Array 1 844132-844289 **** Predicted by CRISPRDetect 2.4 *** >NC_013740.1 Acidaminococcus fermentans DSM 20731, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================= ================== 844132 27 100.0 39 ........................... CGCCTCAGTAGCCTGCATGGTGGACAGGCTCTGGTTCGC 844198 27 100.0 38 ........................... AGCCAGACCATCGCCCCGATTTTAGAGCAATACGGTCG 844263 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ======================================= ================== 3 27 100.0 39 CCCCCGTATGGGGGCGTGGATTGAAAT # Left flank : TCCCAAAGTCCGCCCCGGGAGGGGCGGGGGACCATGCGCAGCATGGTGATGGGGGCATCGGCAACAGCCGATATTTTGCAGGCCCCCTGGACAACAGAAGAACATGGTCCAGCAGCCGGTACAATATCCAAACCGGACAATCTGACGTCTTTATCAACTGTCGCGATGAACGATATATCTTTAAACCAGGCGTTTTTTTACACCGGGAATATGGTATAGTAGAAGAAGTAGAAGAAGAAAATATCATCCTCTTCCGTTATCTATAGCTTTTCGACAACAGAGAACTTCCCCATATAGGGAGAATGGGAGACCATCATTATCGTTCTCGCGGGAGTCAAACAGACCTACAATCTGGAAGCTTCCATAATCCTGCAAGTGCGAGAGGGAAGCGAACAGAAAGAACAAGCATCTGGAAACGGGAACTGGAAAATCTGGAAACCGCCTTTCGCGGAAAAAGATGGAAGAACTTGAGAAACTCAAGCTGGCCCGTCTGACGTCGC # Right flank : TTCGTATGGTAATCCGGCGGGGAGCCTTTGTGGGTGGATGGGTATAGGTTTCTTTGCCTTGACAGAACCCCCTACCCGCTGACGCGGGTCCTTTCCCCCTTTCAGGGGGACACAGGTAGGGACGGGCGTCTGGCGGGGCGCCGGGCCTGCGCCCCCTACGGCATCGCAATGGGTCAATGATGAAGGGTTTACCGAGAACCTGTTGATACAGACTTCCCCGCCCTTTTCCTTCATTTCCCCGGGTTTTTATGGTAAAATGAAAATTATATCCAAATACCCATTCTGTTGTGCAAAAGGAGCCTCTTTATGTTCCATACGGCCTTTTCGGAATCCGATCCCGATTCCTTCATCCATCATCACCTGAATTATTTCCTGCCCACCATCTATACCATCACCGACTGGGTGATGATCCTGCTGGCGGAATTCCTGGCGTACCACCTGCGGGGGGCTGTTACCGGGAACACCCATTTCCATATGCCCTGGCTGAACTTCTGGGTGGC # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCCGTATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 882151-886363 **** Predicted by CRISPRDetect 2.4 *** >NC_013740.1 Acidaminococcus fermentans DSM 20731, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================================================================================================================================= ================== 882151 31 100.0 35 ............................... CTGGAACCGGACGTACATGTCATTGAGCGATGCCC 882217 31 100.0 34 ............................... CTCTGGAACCGGAAAACTGGCAGGAGCAGCAGGC 882282 31 100.0 35 ............................... CTACATTTCCCACATATATATAGGGTACGTATATA 882348 31 100.0 33 ............................... CTGTTAAAGCTAATTCAAATCGACGACCCAGTG 882412 31 100.0 34 ............................... TGGATAAAGTAGGTTTATCAAACGTTGAAATTAT 882477 31 100.0 34 ............................... TGGCTCGCTTTGGCGGCATCCCTTGCGGCGATTG 882542 31 100.0 35 ............................... CCCTGGCTACAACGAGGAAGGCGACCCGCGGGGCA 882608 31 100.0 34 ............................... CATGAGCTGCCCAGCAATGCGGAACTGGATTATA 882673 31 100.0 34 ............................... CCCAGGCACATAGAGCAGGTTGAAGCTGTTCTCC 882738 31 100.0 34 ............................... CACCATCTGCCCCGGCGTGCTGTCCACTCTCAGA 882803 31 100.0 33 ............................... CTGCTACGGGCGACTTATCCGCTATGTACATCG 882867 31 100.0 33 ............................... CATGGGATCCCATATCGAGGAGTTGGTCAAGCA 882931 31 100.0 33 ............................... CTGTTAAAGCTGATTCAGATTGACGACCCAGTG 882995 31 100.0 36 ............................... GCTGCAATGGGATTTTTGCAAAACGGCGATTCAACC 883062 31 100.0 35 ............................... TGGTTCGGGCGCGGTACGAGTTAAGGAAGGAGCAA 883128 31 100.0 34 ............................... TTCGCCGGTTTTCCACGAATCACAGGGGAATCCG 883193 31 100.0 35 ............................... GTAATGATTGTTACCATGCTAGAAGGGCTGATTAA 883259 31 100.0 33 ............................... CCGCCCTGAAAAAGCTGAAAAACGAGAGCAGCA 883323 31 100.0 35 ............................... ATCTTCATCCACCAGGCCCTTCCCGATGAAGCCTA 883389 31 100.0 33 ............................... AGCCCGTAGATCATCAGCAGTTCCCGGTAGTTG 883453 31 100.0 35 ............................... TTCCGGGCGTGCAGAGAGTGTGGCGGTGTTTTCCG 883519 31 100.0 34 ............................... AGACCTGGTATAAAGAGGAGGTGGGCGTAGATGT 883584 31 100.0 34 ............................... AAACAAGTGTTAATCCTTGCAACGCGCCTGGACA 883649 31 100.0 35 ............................... CGGACCGGCAGCGGCGCCAAGAAATCCCTGGATGG 883715 31 100.0 33 ............................... GGTGATGCGATGAAGGTTCAGTATCGCGATTCT 883779 31 100.0 34 ............................... GCCGGACTGACCATTGTAAACGCCATCCAGAACA 883844 31 100.0 36 ............................... CTTGTCCACGCTGGCAAATAAAGCAGCTAGGGCGGG 883911 31 100.0 35 ............................... GGGACCATCGTCAAGGAACAGGACGGGAAAATCCT 883977 31 100.0 33 ............................... ACATTCCTGCTCATGGTCCAGGCTCTTGTGACA 884041 31 100.0 35 ............................... CTCCACCGTGTGGGCCTGGATGCCGCTTCCCTTCA 884107 31 100.0 34 ............................... TGTGATATTGGCCGCCGTCACCTTATCCCCGGCA 884172 31 100.0 35 ............................... ATCGACAGAGAGTTTATGAGCAAATTCCCCGTAGG 884238 31 100.0 35 ............................... CGAAGTCGACGGTAAAGCCGTCCGGAGTGTTGGGA 884304 31 100.0 36 ............................... CACCGCTTCCTGGGTATGCAGGTCACGGATGGCGTC 884371 31 100.0 34 ............................... AGGACGTCCACCTTAAAGTACTTGGCAGCATCCT 884436 31 100.0 36 ............................... GTCGAGGGTCATTTAGAGCCCTCCCTTCTTTATGCG 884503 31 100.0 34 ............................... TTATTCTTCCAGCTCGGGGCATCGCTGTATTTGG 884568 31 100.0 35 ............................... CTACCACCACCTGGGACAAGGCAGGCGCCACCATC 884634 31 100.0 33 ............................... GGCAGCAGTCCCGCCTCCGGTCAACGTCTTGTC 884698 31 100.0 34 ............................... TCATTATTCGACATTATGCGCCACCCCTCTGATG 884763 31 100.0 35 ............................... CTGGAACCAGGTGTACAGGGCATAGTAGAATTCAC 884829 31 100.0 35 ............................... TCCATAAAAGCTACCACCAATTCCAATGAAGTGGT 884895 31 100.0 35 ............................... TAAAACCTGGGCCGGGGTGGCCAATGACCACGCCA 884961 31 100.0 34 ............................... CACGGCGGAACCGGCAGCCGTGCCAGGCAGCGCT 885026 31 100.0 35 ............................... CGTTACCGATTTGGTAACGGAACTGGAAAAAATTG 885092 31 100.0 35 ............................... CAGGCAGCGGCCACCGGCCAAAATGGTGCCGTATC 885158 31 100.0 35 ............................... GTTGTGGCGGCTATCGCCTCACTGGTGAATGGCTC 885224 31 100.0 34 ............................... CTCCCATAGGCTGAGCTGGTGGAGCATGGATTGG 885289 31 100.0 35 ............................... CCGCTGACCACGCAGCTTGGCTTATGGATCATAAG 885355 31 100.0 33 ............................... TGGCGGCGAATAAAGAAGAGATTGTGGACATCA 885419 31 100.0 34 ............................... CTTGGGGCGATGGCGGGGGCATCCTTTGCGGCTG 885484 31 100.0 34 ............................... TCCAGGGCAGGCTGTAGCCATAAGGTCACAATGC 885549 31 100.0 36 ............................... AGCAGGGCCCCGTGGATACCTTTCATTTTCGCACCA 885616 31 100.0 34 ............................... ATTGTTTTGATGGTTTTATTGGCCCATTTTGGTC 885681 31 100.0 34 ............................... ATGGTATAATATAGGCGTGAGGTGATAGCATGAA 885746 31 100.0 34 ............................... TTGAAGAGAAACATCAACACCATCTTCCTGATGC 885811 31 93.5 35 ..........T.T.................. TGAGAATTGTATACATTGAAAACATGGACGGCGAG 885877 31 93.5 33 ..........T.T.................. TGGCCGCTTGAATAGTCATGTTAGCCGGTATGA 885941 31 93.5 35 ..........T.T.................. CACGACGGCAGCATCGCCAAAAGCCGTCTTGCCTT 886007 31 93.5 34 ..........T.T.................. GCAGTGAGCTACGACGAAAACCCGAGCTACATCG 886072 31 90.3 34 ..........T.T.........A........ TCTGATACAGATCTGATTACTGCGTCCCAGCAAG 886137 31 93.5 161 .....................AA........ TCGTATGGTAATCCGGCGGGGAGCCTTCGCAGGTGGATGGGTATAGACGCTTTTTGCCCTTCGGGTGGCCGGGATGGGTTTGCCTTCGGCGCCCCCTACGGCGTTGGTGTCGGAGGGACGGGGGATTAGGCGGGGCGCCGGGCCTGCGCCCCCTACAGTCT C,GA [886141,886155] 886332 30 80.6 0 ..-...TT.A...T...A............. | GT [886338] ========== ====== ====== ====== =============================== ================================================================================================================================================================= ================== 63 31 99.0 36 GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT # Left flank : CTTTTCCCCTATGTCCAGGCTCTGCTCCTGGCCAAATGGCTGAGAGAAGATCTGGATGGGTATCCGGCATTTTTGGGGAAGTGAAACAATGCTGATCCTGGTAACGTATGATGTAAATACCGAAACTCCGGCTGGAAGAGCCCGGCTGCGGAAAGTGGCCAAATGCTGTGTGGCCCACGGACAGAGAGTGCAGAATTCCGTATTCGAATGCCTGCTGGACCAGGCCCAGTTCGTCCTTCTGAAAGGAGAACTGGAGGCCCTCATCGACAAAGACCACGACAGCTTGCGGTTCTACAACCTGGGAAACACATATCAGAACAAAATCCAGCACCTGGGAGCCAAAAGGACCTATGACCCAGAAGCTCCCATGGTGCTGTAAGCGCGAAGGGGAAGCAAACAGAAGGAACAAGCACCGGAAAATGGGGCTTGGGAGATCCGTGAACTGACTTTCGCGAAAAAAGACGGAAGCGCTTGATGCACTCAAGCTGTCCCGTCTGACA # Right flank : TTGTATACAAAAATCTGTTATAATAGCCTCATGCTTACAAGTTACTGGAACAAAGTGTATTCCAGTAGAAGAAACGAGGGGAAGTTATGGGAAGTATTGTATCGTTGACGGTGCTTTTTTGCATTTATGCGGTCAGTGAGCTGATCGCCATGCGCACCCGGGCCATCCTTTCTACGGTGCTGGGGATTTCGGTGATCCTTCTGGCGGGGTTCTGGTCGGGGATCCTGCCTCAGTCCATCATCAAGGATGCCCAGGTTTCGGGCATTGGCATGGGGGTGGTGGGGATGCTGATCGTCTCCATGGGGACCACCATTGATTTTGCGGAACTGAAGCAGGAATGGAAAGTGGTGGTGACTTCCATCCTGTGTGTGGTGTTTGCGGTGGCAGCCATTATCCTGGTGGGCGGTTTTGTCATGGATCCCAAGATCGCCATTGCCGGATCCCCTATTTTTGCCGGGGGCAACGCGGCTACCCTGATCATGTTGGCGGCAGCCAAGGAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCAAGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //