Array 1 2793-4094 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEWX01000122.1 Riemerella anatipestifer strain RA2 Scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 2793 34 80.6 31 .....................-AGA...G..-.C.. CATCGCTGTATTTCAGGAAAAAGGAAAGCGA G [2810] Deletion [2858] 2859 36 94.4 81 .....................C.G............ CTCCATTGAAAATACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACAAACATTTTTTGCATCCGTAGATGAGAAAG 2976 36 100.0 81 .................................... CTCCGCTGAAAACAACAACGAAGCAGTGAGTAAAATGAGAGCAGTCCCAACAGTTTTATTTGGATTGTTCAAGATACGACC 3093 36 100.0 80 .................................... CTCCATTGAAAATACAACGAAGCTGTGAGTAAAATGAGAGCAGTCTCAACACGCCATTGTGCCGATAAAATATAGGCTCT 3209 36 97.2 82 ........................C........... CTCCGCTGAAAATAACAACAAAGCCGTGAGTTAAACTGAGAGCAGTCCCAACAGTTACTTTTGCGAGCAATAGCCCTGCGAT 3327 36 97.2 81 .....................C.............. CTCCGCTGAAAATACAACAAAGCCCGTGAGTAAACTGAGAGCAGTCCCAACCAGAGCCAAAATTTTAGACTATTGTTATCA 3444 36 97.2 80 .....................C.............. CTCCGCTGAAAATATAACGAAGCGTGAGCTAAACTGAGAGCAGTCCCAACTGATAGAATTTTCGGTTTGCTAAGAGCGGT 3560 36 97.2 81 ........................C........... CTCCGCTGAAAACACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGCAGTAGAGAATTAAACTCGCAAGAATTAG 3677 36 69.4 30 ...................ATGAGA.T.G..C.A.C CTCCTATACTTTGTGCAGCTATTGTTACAG Deletion [3743] 3743 36 66.7 30 .................G.ATGAGA.T.G..C.A.C TTTCAACATCAATCTAAGGATAGGTATTTC Deletion [3809] 3809 36 66.7 30 .................G.ATGAGA.T.G..C.A.C CGCAAACAAACGATTGATAGAAGATTGCAA Deletion [3875] 3875 36 69.4 30 .................G.ATGAGA...G..C.A.C GTTACTTTGGAGAAATTAGAGCTAGAGGTG Deletion [3941] 3941 36 91.7 82 A..................A.C.............. CTCCGCTGAAAGCAACAACGAAGCAGTGAGCTAAACTGAGAGCAGTCTCAACAATGGCTCACGACTCGGCGATGGCTTTACT 4059 36 94.4 0 ........................C.......T... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 14 36 87.3 62 GTTGTGAATACCCTTCAAATGTTATGCATTCACGAA # Left flank : CATTAAAATAGATGGCGACAACCCTAAAAATGGTATCGTCTTTAAAAACTTAGACAATCAAAATGAGGTAAAGCTCTCAGCAGAGCATATTGTGCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCAGGGAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTATTGAAAGAACCCCGCACCGAAACACTAAGCACACCTATTACTATTGTGTAGTGTGTTTTTGGTACTTCTAAATAAAGACCGCCCTTCCTTAGTACTAAGGAAGGGCGGTCGCTTTATAAGAGGAAGCTACTTCACTGCCTAAGGCGAAGGCTCTTCTCTCGGTAAGGAGAAGAGCCTTCCCTCGTACGAGGGAACCGACTTCGTCTGTACTAAGGAAGTGAGGTATTTTCTGTAATAGAATCAATAGAAAGCAAAAATCCCTGCTCTGTACCGTACAGAGCAGGGATTTTTTTTGCCCTCAGGT # Right flank : ACTCCGCTGAAAATAACAACAAAGCTGTGAGTAAAATGAGAGCAGTCCCAACGCTACGGTTATCAGTATGTATCTGGAGCTAGTTGTGAATACTCTTCAAATGTGTGCATTCACGAACTCTGCTGAAAACAACAACAAAGCCGTGAGTAAACTGAGAGCAGTCCCAACAACTCCTTAAGATATTTAAAAGCGTGGCTAGTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAACACGGTTGGGATGATACTGTCACCGCTGGAAGTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAACGGTACAAAGATTATAAATCTTCATTGGTGGGTTGTGAATACCCTTCAAATGCTGTGCATTCACGAACTCTGCTGAAAACTACAACGAAGCCGTGAGCTAAACTGAGAGCAGTCCCAACAGTTTACACCAGCAAAAGGGACAAAAAGATGTTGTGAATCCCCTTCAAATGCTTAAGCATTCACGAACTCCGTTGAAACAAC # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:0, 6:0.25, 7:-2.40, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAATGTTATGCATTCACGAA # Alternate repeat : GTTGTGAATACCCTTCAGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: F [matched GTTGTGAGTACCCTTCAAAATGTGATACTTCCCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //