Array 1 39-1651 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKL01000030.1 Campylobacter fetus subsp. testudinum strain wqj2 contig00030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 39 29 96.6 37 ...............T............. TGATATCTCTTCCATTTCTTTATCCTTTTCTGTATTC 105 29 96.6 38 ...............T............. TTGCATATTTTCTGCTAGATTCATGCCTATGCCTGTTT 172 29 96.6 36 ...............T............. TTCTTTTTTGAGTAATGGATTGTCATAACTCGAAAA 237 29 96.6 37 ...............T............. TCTTTCATCTTCCCCATTTAGAGGCTTTTGCGTGTTC 303 29 96.6 37 ...............T............. TTAATTTTTTCTTTAAATAGCATATCTTTAAAGATAT 369 29 100.0 37 ............................. CATTCTTTCGTTCGCCACATGGAAATGTAGTATATTT 435 29 100.0 38 ............................. CTTTATAGCTTGTCTTTCTGCCTCGCCGCTACTTTTCT 502 29 100.0 37 ............................. CTCACCTATGAACAGAGCTAGTCCGTTTTCATTTATT 568 29 100.0 36 ............................. CTGGAGTCTGCTAAATATTGCATAAGCTTTGGACTT 633 29 100.0 37 ............................. CATGCGAACGCCCCAGCTAGTGGTGGCTTCCTTTTTA 699 29 100.0 37 ............................. CACATACTGCAAAGCTTTTTCCAGGTCTTGCACACCA 765 29 100.0 38 ............................. CTTTAATGGATCTAATAAATAAAGCGTTCTTTCGCCGG 832 29 100.0 37 ............................. CCTTATTAAGCAATCTTATAAGCGTTTTTATATCTTT 898 29 100.0 36 ............................. CTTGCAGCGAACTTTACTAAAGCGTCTTGCGGTAAG 963 29 100.0 37 ............................. CTGATATGCCCATTTTACCCAGCTCGTTACTCGCAAG 1029 29 100.0 37 ............................. CAATAGTAATTTATCTAAGCCATAGTTATTTGCTATA 1095 29 96.6 37 ...............T............. CAATAAAAATTTATGGTCATCAGGTAAACTCTGATAA 1161 29 100.0 37 ............................. CTCTAAAATGGGAAAAAGATGAATAGCTAAGTTTTTA 1227 29 100.0 37 ............................. CAATTTATACTGGTCTGCAGAAATGGAGCTATTTTTT 1293 29 96.6 36 ...............T............. CGTTGAATTGCAAGAAAAATATATAAAAACTATACG 1358 29 96.6 38 ...............T............. CAGCCCCTTTGTTTCGTACTCATATTTGTCGCCCAACT 1425 29 96.6 36 ...............T............. CCCCGTTAAGGGGTGTGGCTTTATAAACATATTAGT 1490 29 96.6 37 ...............T............. CAGTAAAGAAAATGAGTTTGCAAGGGTTTAAAGAACT 1556 29 96.6 38 ...............T............. CCTAAGACTTACACCTGTTTTTGATACATTAGAAAACA 1623 29 75.9 0 ..........A....AGC.C..A..A... | ========== ====== ====== ====== ============================= ====================================== ================== 25 29 97.5 37 GTTTGCTAATGACAAGATTTGTGTTGAAA # Left flank : TCATTATTATACTCCTAAAAGCAACGAGTGCATTTACGG # Right flank : ATCATATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAACGATGAAGTAGTTAAGCACATAGACAAAACTGGAGTGGAGAGAGTGCTTAGTAAGCAAAACTATTTTGGTGAGAATAACCACTCTAAACCATTGTACAAAAGAGTTCCTAAAAGCGATGTTGTAAAGGCTTTAAACTCTATAAATACAATAGCTAAAAATAAGGATAACAAATATATAAACGCCTTTAGTGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTATAAACATAAAGATGGTAATAAAGCTACTTTTAATTAT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAAGATTTGTGTTGAAA # Alternate repeat : GTTTGCTAATGACAATATTTGTGTTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 24461-22838 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKL01000023.1 Campylobacter fetus subsp. testudinum strain wqj2 contig00023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 24460 29 100.0 38 ............................. ATTAGTGCATAAGCTTAGCATATAAGATGCCGTATAAG 24394 29 100.0 36 ............................. TGATTATTTAGTGTTTCTACGTACATTTTAACTTTT 24329 29 100.0 38 ............................. TACAAATATTTTTGAAAGCAAATACTTTGTCAAAATTT 24262 29 100.0 38 ............................. ATTAAAAATTGCCGTTTGCATTTTCTTTAAAGAAATGC 24196 29 100.0 37 ............................. CTCTGTGTAGAATTAGAAACAATATTTGCAAATTCAA 24129 29 100.0 38 ............................. ATTTGCTATTTGCAAATTTTGCAGGGACGGCTTTACCA 24063 29 100.0 38 ............................. CTTAGCTCTTGCGATGGCTTTATCAAAATTCATATTTA 23996 29 100.0 38 ............................. CTGTGGTAGCCCCCTGCTTAACCAGTTGTTCGAAAGTA 23929 29 100.0 35 ............................. GTTTCCTACGCAGGACAAAAGAGCGCATACTCTGT 23863 29 100.0 36 ............................. CGCGATTTTCTTTAATAAAATTAATCGCCTCGTCTG 23798 29 100.0 38 ............................. ATTTGCCTTGTGTTAGTCTTATGGTTATTTGGTTAGAA 23732 29 100.0 36 ............................. CATAATTATTGAAGAATATTTTTGTTTTAGACTTCT 23667 29 100.0 39 ............................. CTTGCAGACTTTCCACTCTACTTTGTCTTGTTTGCCATT 23599 29 100.0 36 ............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 23533 29 96.6 37 ...............G............. CAAGATTTCTATTAATAATCAAATTTTAGAGGAACAA 23467 29 100.0 37 ............................. CGGCGAAGGACACTGTTGATAAAGGCATAGCTAGTGG 23401 29 100.0 36 ............................. CTTTGATGATAACTTTTTGGCTCTTTTGTGTGATAT 23335 29 100.0 36 ............................. TCTTCTGCGCAGTCTATGTAATTTTTTACATTTTCC 23269 29 96.6 38 ...............G............. CTAAAAATTGCCGTTTGCATTCTCTTTAAAGAAATGCT 23202 29 100.0 37 ............................. CATTTCTGGGGTCATACTCTCTCCGTCTGCGATAACT 23136 29 100.0 37 ............................. CTTTGTAAGCTTGTTTAACTCTGTAGATGCAAATCCA 23070 29 100.0 42 ............................. CTTTGCGTTTTCGACCATGGCGATTAGTCTATCTGTATCTCG 22999 29 96.6 36 ...............G............. CTAACTTCGTCTCTTGCATATCCTGCAAAAAACATA 22934 29 93.1 39 ......................A..A... TAGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 22866 29 72.4 0 ..........C....AGC.CA.A..A... | ========== ====== ====== ====== ============================= ========================================== ================== 25 29 98.2 37 GTTTGCTAATGACAATATTTGTGTTGAAA # Left flank : TTAT # Right flank : TCACATAGAGCTCCAAAGCAGCAACATTCAAAACGCTAAGAGTATAAATGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGCAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAAATGAAAAATACAAGCCCATTAAGCAAAGATGAAGCAGTTAAGCACATAGACAAAACTGGAGTGGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACCGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAAAATAACAAATATATAAACGCTTTCAGTGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTATAAGCCTAGCCAAAATAAAAAAGAGGCATTTGGTTACTTTAAAAATGCTTCAATAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 4169-5779 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKKL01000038.1 Campylobacter fetus subsp. testudinum strain wqj2 contig00038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4169 30 100.0 35 .............................. CTATTCTTTTTAAAGCTTCATCAACATAGTTTTTT 4234 30 100.0 36 .............................. TGAAACTTTTAGCGACGATCTTATAATGCAGCACGG 4300 30 100.0 35 .............................. AGCAAACTCTCTCCTGATGCTTATATACCATTTCA 4365 30 100.0 36 .............................. TTATAGAAATATTGGAGATAAAATGACAATTAAAAT 4431 30 100.0 36 .............................. CCACAAGATAGCAAGAGCTATATGTGGTGACTTCAA 4497 30 100.0 35 .............................. GCTACTGCGCAAAATCCAGTAACTAAAGATATAAG 4562 30 100.0 36 .............................. ACCCCTACACGCAAAAAGAAGCTAGTGTAGAGATAG 4628 30 100.0 37 .............................. ATGGAATATACTTTTAATAAGGCGTTTTTTAATGCGG 4695 30 100.0 36 .............................. ACGTATAGTTTTTATATATTTTTCTTGCAATTCAAC 4761 30 100.0 36 .............................. AATGAACATAAAAAATATGCTTTTAGTTATGGCAAA 4827 30 100.0 36 .............................. AATTTATTGCAAAAAAAAGCGAATTGAAAGCAGCGA 4893 30 100.0 35 .............................. GGCATTGACTTAGACGCTTTTATTACTGTATTTAA 4958 30 100.0 38 .............................. ATAAAAGTAGTTTTATCTACTGCAAGTGCCTCATTCAA 5026 30 100.0 36 .............................. TCTGTTTTTGGTAAAATAGTTCCATGAAGCTTTGTG 5092 30 100.0 36 .............................. AGCTAGTCGTATTAAAAAAAGAGACGAGCTTGTCCT 5158 30 100.0 35 .............................. GTTATAGAGTGCCTTTTAGACAATAATTTTAAAAT 5223 30 96.7 36 ...................A.......... TAGTTTTGTTGGTTCTTATGTCACTAAACAGTTCAT 5289 30 100.0 35 .............................. TTTATCCGTTAAACGGAATTTAATATTCAAAACTT 5354 30 100.0 36 .............................. AAAGGCTTAATTTTATCAGATATATTAAAATCAAAC 5420 30 100.0 37 .............................. AGCCTTTTTTTAAGGCTTATATTAAGTCTATTAAATT 5487 30 100.0 35 .............................. TATGAAAGGTGGTTCACAGTATAGGGTTTTGATGA 5552 30 100.0 36 .............................. AAAGAATTTCCCAAAATCTTTAGCGCTCGAAGAAAA 5618 30 100.0 36 .............................. ATATTTTATATGGGGTTTGTGTGTATGGGTAAATAT 5684 30 100.0 36 .............................. AAAAACACCTACTTACTATAAACTAAGTTTAGTTGC 5750 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 99.9 36 GTTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGTTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAGTGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTAGTTACTTAGAAGTGGTAGAAGAGGCATTCGACAA # Right flank : GCTCCATCTATAAAACTAAATAGTTGATTTTTAAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //