Array 1 218251-216571 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPB01000039.1 Salmonella enterica subsp. enterica serovar Thompson strain ABBSB1050-2 NODE_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218250 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 218189 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 218128 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 218067 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 218006 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 217945 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 217884 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 217823 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 217762 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 217701 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 217640 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 217579 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 217517 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 217455 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 217394 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 217333 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 217272 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 217211 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 217150 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 217089 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 217028 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 216967 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 216905 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 216844 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 216783 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 216722 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 216661 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 216600 29 93.1 0 A..............A............. | A [216573] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235486-234421 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAPB01000039.1 Salmonella enterica subsp. enterica serovar Thompson strain ABBSB1050-2 NODE_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235485 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 235424 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 235363 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 235302 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 235241 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 235180 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 235119 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 235058 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 234997 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 234936 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 234875 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 234814 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 234753 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 234692 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 234631 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 234570 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 234509 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 234448 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //