Array 1 694576-695935 **** Predicted by CRISPRDetect 2.4 *** >NC_013385.1 Ammonifex degensii KC4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 694576 30 100.0 37 .............................. GGAGGAAGCGACTGTTTTAGAAGACAAGCCCAAGCGT 694643 30 100.0 36 .............................. CGTATAGTGTGTTCAAGAAAGGTGGGTTTAAACACT 694709 30 100.0 37 .............................. TTAAGAAAAAGACCCCTCAAAGGTCCTTGCGTACAAA 694776 30 100.0 36 .............................. GCCAATCGTAGCGTGCCGGTTGACGTGCGTAACTGG 694842 30 100.0 36 .............................. CGGCCTCCGGCGCTTTGGCCGCAGTCTCTCCTACAT 694908 30 100.0 36 .............................. CCGGACCTCGGTGCGGTACCAGGAGAAGTCCATATC 694974 30 100.0 36 .............................. AAAAGCTGCGGGAACTGCTTGGGGTGGGCGCCGATG 695040 30 100.0 36 .............................. AGTCCTGGGCTACCTGGGTCACGACTTTGGGGTTGT 695106 30 100.0 40 .............................. GCTAAGGCGCTGGACAAAGTGAAGGAGATATCGCCGGAAG 695176 30 100.0 37 .............................. TCCACACCCAGCGGCGCGTCCAGGCTCAGGACCTGAA 695243 30 100.0 36 .............................. AACCCATCGCCCCCGCAGGCGAGACGGCGCGCGGGT 695309 30 100.0 37 .............................. ACCGGAGCGAACAGGCGCTCGCTCCCGGCCAGCGTCA 695376 30 100.0 37 .............................. ACAAGATTTGCGCGGTTGTGATATTTTGTAGAGGAGG 695443 30 100.0 36 .............................. GGTACAACCCAGCCTATTTGGCGCAGGTCGAGACCG 695509 30 100.0 36 .............................. ACGGGCAACAAGTGGCCACAGTAGTCCTCCTCCCTC 695575 30 100.0 36 .............................. ATGAAAGTCTGCTCCGGACCCGACGGGACCTGGAAG 695641 30 100.0 35 .............................. TGAACAGGAAAAGGCCACTCTGCGGGGCGGGGGAA 695706 30 100.0 37 .............................. GGTAGCCGGGTACCTCCGCTGGCGGAGGTGGATGGGC 695773 30 100.0 37 .............................. AGCTATGCAGGAAGGATGCTACTAGAGGGGCGGAAGG 695840 30 96.7 36 .............................T AGTTCTCTGCCCGGATAAGGGCTTCTGCCACCGAGA 695906 30 76.7 0 ......G.........G..T....CCT.C. | ========== ====== ====== ====== ============================== ======================================== ================== 21 30 98.7 37 GTTTGTAGCCTACCTATGAGGGATTGAAAC # Left flank : TGGTCTACGATGTTAATGTAGCGCGGGTGGCCAAGGTCTTAAAGATAGCCCGCAAGTATCTGCACTGGGTGCAGAATTCTGTCCTCGAAGGGGAACTGACCGAAGCTACCTTCCGAAAGCTTAAGCATGAGCTCGGGCAGGTAATCGATGTGAAAGAAGACTCGGTACTCTTCTACGTTTTGGGAAACCAGCGCTATACTACTCGTGAACTCCTGGGGGTAAAGAAGGGTGGAGAAGAATGGATCTGGTAAACCTCTTTCCACCCTTGAAAGGAGTTGGGCTTTCCTAGTGACTCCTCGTAAAGAGGAGTGTCGTCGACCGTCGGTAGTGCAAAAACCCCTGGAGATCGACGACACTACTTAAATCTTTTAAATATTGACTTGAAAGCCCGCAGTGTGGTAGTATTGAGCCAACGAATAACCTGGCGAGCTTCCGGCGAATGGTCGCTCGCAGGGCCAGTGACCGGTCTCAGAAAGTCAGAATTTACGCCCGCAAAACGG # Right flank : CCTCTCTGTTCTCTCCTGCTTAAAAAGCTCTGTTAGCCACTGGGTAGCTTCTCCATTGTTCTCCCCGGTACGATCAGGCTCGCCAAAGTTACTTTTTGCGGCTATGCTCCCCAGCATATTGAAGGGGAAGAAATAAGGTTAAGGGATCTGGAGCAGGACTAGAGGTTAAAGGAGTAGAAGTCTTAATTGCCCTCGGTTGCGGCTGGAGAAGAGGGGAGGTTTTTCGGTTTGCTGCGGCTGGGATGGGTTGATTATCTTAACTGCCTACCCATATATTACCCGTTGGAGCGCGGGGAAATTAAGCCCCCCTTTATGCTGGAGCTGGTTAAAGGAGTGCCCACAGAACTCAACCGTCTTTATCTGGCAGGCGAGCTTCAGGCCACACCCCTTTCTTCCATAGAGTACGCTCGACATCCGGAAGTTTCGTACATCTTGCCGGGCCCGGTAATAGCGGCGGATGGGCGGGTGGGCAGCATCCTCCTTTTCAGCCGCCTTCCCGT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 818981-820731 **** Predicted by CRISPRDetect 2.4 *** >NC_013385.1 Ammonifex degensii KC4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 818981 30 100.0 35 .............................. ATGGAAGAGCCACCGCTTCCGGGACGTGCTGGGGA 819046 30 100.0 36 .............................. CTATCCACGGCCAGACGAAAAAGACCGTGGGAATTC 819112 30 100.0 36 .............................. CCAGAACCAGAAACCCGGATAACAGCGCTGTCCTTA 819178 30 100.0 38 .............................. CCCCCCAGGGGCAGGTCTTCGAAGTGAAGGTCGGCGAA 819246 30 100.0 36 .............................. AGATATAACAGCTACTTTAGGCAGAAAACAAAGGAA 819312 30 100.0 36 .............................. GCCGCAGCGCTACCGAGTTCCTTCTTAACAAGCTCC 819378 30 100.0 36 .............................. CTTCCCAGCGCGCTGGTAAAGCTTCCCATATTGAAC 819444 30 100.0 36 .............................. AAACCTTGGGCAAGGCGAGGTTACTCGTCCCCCTCA 819510 30 100.0 36 .............................. TGGCGGAAGGCGTGGCCCGCGCCCACTTCTGCCGCA 819576 30 100.0 36 .............................. TGCAGGAGCTCTATCTCCCGTGGTGGCCCGCTGGCG 819642 30 100.0 36 .............................. CAGGCGGCGCACTTCACTACCCAGTTAGCGTAGCAG 819708 30 100.0 37 .............................. GCTTATTAGGATGGTGAGATAGGACGAGGAGGTGATG 819775 30 100.0 37 .............................. CCTGGGAGAGGAGGCGGCGATCATAACGAGGGATCTG 819842 30 100.0 36 .............................. GTTCTTCTAGGCCACCTACGCTTTCCATGTTGGCGT 819908 30 100.0 38 .............................. GGCCAGACCTGGCAGCGGTTCATCTCCTCCGCCACCGC 819976 30 100.0 36 .............................. CATACCCACCGCCTAACTGGTACACACTTGACCAGC 820042 30 100.0 37 .............................. AACCACCCACACGCTCCCAGATCCCGCATGTACGGCT 820109 30 100.0 35 .............................. CTTCAAACTGGCGACAACGGGGGCGGGGATGTACC 820174 30 100.0 36 .............................. CACCGGACGCCCCGCTCCCGAAAGTCCGGGCAGGTG 820240 30 100.0 36 .............................. TACGCTAGCGGCACGCCTTAAGCACCTCCAGGTCTC 820306 30 100.0 35 .............................. AGGATCTCGCGGACGAGCATGCTATCGGCCTCCTT 820371 30 100.0 36 .............................. CCTGCACGGGCGTCAACCCACAGAGTACTTCTCCTA 820437 30 100.0 37 .............................. AGGTCGAGACCCCGGCGGAGACCGAACTGCGCCGTGC 820504 30 100.0 36 .............................. CCGTAGACTTCTACGGCGTCATGTCCGCCCAAATTG 820570 30 100.0 36 .............................. CTTTCCTTTTGTGCCGGGAAGTGCGGGGCTGTCAAG 820636 30 100.0 36 .............................. AGGTAATTCTTGTTCAGCCAGTGATAAGGCGAATCC 820702 30 93.3 0 ...............C...........G.. | ========== ====== ====== ====== ============================== ====================================== ================== 27 30 99.8 36 GTTTGTAGCCTACCTATGAGGGCTTGAAAC # Left flank : CGGAAAACGGGCTTTGAGGGAAACCGGCGGGTCTCCGGCAGGCGCGTAGAGGTGCTGGGCGAAGGGGAAAACCGTCCCTTATTCCTCCCCGGGAGCCGCCTGTCCCCGGCCGGATCCTTGACGGTCGATATCACTCCGGAGGGCCTGTGGCGGTTCTCCGCCGGCGGTTCCGGTGCGCCGGGGTCGTGACGGCGGCGGCCCGCGTGGCGAGTCCTCGCGCGGTGAGGGGCGGCTTAAGCTTTCCCGCGAGTACCCGAACCACTCGCCGGCCGGGCCGGCCACCTGAGTGAGGTCTGGGCTGCCAGCGGTGTCGTCGATCTCCGGTAGTGCAAAAAACCCCGGAGGTCGACGACACACTTAACTAATTTAAGTGTTGACAGGGAGCCGTTGGCCGTGTTAGTATTTGACCAGCCGGTGGGTGCAGGGGGTTGCCGGCAAGCGGTCGCGAGGGGGGCGGAGTGGCCGGTTTCGAGGAGCCGGGAATGGCGCGGATAAAACGG # Right flank : CCTGTTACAACCTTCTCGCGCTCCCCCACTTTTCTAAAGGTGGAGGTCACCGCCCGGCGTCCCCGGTTCCGGCGGGGGAAGGGAGATGTGGTGCAGGGCGGACGCCGCCGAGGAGAGCCGCAGCAGCGCTTCCCGCATTTCCGCCGCGGCGACCTCCCTCACCAGGAGGGAGCGGACTTCCTCCAGCGCCCGGTCCGCCCGCTCCGCCAGCTCTTCCAGGAGGGCGGAGACGTAGAGGGGGTCGTCGAGGGCGGCTTCCCTCTCCGCCGCCCCCGCGAAGAGCCGCGCCAGGGAGGGCGGGCCAACTGCTCCTACCTTCAGCAGGAAGGCCAGGTCCACGACGTCTTTCGGCTCGCCCCGGCTCACCACCGCGCAGAGTTTGTTGACCGCGATGTTGAACGGGGTGTCGAGCTTCACCGTCAGCCCGGACTCGACCTCGAGGGAGGCGAACTCCTCCGGGAGGGAGAGGGCGTCCCAGACGAAGTCGACCCTGACGCCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGGCTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 925686-929635 **** Predicted by CRISPRDetect 2.4 *** >NC_013385.1 Ammonifex degensii KC4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================================================================================================== ================== 925686 30 100.0 36 .............................. AGCAGCCGCTGGCCTTCCGGGACGGCGAAGAGCATC 925752 30 100.0 36 .............................. CGGAGCGGGAACTCCGGGCGGTCCGGGAGTGCTGGG 925818 30 100.0 36 .............................. ATAGCCTACCTGCCCACACTACCCTATATCACCACT 925884 30 100.0 36 .............................. ACATACGAAGCGTCGTACGCTCCCGCCACGACGAAA 925950 30 100.0 36 .............................. AAGGCTCGCTGAAAATTAAGAACAGCAATACCACCG 926016 30 100.0 36 .............................. TCCCTATTGACGAACTCAGCTTTCCTTCCACAACAG 926082 30 100.0 37 .............................. ACGATGAACATTGGGTTGTTCGCAAGATACATGTTTA 926149 30 100.0 37 .............................. CTCCCCGCTTCCGCAGCTCCCTCAGCAGCTGGTCGGC 926216 30 100.0 38 .............................. TTAGGGGATTACAAGTCGGCGAGGGAATTCGCCCTGAA 926284 30 100.0 36 .............................. GTGAAGGAGGTGGCGTAGGACTTTTGCTCCACCTGT 926350 30 100.0 37 .............................. CGGGCGATCCTGACGGCGGTGGACAACTTCTCTACAA 926417 30 100.0 36 .............................. AGAGTTTTCAAAGCTGAAACGCAGTTTGGCGAGGCT 926483 30 100.0 36 .............................. CCAGCGACCGCGTTATCGGTCTGGACGACTACAGCG 926549 30 100.0 35 .............................. GTAGAGGATTTTATTGTGCCGCTGATTGTACCGCG 926614 30 100.0 36 .............................. TGGCGGCCACGACGCGGTCCTCGCCGACTTCGGCAG 926680 30 100.0 36 .............................. CCTTCTTCCAGGGGCAGAACTTTCCTAACGGTAAAA 926746 30 100.0 36 .............................. AGCCGAGCAGTTCGTACGCGGAAAGCGAAGCTATAA 926812 30 100.0 37 .............................. TCGAAGACCTGTGCCGGGAAGTCCTCATCGCGGAGCA 926879 30 100.0 36 .............................. GGTGGTTTTAAAACGGTAGGTCTGAAAGGTCTTTGT 926945 30 100.0 35 .............................. GCCCAGGCAAAGCCATACCTAGGCAAGACATGGCT 927010 30 100.0 137 .............................. GGATCAGCGCCATGAGACCGGCGGTCAGCACCGGCCCCAGGCCGGGAATGCTGCGGCACCAACGCCCAATGTCGTATTGCAGAGTGAACTTGTCGAGGATGCGGGCTATCTCATCCTCGACCTCGGCCCACTTCCTG 927177 30 100.0 36 .............................. ATTCTGGTGGTGGGAAACCGAAAGCTTTCCTAAAGG 927243 30 100.0 35 .............................. GCCGACGCCTCAGCAGGAACTCCACACCCTCCCGC 927308 30 100.0 37 .............................. CCTTTGCAGGCGGCGGCGTTCGCCGCCCCTGCCTTCG 927375 30 100.0 36 .............................. CCAGGTCTATAAGAAGCAGCGCCACTTCGTCAGGAT 927441 30 100.0 39 .............................. ATTACGGTACCATCCTCCAGCTCGGTCTCACAAAGACCG 927510 30 100.0 37 .............................. CTGTCAGCGAACAGCGCGTGGTGCGGGAAAGTCGGCG 927577 30 100.0 37 .............................. CCGCACCTGCCGTTATCCGGGGGGGTTCACCCAGAAG 927644 30 100.0 34 .............................. GAAGTAGCCCAGGGGATGCCGGGGGCCGTGAAGC 927708 30 100.0 36 .............................. GTATGTGCACCTATTATCTTGGCGGAGTTTGCGAAC 927774 30 100.0 37 .............................. CAGAGAGCGCTCCAAACTGTCATCCAAAACGCCCACA 927841 30 100.0 36 .............................. GGGCAGCGGTCACGAACACCATGCCAGCGGGAACCT 927907 30 100.0 36 .............................. AACCCGATCTCCTCTAATTCCCCGGGATCGGGCTCG 927973 30 100.0 36 .............................. CTATCAGCACGACCGCCCTGGTGAGGTTGTGGCCGA 928039 30 100.0 36 .............................. CCGTCCCGGCGAACCGGGCCTGGCTGATCCAGCAGG 928105 30 100.0 37 .............................. GCCGAGCACTACGTCTAGGAAGCTGAAAACGTAGTGG 928172 30 100.0 39 .............................. GAGAGCACCGAGGGGCATAGCTACAGCCTTTCCAGGCTG 928241 30 100.0 36 .............................. GTGCCCTGCGCTGCCGGGTTCCCCGCGGAGTTGCAG 928307 30 100.0 37 .............................. CGCACAGTAAGAAGGTAATAATCTAGTTCCTTCACGC 928374 30 100.0 139 .............................. GCGAATGATTCAAGAGCGGAATATAATCTTCCGTTGACAAACCGGGCAAGGTATATCAGGTGCGTAGCTGCGGTGGCTTTCACTGGCGGTATCTCTCCTATAGTGCAGATAGGGGCTACCTGGATTTTGGGTGATGCAG 928543 30 100.0 36 .............................. GGCCACCCGGGGGCCCACCACGCGCCCCACTTCCCC 928609 30 100.0 36 .............................. CAAGCTTGGTAAGCAGTACATTCATGCCGTTGACGA 928675 30 100.0 37 .............................. GTTAGCTAGGGCCATAACAACAGCCAGGCAGAGGAAG 928742 30 100.0 36 .............................. GCACCGGCGGGCACCTGGCCCTGGCGGCCTACTACT 928808 30 100.0 37 .............................. CCAGGTAGGTCTCCGTCGGCTGCAGGAAAAGCTTGCG 928875 30 100.0 38 .............................. CGGTTGTCTGCTACCGCGTCGCACGAGCCTCACCCCGC 928943 30 100.0 36 .............................. GCTAAAGGCGAGAGTCTGCGGTCGATAGCCCGTGCT 929009 30 100.0 37 .............................. AACTGGTAGGTTGGCCGCAGATACGCGTTCCCATCTG 929076 30 100.0 35 .............................. TTCTCCTCCCTTCCCGTTTTTTCCTGGGGCATTCC 929141 30 100.0 36 .............................. AGGAATCCGAGACTCCGAACGGCAGGTGCGTGATCA 929207 30 100.0 37 .............................. TCCCTGCCTCCCAGCAGCGCCGGGGAACAACAGACCT 929274 30 100.0 36 .............................. TCCACCACGGCCCTCTTCAGCTCCGGGTCGGCAGTG 929340 30 100.0 37 .............................. ACAACCGCGCCGTGCCCCCGCTGGCCATCCTGGTCGG 929407 30 100.0 38 .............................. GCGCCCGCAGGTCGCCGGGCCTGACGCCGTCGCCGTCC 929475 30 100.0 36 .............................. ACCGCCATACTCTCTCCCCCTTTTTAGTTTTGGCCC 929541 30 100.0 35 .............................. GGACCAGCCGTTCGCCAGCGCTTCGTGCAGCACCT 929606 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================================================================================================================== ================== 57 30 100.0 40 GTTTGTAGCCTACCTATGAGGGATTGAAAC # Left flank : TTACCGACTGGATTTTCTTGAAACTGGTTCTGATGGCAGGACTCACCGGGCTGATTTTAGAGCTGCTTGTGGCACTAAACCTGCCTCTGGCAAGTTACCTGGTCTACGCCTTGCACCTGATCGTGGTGTTCCTGCTTATCCTGACGGCACCTTACAGCAAGTTTGCCCACGCCCTCTATCGCTTCCTAGCGGTTTACGCCTTTCATCTGGAGAAAAAGGAACAGGCGACTCCTGGAACAGCTGAGACCTAGTAAGGAACTAAGAAAAGATAAGGCCCGGCAAAAAGTCGAACCTCAAGAATTCCTCAAAAACTGTCGTCGACCTCCGGTAGCGTAAAAACCCCTGGAGGTCGACGACACTGCTTAAATCTTTTAACTATTGACAGGAACCTTGTGCTGTGCTAACTTAAAGGCAACAAGAAATTTAAGGATTCCGGCGAACGGTCGTTTGCAGTCCAGACACCATACTCCCGGAAGCCAGATTTTAAACCCACGAAACGG # Right flank : CAAGACTGCTACCGCTCGGTTAGGAAGGACTTGGCAGAAACGAATGACCAACAGCAAGTAGGGGGGCATAGATGAGTAAAGCATGGTAGCAAAATCGAAACAGTTATCACGGAGGGAAACCCTATGAGAAATAAACAATACGAATGGCATTTGAAAGCTCTCACTGATATCTGGACTGGCGACGTCGATCGAGAAAGTAAGCGGCTCATCCTAACAGGCCTTTTGGGCTCCATCCGCTGGTGGTTCGAGGTGCTGGTGCGAGGACTGGGGGGAAAAGCGTGCGACCCTACGGTAGATGGTGTGCGCTGTCCGGATGAAAAAGGCCATCGTTGTGTGGTGTGCAAACTTTTCGGCTGCACCGGCTGGGCCCGCAAGTTCCGGCTGATGGTGTTGAGTGAGAATGGGGACATCATTCAAAACCGGATTCAGGCTGGCCAGACCTTCATCTTGCGTTTTATCCCCCTGCGCCCCATCCACGACGAGGAATGGTGCCTACTGGA # Questionable array : NO Score: 8.93 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 991878-993835 **** Predicted by CRISPRDetect 2.4 *** >NC_013385.1 Ammonifex degensii KC4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 991878 30 100.0 36 .............................. CCGCCCATAGGGCCGGGGGTCTTCCCGGCGTTGATA 991944 30 100.0 36 .............................. AACATGCTACTTCTTCCCCCTTACCACCTTTCCAAT 992010 30 100.0 36 .............................. AAGTGCAACGCATTTCCCGCCGTCCAGGCCCCTGTA 992076 30 100.0 35 .............................. GCCATGAAGACGCGGTTCCTGTGCACCGCCACCAG 992141 30 100.0 36 .............................. GACATTCTGATGAGTCCTTCAGGGCGCGAGTAGACG 992207 30 100.0 36 .............................. CTCTTCCACTAGCCGCCATTCCATAGCGGCTAGTGC 992273 30 100.0 35 .............................. CGGCACAGCAGCGCTCCCCGCTTGACCCTGCGCCG 992338 30 100.0 36 .............................. CCTTCCACCCGCCGAAGACGAAGAGCGGCAGGCGCA 992404 30 100.0 37 .............................. ATAAGGTTGCCGTTCGCATCCCTAATGGTAAGCAACA 992471 30 100.0 37 .............................. AGTATTCCGGCTATCGCCCCCGTACTGTCACCACCTC 992538 30 100.0 37 .............................. TTAGGCTAACGGAAAAGTTACCTTTCTTATCTAGTAT 992605 30 100.0 37 .............................. CTCTCTGCGCCGAGTGCGGCGCGAAGGTTGCGGTATG 992672 30 100.0 38 .............................. GCGGGGGAGGTCCCTTCCCCACCGCGGCGGCCAACCCG 992740 30 100.0 36 .............................. GCTCGGCCAGCTGCTCGACCAACTGGGGATCAAGTT 992806 30 100.0 38 .............................. ACATCTGCACGGGCGGAGTTATGCGCGGCACCTTTGTC 992874 30 100.0 36 .............................. CCCGCAGCGACGACAGAGACGTGTCCCTCGAAGAGC 992940 30 100.0 36 .............................. CTTTTTTCGCTACCGTGCCGGCCTTTTGGCCATCTC 993006 30 100.0 36 .............................. TTCCCCCAGCCCCGCAGGTTCCAGAAGTGGGTGCGC 993072 30 100.0 38 .............................. CTGACCACGCTGATGGAAGTCTTCTGGGAGTGCTTCAG 993140 30 100.0 35 .............................. GCCACAGGAGCACAAGCCGTACTCTTTCGGAACAG 993205 30 100.0 35 .............................. AACGGGCCGGTCTCTCCGAGGGGTGGTTGATCGCG 993270 30 100.0 37 .............................. TCTTCCCGGGCGCGGCGCACCGGGTGGACGCGCTCCT 993337 30 100.0 35 .............................. AGATAGGCGACGGCGTGTTCCTGCGCCTGATGAAG 993402 30 100.0 38 .............................. AAGGGAGAAGGAGTTCCCGTTGCGCAGACAGGAGTGGG 993470 30 100.0 38 .............................. CCCTACTATTCCCACCACACCCACGACGTGACAGGCGC 993538 30 100.0 36 .............................. GTGTTCCCGGCAGGCTGCAGAAAGTGACGGGGTACG 993604 30 100.0 37 .............................. CGGGTGTAGTCCACGCCGTTGACCGTCTCGATCACGG 993671 30 100.0 38 .............................. GTAATGCTGGCATAAAGGCAGAGCAGGCGGGTACGACT 993739 30 100.0 37 .............................. ACATCTCCTGGAGCCCTGTCCAGGGCGCGAGCTACTA 993806 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 30 30 100.0 37 GTTTGTAGCCTACCTATGAGGGATTGAAAC # Left flank : GTTCGCCGCGCGGGCAAAAACTTCGTGGTGGCCGAGGTCAAAAAGAGCTCCCGCGCCGCCGAAGCGGCCCGGATGCAACTGGCCTTTTACCTTTACGAACTCAAGCAGATGGGCCTGGAGGCCGAAGGGGAGCTCCTTTTTCCGGAAGAGAGGAGGAAGGAGTATCTAGTGCTGACGCCGGAGCTGGAAGCAAAGATAGTCAAGATGAAGGAAGATATAGTCCAGATCATAGCTCGCCCGATTCCTCCTGCTCCGGCGCGCACTCGCTTCTGCGGTAAGTGCGCCTACGCCGAATTTTGCTGGGCATGAAAATGTCGTCGACCTCCGGTAGTGCAAAAACCCCTGGAGGTCGACGACACTGCTTAAATCTTTTAACTATTGACAGGAATCTTGTGCTGTGCTAACTTAAAGACAACAGGAAATTTAAGGCTTCCGGCGAATGGTCGTCTGCGCTCCAGGCACCATACACCCGGAAGCTAGATTTTATGCCCACAAAACGG # Right flank : CGTTTTTCTGGAGGGGCGTAAGCTCAAACTGTTGCCCTACCTTCAGGTAGAAAGTAGGAAACTTACCCGCCGTGTTCGGCGGGACGAAAGGAGGTGTCTGTGGCCACTTGATCAAAGCGTTGCCGCTGAGGTAAAACAATGGAAAAAGCTACAAACAGGAGGTGGAAGAGTGCGCTTCTCGCAGGGTAGAAGAGCTTTTGCTCTGAGGGTTCTGGTAGTGATGGCGTCAATCGCAGTAGTCCTGGGGGCCGTTCTTGCTCCTGCCTACGCTTTTGGTTTCGGCGTGGAAGGCTTTGGGAGCTCCGGGTTCGGCTACAGCACCGGTTTCGGCGTTGGTTCCGGCTTCGGGGATTCCGGGTTCGGCTACAGTCTCGGTTCTGGCACCAGCTTCGGCTTTTCCGGTTCTGGATCGAGCTACGGCTTCAGCACCGGTTTCGGTTCGTGGGACTCTGGGCTCGGCTACGGTCTTGGTCCCAGCCACGGTTCCGGCAGCTTCGGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTTTGTAGGGTACCTATGAGGGATCGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 1042896-1043922 **** Predicted by CRISPRDetect 2.4 *** >NC_013385.1 Ammonifex degensii KC4, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1042896 30 100.0 38 .............................. ATGAACTCTCCTAGCGTCATGGCTTCCACTACCTTCGG 1042964 30 100.0 37 .............................. AGTACTGAAGAAGGCGGCGCAAGCCCCTTCTCTCCAG 1043031 30 100.0 35 .............................. TACCTACTGCACCCCAGGCTGGGAAGCCCGGGTGC 1043096 30 100.0 37 .............................. GGTCGTGGACCCCTTTGCGGGCAGCGGAGCTTTCGGC 1043163 30 100.0 37 .............................. CCGATGTACCCCCAACGGAGGAAGTCCTGAGGTTCTT 1043230 30 100.0 36 .............................. GGAAAGCGTATGTCTAACGCCCCCCGGATGGTGGAG 1043296 30 100.0 36 .............................. AGGATATCCCCCGGCTGCACCGGTTCCAGGCAGAAA 1043362 30 100.0 37 .............................. CTGTATACTTGAGCCACCGCAAGAGGGACTATGTAAA 1043429 30 96.7 36 .............................T GTGGAACGGAGCACCAGCGCCAGGAAGTTCAGTTCC 1043495 30 100.0 37 .............................. CTTATACCACCCCTTTCGTAAAACGCCTGCAGATCCG 1043562 30 100.0 36 .............................. TGGGCCTGCCGTGCTTTAGCTCCGCCACCGCCTCCC 1043628 30 100.0 37 .............................. TGCCGCGTCGCCAAGCATGCCGTGAATCGCCACCCAC 1043695 30 100.0 36 .............................. AACTGCACGAGGATGTTGTTGATAAGACTGAAGGGA 1043761 30 100.0 36 .............................. TCAAGGTCTTCTACTCGGACGGCAATTCTCCCTCTC 1043827 30 100.0 36 .............................. GGGAAGCGCACGTCCAGCGCCCCCCGGACGGTGACG 1043893 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 99.8 37 ATTTGTAGCCTACCTACGAGGGGTTGAAAC # Left flank : GTTCTTGAGGGGTACGGTTGGGCATTCTTTTTTTGGGGCCGCGAGGGAGGATACAACCGGACAAGTTTCCGCCGGATTCGTTTAGGCGTTTGCGCAGTTTATAGATCCAGCGGACGGAGCAGCCCATTATGCGGGCTACCTCTTTAGGGCTACAGGTGGTGAGGAGGGAGGCCACGGTTTGGGCGATTGCCTGGGGGTTTCCGCTCCTCTTAAGTTGCTGGTATAATGTCATCGGGTGGGGTTCCTCCTTTCTTTAAGGTACACTTGCCAGAAGTGTAGAAGGGAGGGGATCCCCACCCTCTTTAATACGCTCTTCAACTTCAAAAACCTCTGTGAACGAAACTCTGGCCCTTCTACACTGCTTAAGTCTTTTAACTATTGACAGGAGCCTTGCGCTGTGCTAACTTAGAGACAGCGAGAAATTCAAGGCTTCCGGCGAACGGTCGTTTGCGGCGAAGGCGCCATTACGCCGGGGGCCGGATCTCAAGCCCACAAAACGG # Right flank : CTCCGCCCATGCCGGTCTTCGTCCCCGCCAACACGGATTTATAGCCTGCCGGCAGTCGAGTTGCACAGGATCAGGAAGCGAGGGAGCGGGGGAGGGAGCCGTTGGAGCCGGCTCCCTCGCCTCCGAATGGTTAACAGTGCGGATGTTGCGCTTCGCCGGAGGAGGGGGAGGAGTGCTTGGAGAGCTCCTTATCGGTTCAGGAGTCGTGATAGGGTGGTTGTGGCTGCGAAATTACCGGTGGAGGCGGCTTCACGAAGAACTCAGTCGTCCGGTGGCTACAGAGCTCGAGGATAATTCCTGGTACCGGATCGTGGAGCCTGCTGTGATCGGCGGGATTGCTGCTTATGACGCGGTCCACGCCTTAGCCATGATAGACGATCGAGTGCTGGAGGCTATGGACTTTTCCAGCAAGCTCGACCTCGGCACGTTCAACCAGCTCAGCGAGTATGTCCGCCAGCAGTTCTTTACTGGTAGCGAGGCTTCCGTAGCTGGTGCTGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTGTAGCCTACCTACGAGGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 6 1775566-1775088 **** Predicted by CRISPRDetect 2.4 *** >NC_013385.1 Ammonifex degensii KC4, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1775565 37 100.0 38 ..................................... AACCTATGACGATGTGCGCTTCTGGCTTGACAAGCCAC 1775490 37 100.0 35 ..................................... GTACGCCGTCCCAGTAAGCCGTACCCGTGCCGGCC 1775418 37 100.0 36 ..................................... TTACGGAGCAGTTGGAGAAAGGGTTGGAAGACATAG 1775345 37 100.0 37 ..................................... CAAAGTCCTGCCACTCAAGCGGGATGAAACCTATGGA 1775271 37 100.0 35 ..................................... TACAGTTCGCCGCCCAGGCCGCCAACGTCACGGGG 1775199 37 100.0 38 ..................................... TCCCCGGCGGCGGGGGAAGCCCTCCCCGTCTTCCTGGT 1775124 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 100.0 37 GTTGCAGTACCTTCCCCGATGACAAGGGGACTGAAAG # Left flank : CCATGTTCCGCGGGGCGCTGGAGAAGCTCATGCAGCGCGAAGAAGGCGTCCGACGCGACTTCGCCGACACCCAATACGCCCAGCAGTACTACAACTTCTCCCAGCCTTAAAAGCTTCTTAAAAGTCGACAAGCCGGGGCCGTTGTTCCCCGGCTTTTAATTTTTGGGCGCCGGACGGCCGGGGTTCCGCACCACAAGGCAAAGATTACTGGGGAAGAAGGAATTTTGAGGGGGACGGCGAACTAGCCTCACAGCAGGGAGGAGAGAAATTTTCGAAAATGGAATGGCTCTGTTCCAGTTTATGGTAAGGAAATTGCGCTGGGCAGAGAAGCCAAAAGGCTGAAAGTCTTGGGGGACAAGGGTTTCGGGCTAGAGTAATTTTTCGAAGGAGAAGAGACTTTTTATGCAAAAAGGTCATTTTCGAAAAATCAGTTCTCTCCGGAAGAACGCCAAATGGCTGGAACCCTTGCGCTCCGAGGAAAAACGGCAGGCAATCGCGGG # Right flank : TAGGGGGGAGCGGGGACGATTTAGAAAACATCTACGATTTGGCAGGGAAAAAGTTTTCCGGCTCGAATAATAGCAGAAAATAACTATGGATTTCGGTGGTACCCAATGGAGACGGTACCATGTCCGGAAAAGTTGCTCCTTGCCTGCTACCGTATCTGCCTGCTGGCCGGGCCGGAGGGGCTTTCACTTCCCCCTTACAAAGGGAGCACCTTGCGCGGCGGCTTCGCCGGCACTTTCCAGAGGCTAGCCTGCGGTACAGGAACCAGGCAGTGTAAGTCCTGCCCCCTGCGGCATCAATGCCCTTACGCCCTGGTTTTTGAGAGCGGGCCCCCGCCGGAGGCAGAAGCTCTGCGCAACTACGAAAGTATACCCCGTCCTTTCGTTCTGGAACCTCCTCTAGAAACCAAAACCGAGTACGCCCCCGGTGAGCCCTTAGTCTTCCATCTCCTGCTCTTCGGCCGCGCAGTAGACTTCCTTCCTTACTTCATCGTCACCCTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTACCTTCCCCGATGACAAGGGGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA //