCCTGGTAGCTGTCCGCCCTGATGCTGATTTCTGCACACCTTAATAGCAGAAATGATTAACTTGAGAAATGAAACGCTTGTGCCTTCATTTTACGAGGTCGGTGCGCTCCCAGCAATAAGAGTGTGGGTTTACCACAGTGATGGCTACCGAATCACCCCCGACCAAGGGGGAATCCACCCCAATCTTCTCATTTCTGGCGTATACGAAGCGGGGTCAAAATCCCCAAGAGGTTCGCCAAAATGGGAAACCCCTTTCTCAATCTGCTTTCTAGGCTTTTGATCTGGTCTTTCAGGGCAGTTAACCCAAAGCCAACAGCGACGTTTCCGGCAGATCTGCCAAAACTGAGGTGGGAAAGCAGTCTGGATAAGGCTTCACCAGGGAGCG # Right flank : GAGGTTTGCCTCGGAGATGTTTGCCCTAGTGAGATTGGTTGCTGAAACCATCCCAAGGTGGGATTAGGTTGAAAGAGTAATACAAGAATTGGGTGGATTGAAAGCAAGTCCCACCGTCCCCTACTTTAGTGCAATGCAAGATTACACAACAAACTTGCTCTGAATGTATGGAAGGTTCGTAAAAGTGGTGACAAATAATTTGTCAAGATGACATCAATTTGACAACGATGACAAATAATTAGTCAATCGACATGTGGGCAACACCGTCAGAACAACTCAGAAAACTCTGAAACGATGGGGGTGGTGGGACTTGAACCCACACGTCTTTTTACGGACAACGGATTTTAAGTCCGCAGCGTCTACCATTCCGCCACACCCCCAAGAGCAGTGACAGGGTTCTAGTTTAGCAGCAAATGGCGGCCACTGCATGGAACAGAACCCTCAGAAAATCTAATCAATCTGCCTCTTGCGCTCCGATGGGTTGAATTGTTTATGATGGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATGACCATCCCACGTTGGGATGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.80,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //