Array 1 182513-179863 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKNW010000004.1 Klebsiella pneumoniae strain 2020EL-00060 NODE_4_length_383987_cov_29.999286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182512 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 182451 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 182390 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 182329 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 182267 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 182206 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 182145 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 182084 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 182023 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 181962 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 181901 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 181840 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181779 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 181718 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181657 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181596 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181535 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 181474 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181413 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 181352 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181291 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 181230 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 181169 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 181108 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 181047 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 180986 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 180925 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 180864 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 180803 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 180742 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 180681 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 180620 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 180559 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 180498 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 180437 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 180376 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 180315 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 180254 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 180193 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 180132 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 180071 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 180010 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 179949 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 179891 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32911-31968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKNW010000033.1 Klebsiella pneumoniae strain 2020EL-00060 NODE_33_length_39781_cov_18.366798, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32910 29 93.1 32 ............TG............... CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 32849 29 93.1 32 ............TG............... CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 32788 29 93.1 32 ............AG............... AGCAACGTTTCCGGATTATATGGCTGGAACGT 32727 29 93.1 32 ............TG............... TGGTGTTGTCCACGGTCACCCGCTGGCTGGAA 32666 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 32605 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 32544 29 96.6 32 ............................C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 32483 29 93.1 32 ............TG............... TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 32422 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT C [32411] 32360 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 32299 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 32238 28 89.7 32 ..........-.TC............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 32178 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 32117 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 32056 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 31995 28 89.7 0 T......................-....A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.3 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTGGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGCTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATCC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //