Array 1 83598-84236 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROC01000013.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001354 CFSAN001354_contig0012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83598 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 83659 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 83720 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 83781 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 83842 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 83903 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 83964 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 84025 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 84086 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 84147 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 84208 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : CTACCAGGCCCGTTTGTCTCAACCATGACCAGGTGTTCCCCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 928-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROC01000196.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001354 CFSAN001354_contig0195, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 927 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 866 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 805 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 744 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 683 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 622 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 561 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 500 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 439 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 378 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 317 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 256 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 195 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 134 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 73 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGATTCGACGCTCAGGCCGTTCTCTTTTAACCG # Right flank : GTCCGTCTCCGCCAACGCCTTTAGCCCATCCAGGTGTTCCCCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19586-18640 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROC01000075.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001354 CFSAN001354_contig0074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19585 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 19524 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 19463 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 19402 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 19341 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 19280 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 19219 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 19158 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 19097 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 19036 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 18975 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 18914 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 18853 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 18792 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 18730 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 18669 29 96.6 0 ............T................ | A [18642] ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACCGTTGACCGGACTCGCGGTTATTCAACTAACCG # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 14-589 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROC01000081.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001354 CFSAN001354_contig0080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 75 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 136 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 197 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 258 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 319 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 380 29 100.0 31 ............................. GATGATCGTTTTTTTCGTACGTCGCGCAAAT 440 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 501 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 562 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAACTAGTCATGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17212-17911 **** Predicted by CRISPRDetect 2.4 *** >NZ_LROC01000081.1 Salmonella enterica subsp. enterica serovar Tennessee strain CFSAN001354 CFSAN001354_contig0080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17212 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 17273 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 17334 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 17395 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 17456 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 17517 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 17578 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 17639 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 17700 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 17761 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 17822 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 17883 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TACACCAAATGGGGGCCAGCAAAGAAAATGCTGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //