Array 1 255529-253608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBJS010000002.1 Salmonella enterica strain SC-Z1910-0003 NODE_2_length_785588_cov_145.839417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 255528 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 255467 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 255406 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 255345 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 255284 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 255223 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 255162 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 255101 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 255040 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 254979 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 254918 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 254857 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 254796 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 254735 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 254674 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 254613 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 254552 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 254491 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 254430 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 254369 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 254308 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 254247 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 254186 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 254125 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 254064 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 254003 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 253942 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 253881 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 253820 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 253759 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 253698 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 253637 29 93.1 0 A...........T................ | A [253610] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 274975-272140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIBJS010000002.1 Salmonella enterica strain SC-Z1910-0003 NODE_2_length_785588_cov_145.839417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 274974 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 274913 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 274852 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 274791 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 274730 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 274669 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 274608 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 274547 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 274486 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 274425 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 274364 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 274303 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 274242 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 274181 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 274120 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 274059 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 273998 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 273937 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 273876 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 273815 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 273754 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 273693 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 273632 29 100.0 32 ............................. GCACCGGCACTGCGGTCAGCACCGCCAATATG 273571 29 100.0 32 ............................. GCAGTCCACGACTACAGCCCCGGGCAGCGGTT 273510 29 100.0 32 ............................. GGGGGCCTGGTCGGGAACGTAGATATCCCGAA 273449 29 100.0 32 ............................. TGAAATTGTCGTGCCAGCGCCACCTTGATGAT 273388 29 100.0 32 ............................. CTACGCACGCTGATTAAGGTCACGTGCGGTTA 273327 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 273266 29 100.0 32 ............................. ACGATAGAGATCTGGCAAAAGGCTGTTATTGC 273205 29 100.0 32 ............................. GGACTGATAAATAATTCATACGTTGAAACGGG 273144 29 100.0 33 ............................. ATAGCGTATCGTGGAAATCTGTAGCAGACGAGC 273082 29 100.0 32 ............................. AAATTTTCAGCATCGCCATCTGTAGGCTGCCA 273021 29 100.0 32 ............................. AGTGAGGAATAGCGCGGGCTGGGGATGGTATT 272960 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 272899 29 100.0 32 ............................. AGGGCGTCAGCCTCGGACGAATCGATAACAAT 272838 29 100.0 32 ............................. GCAGGCGTTCAGGCGCTAATTAGCTCTACCGA 272777 29 100.0 32 ............................. AAATGATTAAGGTGCTAAAAGCGCTTAATAGT 272716 29 100.0 32 ............................. TGGTTAATCGCGGCGCCACGATATCAACAGGA 272655 29 100.0 32 ............................. ACTCGCGAATAATCGGAAACCAGCCACCATCC 272594 29 100.0 32 ............................. GGCGCGCAGATTCTCGGCGGCTGGGAAAACAC 272533 29 100.0 32 ............................. GAAAAGGCAGCTCCAGTCTGGCACCTGCATGA 272472 29 100.0 32 ............................. GATGAAAGAAGCGTTAAACGCCTGCTGGACCC 272411 29 100.0 32 ............................. TTTTTCGGCTGTATCCAGCGTTATCCCTTGTT 272350 29 100.0 32 ............................. GTAGTGACTTCCGGCGACACAGATCCTGTTAA 272289 29 100.0 32 ............................. ACCAACCCCCGATACCCGCGAAGAAGTGGCAC 272228 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 272167 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================= ================== 47 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //